Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E010033.5

Sequence:


               
               ATTCGAGTGTGCGGCTGAGGAGGGAGTAAGTTGAGAGCGCAGCGCAGTCAGTCCCGGGCA
GCAGCTGCAAGATGCCGAGCGCGCAGTCCAGACCCGAAGCTCCGCGAACGCAGCTTCGTC
CCGCCTGAGCCAGGTAGGGAGTGCGCGCGGGGCCGGCGCCGACCCGGGCGCACCGGGAAG
CATCGCGGCCGGACGTCTCCCGAGGCTGAAACAAATTTTTAAACCGGAACGAAGTAAAAC
AAACACTTTTAAAACATTCGTCTTTGGATGCTGAAAACAGGCATCTCTGGAATACTAAGG
AAGGAACCCAACTCCGATCGGATTGTTTTTGGAGCACTTGTGCCTCTAAAAGTTTGGAAA
AGGGTCAAGTCCCCGTGGCGGAGCCGTCTGGGGTTAGGGGAGAGCGGAAGCTGCGGCGGG
CTGGAGGAGAGGGAGGAAAGGCTCGTATTTTGGGAAATCCTATAGACAAAGAATATGGCA
GGAGGGGTAAGGGCATAAACTTGCCCTGAGAATGAGCAGGGTGTGGAATTAGGTGTGGGA
AACGCCGGGCTTCTGGGCTCCAGCAGCCTCTGCTGTCCCAGGAATTGCTGCGACTGCTCT
CACCTCGATTACTCCACGTTTATCGCATTTGCTACTTTACCTGGAAGCATTTAAACAACG
TGCGGGCAGACTTCTAATCAGTGTCGTGCTTCATTCCCTCCGCACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGAGTGTGCGGCTGAGGAGGGAGTAAGTTGAGAGCGCAGCGCAGTCAGTCCCGGGCA
GCAGCTGCAAGATGCCGAGCGCGCAGTCCAGACCCGAAGCTCCGCGAACGCAGCTTCGTC
CCGCCTGAGCCAGGTAGGGAGTGCGCGCGGGGCCGGCGCCGACCCGGGCGCACCGGGAAG
CATCGCGGCCGGACGTCTCCCGAGGCTGAAACAAATTTTTAAACCGGAACGAAGTAAAAC
AAACACTTTTAAAACATTCGTCTTTGGATGCTGAAAACAGGCATCTCTGGAATACTAAGG
AAGGAACCCAACTCCGATCGGATTGTTTTTGGAGCACTTGTGCCTCTAAAAGTTTGGAAA
AGGGTCAAGTCCCCGTGGCGGAGCCGTCTGGGGTTAGGGGAGAGCGGAAGCTGCGGCGGG
CTGGAGGAGAGGGAGGAAAGGCTCGTATTTTGGGAAATCCTATAGACAAAGAATATGGCA
GGAGGGGTAAGGGCATAAACTTGCCCTGAGAATGAGCAGGGTGTGGAATTAGGTGTGGGA
AACGCCGGGCTTCTGGGCTCCAGCAGCCTCTGCTGTCCCAGGAATTGCTGCGACTGCTCT
CACCTCGATTACTCCACGTTTATCGCATTTGCTACTTTACCTGGAAGCATTTAAACAACG
TGCGGGCAGACTTCTAATCAGTGTCGTGCTTCATTCCCTCCGCACTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               358-447, - strand, RNAz p=0.891763

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-447, - strand, RNAz p=0.891763

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               24-708, gnl|bosTau2|chr3 (34154446-34155114)
               

               
               24-708, gnl|canFam2|chr6 (51953380-51952433)
               

               
               24-708, gnl|dasNov1|scaffold_37924 (2991-3932)
               

               
               24-708, gnl|hg17|chr1 (101414429-101415392)
               

               
               24-708, gnl|Hg17|chr1 (101414567-101415251)
               

               
               24-708, gnl|loxAfr1|scaffold_911 (20532-21473)
               

               
               24-708, gnl|mm7|chr3 (115489872-115488943)
               

               
               24-708, gnl|Mm7|chr3 (115489733-115489065)
               

               
               24-708, gnl|monDom2|scaffold_0 (17603186-17602099)
               

               
               24-708, gnl|oryCun1|scaffold_211191 (98939-99878)
               

               
               24-708, gnl|panTro1|chr1 (100464199-100465161)
               

               
               24-708, gnl|rheMac2|chr1 (104302333-104303301)
               

               
               24-708, gnl|rn3|chr2 (211818447-211817536)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-708, gnl|bosTau2|chr3 (34154446-34155114)
               

               
               24-708, gnl|canFam2|chr6 (51953380-51952433)
               

               
               24-708, gnl|dasNov1|scaffold_37924 (2991-3932)
               

               
               24-708, gnl|hg17|chr1 (101414429-101415392)
               

               
               24-708, gnl|Hg17|chr1 (101414567-101415251)
               

               
               24-708, gnl|loxAfr1|scaffold_911 (20532-21473)
               

               
               24-708, gnl|mm7|chr3 (115489872-115488943)
               

               
               24-708, gnl|Mm7|chr3 (115489733-115489065)
               

               
               24-708, gnl|monDom2|scaffold_0 (17603186-17602099)
               

               
               24-708, gnl|oryCun1|scaffold_211191 (98939-99878)
               

               
               24-708, gnl|panTro1|chr1 (100464199-100465161)
               

               
               24-708, gnl|rheMac2|chr1 (104302333-104303301)
               

               
               24-708, gnl|rn3|chr2 (211818447-211817536)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	24-708, gnl\|bosTau2\|chr3 (34154446-34155114)
	24-708, gnl\|canFam2\|chr6 (51953380-51952433)
	24-708, gnl\|dasNov1\|scaffold_37924 (2991-3932)
	24-708, gnl\|hg17\|chr1 (101414429-101415392)
	24-708, gnl\|Hg17\|chr1 (101414567-101415251)
	24-708, gnl\|loxAfr1\|scaffold_911 (20532-21473)
	24-708, gnl\|mm7\|chr3 (115489872-115488943)
	24-708, gnl\|Mm7\|chr3 (115489733-115489065)
	24-708, gnl\|monDom2\|scaffold_0 (17603186-17602099)
	24-708, gnl\|oryCun1\|scaffold_211191 (98939-99878)
	24-708, gnl\|panTro1\|chr1 (100464199-100465161)
	24-708, gnl\|rheMac2\|chr1 (104302333-104303301)
	24-708, gnl\|rn3\|chr2 (211818447-211817536)