Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E040180.5

Sequence:


               
               CGCTGGCTACATGGAGCCCTACGAGGCCCAGAGGATCATGACAGAGTTTCAGAGGCAGGA
AAGCGTCCGGTCCCAGCACAAGGGCATCCAGTTATACGATACCCCTTATGAACCCGAGGG
CCAGAGCGTGGACTCAGACTCCGAGAGCACGGTCAGCCCCCGCCTGCGGGAGAGCAAGCT
GCCCCAGGACGACGACAGGCCCGCCGATGAGTACGACCAGCCGTGGGAGTGGAACCGGGT
CACCATCCCAGCTCTGGCAGCCCAGTTTAATGGCAACGAGAAACGGCAGTCATCCCCCTC
ACCTTCCCGAGACCGGCGGCGCCAGCTTCGAGCTCCTGGCGGGGGCTTCAAGCCCATCAA
ACATGGGAGCCCCGAGTTCTGTGGGATCCTGGGAGAGAGAGTGGATCCTTCTGTCCCCCT
GGAGAAGCAAATATGGTATCATGGAGCCATCAGCAGAGGAGACGCCGAGAACCTGCTGCG
ACTCTGCAAGGAGTGTAGCTACCTTGTCCGGAACAGCCAGACCAGCAGGCACGACTACTC
CCTCTCCCTGAAGAGCAACCAGGGCTTCATGCACATGAAACTGGCCAAAACCAAAGAGAA
ATACGTCCTGGGTCAGAACAGCCCCCCGTTCGACAGTGTCCCCGAAGTCATCCACTACTA
CACCACCAGAAAGCTGCCCATCAAAGGGGCCGAGCACTTGTCTCTCCTCTACCCTGTGGC
TGTGCGGACCCTGTGAGCCCCGCCCTGCCCTGTCACAGAGCCCCGACGTGGAGGAGCTGG
TGGCCAGCCGTGTCCAGTTTGTGTCGTGTGTATGGTACTAGCAGACCACTGCATGTCTCT
AGAATGCTGTCTCCACTCTGGGGGCTGGAGAAGGCCTGGATAAAGACTGAAGGATGCCGG
CCGGCGGCGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGGCTACATGGAGCCCTACGAGGCCCAGAGGATCATGACAGAGTTTCAGAGGCAGGA
AAGCGTCCGGTCCCAGCACAAGGGCATCCAGTTATACGATACCCCTTATGAACCCGAGGG
CCAGAGCGTGGACTCAGACTCCGAGAGCACGGTCAGCCCCCGCCTGCGGGAGAGCAAGCT
GCCCCAGGACGACGACAGGCCCGCCGATGAGTACGACCAGCCGTGGGAGTGGAACCGGGT
CACCATCCCAGCTCTGGCAGCCCAGTTTAATGGCAACGAGAAACGGCAGTCATCCCCCTC
ACCTTCCCGAGACCGGCGGCGCCAGCTTCGAGCTCCTGGCGGGGGCTTCAAGCCCATCAA
ACATGGGAGCCCCGAGTTCTGTGGGATCCTGGGAGAGAGAGTGGATCCTTCTGTCCCCCT
GGAGAAGCAAATATGGTATCATGGAGCCATCAGCAGAGGAGACGCCGAGAACCTGCTGCG
ACTCTGCAAGGAGTGTAGCTACCTTGTCCGGAACAGCCAGACCAGCAGGCACGACTACTC
CCTCTCCCTGAAGAGCAACCAGGGCTTCATGCACATGAAACTGGCCAAAACCAAAGAGAA
ATACGTCCTGGGTCAGAACAGCCCCCCGTTCGACAGTGTCCCCGAAGTCATCCACTACTA
CACCACCAGAAAGCTGCCCATCAAAGGGGCCGAGCACTTGTCTCTCCTCTACCCTGTGGC
TGTGCGGACCCTGTGAGCCCCGCCCTGCCCTGTCACAGAGCCCCGACGTGGAGGAGCTGG
TGGCCAGCCGTGTCCAGTTTGTGTCGTGTGTATGGTACTAGCAGACCACTGCATGTCTCT
AGAATGCTGTCTCCACTCTGGGGGCTGGAGAAGGCCTGGATAAAGACTGAAGGATGCCGG
CCGGCGGCGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|545100|gb|AAB29780.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|545100|gb|AAB29780.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               42-260, gnl|bosTau2|chr8 (29142579-29142361)
               

               
               42-260, gnl|Hg17|chr9 (37964837-37964619)
               

               
               42-260, gnl|Mm7|chr4 (45472159-45471941)
               


               
               541-759, gnl|bosTau2|chr10 (45012423-45012646)
               

               
               541-759, gnl|Hg17|chr15 (43247634-43247411)
               

               
               541-759, gnl|Mm7|chr2 (122090403-122090180)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-260, gnl|bosTau2|chr8 (29142579-29142361)
               

               
               42-260, gnl|Hg17|chr9 (37964837-37964619)
               

               
               42-260, gnl|Mm7|chr4 (45472159-45471941)
               


               
               541-759, gnl|bosTau2|chr10 (45012423-45012646)
               

               
               541-759, gnl|Hg17|chr15 (43247634-43247411)
               

               
               541-759, gnl|Mm7|chr2 (122090403-122090180)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

	42-260, gnl\|bosTau2\|chr8 (29142579-29142361)
	42-260, gnl\|Hg17\|chr9 (37964837-37964619)
	42-260, gnl\|Mm7\|chr4 (45472159-45471941)

	541-759, gnl\|bosTau2\|chr10 (45012423-45012646)
	541-759, gnl\|Hg17\|chr15 (43247634-43247411)
	541-759, gnl\|Mm7\|chr2 (122090403-122090180)