Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E040203.5.5

Sequence:


               
               GAGAGTGAAAGGGATAAAATAGGGCCCTGTGTTTCAAATCCTGATCCCTGGTTCAGGTTG
CAATTACAAGGCTGCTTAAATTGCTCTTGCAGAGCCCTGTAAGTAGCTGTCCTTGTGGCT
CCTCATACTGACCCCTGCCTGGCCTCACTCCCCACAGGATGGGTCTGCTCCTCCCGCTGG
TGCTCTGCGCCCTGGCCGTGGGCTGCGGGGCTACATCTCCACCCCAGCCGCTGCCCCCTA
CATCCTCGCTTCTCCTCTCCCATGCCTGCAACAGCTCTTATGTGCTGGATGTTGTGAACC
TCGTCCTGCAGGAGATCAACAGGAACCAGAAGGACGGCTACGTGCTGAGCCCCAACCGAG
TGAGCGATGTCCGCGAACACAGACAGGGTGACCTGGGATCTCTGTTCTATCTCACGCTGG
ACGTGATAGAGTCTAGCTGCCATGTGCTCAGTAAGATGTCATGGAAGGACTGTGGGCTGA
CGCCATTCCATGAATCGGAATATGGTCAATGCAAAGCAATATTTTACATCAATAAGGCAA
GAAGAATTCACTATTTACCTGCTTATAACTGTATTCTTCGCCCAGTTTCTCCAGGACAGC
TTGTCACGCTATGCCCTGACTGCCCCACCCACGTGAACATGTCAGATACCAAAGTCCTGG
AAGCTGCCACCAAGTCTCTCGAAGAGTTCAATAAAAGGAGAACCTCAAAGAAGTATTCAC
TGGTCAAAGTTACCAGGGCTCTCTTTCAGTGGGTGTTTGGCCCTGCCTACTTTGTGGAAT
ATTTAATCAAAGAGTCACCGTGTACCAAATCTCAGGCTAGCAGCTGCGCACTCCAGCCCC
CTAACCCTGAGCCTGTTGGTATTTGCAGTGGTTCTCGGAGTGAAAGAGGCCCCGAAAAGT
TTGTCTCCGTGAGGTGTAGCTTCTTTAAATCACAGGCTCCCACCCCTGGAGATGCATACT
CTACTGCTAGCCGAGGTGACCCCACCAAGGTGGAAGAGCCCCAGCAGGAAAGCACAGCCT
CTGCCAAGCCTGTGCCAAAGGGATCTGTCCAGCACCTTCCCGGATTGGGTGATAAGCCTA
AAGGTTCCCCGGAAACAGGCCCTGAGGAGGCCTTCCCTGTACGGGTGGATCTAACTTCGA
ATCCTCAAGGAGAACCGCTGGATGTCTCCTTCCTCTTCCCAGAGCCTGTGGAGAAGGACC
TGGTTGTTCTGCCTTTCCCCTCAAGAGAATGGCGCTCTGCTGAATGCCCAGGACCAGCTC
GGGTTTCCAACCCTCTTGTTCTCCCGCCATGAAAATGAAGTAGGGGATTCCTGGGAACAC
AGGGCCCTGCAGAAGATGAGGGGTGGTGGAGAAGAGGGATGGAGAGTTCAAACAGAGAGA
GGGCTAATAAAGTGCATCTTTTTGACTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGTGAAAGGGATAAAATAGGGCCCTGTGTTTCAAATCCTGATCCCTGGTTCAGGTTG
CAATTACAAGGCTGCTTAAATTGCTCTTGCAGAGCCCTGTAAGTAGCTGTCCTTGTGGCT
CCTCATACTGACCCCTGCCTGGCCTCACTCCCCACAGGATGGGTCTGCTCCTCCCGCTGG
TGCTCTGCGCCCTGGCCGTGGGCTGCGGGGCTACATCTCCACCCCAGCCGCTGCCCCCTA
CATCCTCGCTTCTCCTCTCCCATGCCTGCAACAGCTCTTATGTGCTGGATGTTGTGAACC
TCGTCCTGCAGGAGATCAACAGGAACCAGAAGGACGGCTACGTGCTGAGCCCCAACCGAG
TGAGCGATGTCCGCGAACACAGACAGGGTGACCTGGGATCTCTGTTCTATCTCACGCTGG
ACGTGATAGAGTCTAGCTGCCATGTGCTCAGTAAGATGTCATGGAAGGACTGTGGGCTGA
CGCCATTCCATGAATCGGAATATGGTCAATGCAAAGCAATATTTTACATCAATAAGGCAA
GAAGAATTCACTATTTACCTGCTTATAACTGTATTCTTCGCCCAGTTTCTCCAGGACAGC
TTGTCACGCTATGCCCTGACTGCCCCACCCACGTGAACATGTCAGATACCAAAGTCCTGG
AAGCTGCCACCAAGTCTCTCGAAGAGTTCAATAAAAGGAGAACCTCAAAGAAGTATTCAC
TGGTCAAAGTTACCAGGGCTCTCTTTCAGTGGGTGTTTGGCCCTGCCTACTTTGTGGAAT
ATTTAATCAAAGAGTCACCGTGTACCAAATCTCAGGCTAGCAGCTGCGCACTCCAGCCCC
CTAACCCTGAGCCTGTTGGTATTTGCAGTGGTTCTCGGAGTGAAAGAGGCCCCGAAAAGT
TTGTCTCCGTGAGGTGTAGCTTCTTTAAATCACAGGCTCCCACCCCTGGAGATGCATACT
CTACTGCTAGCCGAGGTGACCCCACCAAGGTGGAAGAGCCCCAGCAGGAAAGCACAGCCT
CTGCCAAGCCTGTGCCAAAGGGATCTGTCCAGCACCTTCCCGGATTGGGTGATAAGCCTA
AAGGTTCCCCGGAAACAGGCCCTGAGGAGGCCTTCCCTGTACGGGTGGATCTAACTTCGA
ATCCTCAAGGAGAACCGCTGGATGTCTCCTTCCTCTTCCCAGAGCCTGTGGAGAAGGACC
TGGTTGTTCTGCCTTTCCCCTCAAGAGAATGGCGCTCTGCTGAATGCCCAGGACCAGCTC
GGGTTTCCAACCCTCTTGTTCTCCCGCCATGAAAATGAAGTAGGGGATTCCTGGGAACAC
AGGGCCCTGCAGAAGATGAGGGGTGGTGGAGAAGAGGGATGGAGAGTTCAAACAGAGAGA
GGGCTAATAAAGTGCATCTTTTTGACTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61554586|gb|AAX46582.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61554586|gb|AAX46582.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1073-1190, - strand, RNAz p=0.707315
               

               
               1271-1383, + strand, RNAz p=0.962284

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1073-1190, - strand, RNAz p=0.707315
               

               
               1271-1383, + strand, RNAz p=0.962284

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014375, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014375, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               10-387, gnl|bosTau2|chr1 (50932443-50932807)
               

               
               10-387, gnl|Hg17|chr3 (187840827-187841177)
               


               
               748-849, gnl|bosTau2|chr1 (50937802-50937903)
               

               
               748-849, gnl|canFam2|chr34 (22272921-22273416)
               

               
               748-849, gnl|dasNov1|scaffold_297808 (724-1175)
               

               
               748-849, gnl|echTel1|scaffold_320665 (56357-55881)
               

               
               748-849, gnl|hg17|chr3 (187846692-187847147)
               

               
               748-849, gnl|Hg17|chr3 (187846737-187846838)
               

               
               748-849, gnl|mm7|chr16 (22598320-22598707)
               

               
               748-849, gnl|Mm7|chr16 (22598358-22598456)
               

               
               748-849, gnl|oryCun1|scaffold_122563 (11912-11447)
               

               
               748-849, gnl|panTro1|chr2 (191937821-191938273)
               

               
               748-849, gnl|rheMac2|chr2 (99981728-99981271)
               

               
               748-849, gnl|rn3|chr11 (80337281-80336896)
               


               
               933-1406, gnl|bosTau2|chr1 (50947184-50947673)
               

               
               933-1406, gnl|Hg17|chr3 (187852751-187853242)
               

               
               933-1406, gnl|Mm7|chr16 (22601991-22602471)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-387, gnl|bosTau2|chr1 (50932443-50932807)
               

               
               10-387, gnl|Hg17|chr3 (187840827-187841177)
               


               
               748-849, gnl|bosTau2|chr1 (50937802-50937903)
               

               
               748-849, gnl|canFam2|chr34 (22272921-22273416)
               

               
               748-849, gnl|dasNov1|scaffold_297808 (724-1175)
               

               
               748-849, gnl|echTel1|scaffold_320665 (56357-55881)
               

               
               748-849, gnl|hg17|chr3 (187846692-187847147)
               

               
               748-849, gnl|Hg17|chr3 (187846737-187846838)
               

               
               748-849, gnl|mm7|chr16 (22598320-22598707)
               

               
               748-849, gnl|Mm7|chr16 (22598358-22598456)
               

               
               748-849, gnl|oryCun1|scaffold_122563 (11912-11447)
               

               
               748-849, gnl|panTro1|chr2 (191937821-191938273)
               

               
               748-849, gnl|rheMac2|chr2 (99981728-99981271)
               

               
               748-849, gnl|rn3|chr11 (80337281-80336896)
               


               
               933-1406, gnl|bosTau2|chr1 (50947184-50947673)
               

               
               933-1406, gnl|Hg17|chr3 (187852751-187853242)
               

               
               933-1406, gnl|Mm7|chr16 (22601991-22602471)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eli (26.112)
               

               
               fli (9.33252)
               

               
               elu (1.54143)
               

               
               ese (1.26502)
               

               
               fty (0.351679)
               

               
               cli (0.305623)
               

               
               cag (0.151194)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (26.112)
               

               
               fli (9.33252)
               

               
               elu (1.54143)
               

               
               ese (1.26502)
               

               
               fty (0.351679)
               

               
               cli (0.305623)
               

               
               cag (0.151194)

	1073-1190, - strand, RNAz p=0.707315
	1271-1383, + strand, RNAz p=0.962284

	10-387, gnl\|bosTau2\|chr1 (50932443-50932807)
	10-387, gnl\|Hg17\|chr3 (187840827-187841177)

	748-849, gnl\|bosTau2\|chr1 (50937802-50937903)
	748-849, gnl\|canFam2\|chr34 (22272921-22273416)
	748-849, gnl\|dasNov1\|scaffold_297808 (724-1175)
	748-849, gnl\|echTel1\|scaffold_320665 (56357-55881)
	748-849, gnl\|hg17\|chr3 (187846692-187847147)
	748-849, gnl\|Hg17\|chr3 (187846737-187846838)
	748-849, gnl\|mm7\|chr16 (22598320-22598707)
	748-849, gnl\|Mm7\|chr16 (22598358-22598456)
	748-849, gnl\|oryCun1\|scaffold_122563 (11912-11447)
	748-849, gnl\|panTro1\|chr2 (191937821-191938273)
	748-849, gnl\|rheMac2\|chr2 (99981728-99981271)
	748-849, gnl\|rn3\|chr11 (80337281-80336896)

	933-1406, gnl\|bosTau2\|chr1 (50947184-50947673)
	933-1406, gnl\|Hg17\|chr3 (187852751-187853242)
	933-1406, gnl\|Mm7\|chr16 (22601991-22602471)

	eli (26.112)
	fli (9.33252)
	elu (1.54143)
	ese (1.26502)
	fty (0.351679)
	cli (0.305623)
	cag (0.151194)