Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E060091.5

Sequence:


               
               CTTGTTTTCGCTCCGGATTCTCCATGTTGGACCCAAACTGAGGAGCCCGGAGCTGCCGCC
GGGGGATCGGGGCCGGGGGCACCCGGGGGAGCCGCTGCCGGGGCCGCCCGCTCTCGGTAC
AGGCCGCCTCCCTTCCCGGCCCAGGGAGGGAACAAGAGCAGGCATGTGAACAGCAGTGGG
AGTCGGAGTCTCGGGAGCCGGAGCCGGAGCGGGCCCCCGCCCAGGCCCCCCAGCCCAGCA
CAAGCCTGTGCGCCCGCGCGTCCTCCCGCCCAGCCAGCCCGGGCCCGTGGGATTGTTAGA
TGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGC
AAGGCCTGGTCTCCAAGTCCTCTCCTAAGAAGCCTCGTGGACGTAATATCTTCAAGGCCC
TTTTCTGCTGTTTCGGAGCCCAGCATGTTGGCCAGTCCAGCTCCTCCACTGAGCTCTCCG
CGTATAAGGAGGAAGCCAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTACC
AGTTTTATCAGATCCCAGGGACCTGCCTGCTCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTTTTCGCTCCGGATTCTCCATGTTGGACCCAAACTGAGGAGCCCGGAGCTGCCGCC
GGGGGATCGGGGCCGGGGGCACCCGGGGGAGCCGCTGCCGGGGCCGCCCGCTCTCGGTAC
AGGCCGCCTCCCTTCCCGGCCCAGGGAGGGAACAAGAGCAGGCATGTGAACAGCAGTGGG
AGTCGGAGTCTCGGGAGCCGGAGCCGGAGCGGGCCCCCGCCCAGGCCCCCCAGCCCAGCA
CAAGCCTGTGCGCCCGCGCGTCCTCCCGCCCAGCCAGCCCGGGCCCGTGGGATTGTTAGA
TGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGC
AAGGCCTGGTCTCCAAGTCCTCTCCTAAGAAGCCTCGTGGACGTAATATCTTCAAGGCCC
TTTTCTGCTGTTTCGGAGCCCAGCATGTTGGCCAGTCCAGCTCCTCCACTGAGCTCTCCG
CGTATAAGGAGGAAGCCAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTACC
AGTTTTATCAGATCCCAGGGACCTGCCTGCTCCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               234-364, - strand, RNAz p=0.78128

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-364, - strand, RNAz p=0.78128

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-364, gnl|bosTau2|chr5 (34407125-34406752)
               

               
               1-364, gnl|Hg17|chr12 (56526777-56526421)
               

               
               1-364, gnl|Mm7|chr10 (126476418-126476780)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-364, gnl|bosTau2|chr5 (34407125-34406752)
               

               
               1-364, gnl|Hg17|chr12 (56526777-56526421)
               

               
               1-364, gnl|Mm7|chr10 (126476418-126476780)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cty (0.10408)

	1-364, gnl\|bosTau2\|chr5 (34407125-34406752)
	1-364, gnl\|Hg17\|chr12 (56526777-56526421)
	1-364, gnl\|Mm7\|chr10 (126476418-126476780)