Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E080004.5

Sequence:


               
               GGATCACCGTTTGCGTTGGCCAGAGAATCATTGCCCTCCCGCACGACAACCGCCAGGTGA
GGTTGTTTGACATGTCGGGCGTGCGGCTGGCGAGGCTCCCTCGCAGCAGCCGGCAGGGCC
ACCGGCGGATGGTGTGCGGCTCGGCCTGGAGCGAGGACCACCCCGTGTGCAACCTGTTCA
CCTGCGGCTTCGACCGCCAGGCCATTGGCTGGAGCATCAACATCCCGGCGCTGCTGCAGG
AGAAGTGAGGGCCCCGACGGGGCCCAGGACCGCGCGCGGCGCCCGCCCGTCCCGTGTGAG
GAGCGTGTCCGTGGGAGGCGGCCCCGGGGCGGGTGATGTACATGCTGTCCCCACGCTGTG
CGCCCGGCTTGCATGAAATGTCCAGAACGTGCTCCCGTGTTTTATTTTTGTCTGTGTGTG
TTGGCATCACTGGTGGGCAGAGGCGGGGCCGCTCCGGAGCCCTGTGCGCGTTGTGAGTCC
CTGGGTGTGTCAGGAGGGCGTTGCGTCTGCCTGAGTGAAATGTGACCGTGTCTTCGCGGG
GCGTGCGTGTTCTCTGCGCTCCTGGAACCGGGACGCACGACCGCCTGCCTTATCCTGGAA
GGTGGCTGACGGCGGCGGGAGCCAGCAGAGGCCTCATGCCTGCGTCCGCAGTTGAGCGCG
TTGCGTCTGTGACTCGGCTGCGCCTCGTGTGCTGTGACGGTCCTGTGACAGCAACCTGGA
TTTTAGAAGTTTTCAAAAAGCATAGAACGTTGAACTTGCAACACTGGGACAGTTTCTTTT
GCAAAGAAAAAGTTTCTGCTCTTTTTATAGAAAATCATTTCAATCTCCTGCGGTCTCATG
CTGGCAAATTCTAAAATGCGATGATTCTAATCACTGATTTCAGATATCAAGCAAGAGTTA
AAGCACTTTAGTTTATAGCTGTGGTTATAAACAGTTTTTAGACGTTTCCAATGACTTATC
CATTGAATGTGACTTGGCCTTTCTGGAAGGCCTGGCTGCCTGAAAACAAACCTTATTTAT
TTTCGACACCTTGGGTTTGCACGTTTCAGGTGGGTTCGCTTCCTCAGTGGTATTTGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCACCGTTTGCGTTGGCCAGAGAATCATTGCCCTCCCGCACGACAACCGCCAGGTGA
GGTTGTTTGACATGTCGGGCGTGCGGCTGGCGAGGCTCCCTCGCAGCAGCCGGCAGGGCC
ACCGGCGGATGGTGTGCGGCTCGGCCTGGAGCGAGGACCACCCCGTGTGCAACCTGTTCA
CCTGCGGCTTCGACCGCCAGGCCATTGGCTGGAGCATCAACATCCCGGCGCTGCTGCAGG
AGAAGTGAGGGCCCCGACGGGGCCCAGGACCGCGCGCGGCGCCCGCCCGTCCCGTGTGAG
GAGCGTGTCCGTGGGAGGCGGCCCCGGGGCGGGTGATGTACATGCTGTCCCCACGCTGTG
CGCCCGGCTTGCATGAAATGTCCAGAACGTGCTCCCGTGTTTTATTTTTGTCTGTGTGTG
TTGGCATCACTGGTGGGCAGAGGCGGGGCCGCTCCGGAGCCCTGTGCGCGTTGTGAGTCC
CTGGGTGTGTCAGGAGGGCGTTGCGTCTGCCTGAGTGAAATGTGACCGTGTCTTCGCGGG
GCGTGCGTGTTCTCTGCGCTCCTGGAACCGGGACGCACGACCGCCTGCCTTATCCTGGAA
GGTGGCTGACGGCGGCGGGAGCCAGCAGAGGCCTCATGCCTGCGTCCGCAGTTGAGCGCG
TTGCGTCTGTGACTCGGCTGCGCCTCGTGTGCTGTGACGGTCCTGTGACAGCAACCTGGA
TTTTAGAAGTTTTCAAAAAGCATAGAACGTTGAACTTGCAACACTGGGACAGTTTCTTTT
GCAAAGAAAAAGTTTCTGCTCTTTTTATAGAAAATCATTTCAATCTCCTGCGGTCTCATG
CTGGCAAATTCTAAAATGCGATGATTCTAATCACTGATTTCAGATATCAAGCAAGAGTTA
AAGCACTTTAGTTTATAGCTGTGGTTATAAACAGTTTTTAGACGTTTCCAATGACTTATC
CATTGAATGTGACTTGGCCTTTCTGGAAGGCCTGGCTGCCTGAAAACAAACCTTATTTAT
TTTCGACACCTTGGGTTTGCACGTTTCAGGTGGGTTCGCTTCCTCAGTGGTATTTGAGAG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               113-517, gnl|bosTau2|chr13 (31310181-31309776)
               

               
               113-517, gnl|Hg17|chr10 (1165011-1165644)
               

               
               113-517, gnl|Mm7|chr13 (8684859-8684386)
               


               
               613-1080, gnl|bosTau2|chr13 (31309736-31309276)
               

               
               613-1080, gnl|Hg17|chr10 (1165722-1166182)
               

               
               613-1080, gnl|Mm7|chr13 (8684335-8683849)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-517, gnl|bosTau2|chr13 (31310181-31309776)
               

               
               113-517, gnl|Hg17|chr10 (1165011-1165644)
               

               
               113-517, gnl|Mm7|chr13 (8684859-8684386)
               


               
               613-1080, gnl|bosTau2|chr13 (31309736-31309276)
               

               
               613-1080, gnl|Hg17|chr10 (1165722-1166182)
               

               
               613-1080, gnl|Mm7|chr13 (8684335-8683849)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eep (0.122564)

	113-517, gnl\|bosTau2\|chr13 (31310181-31309776)
	113-517, gnl\|Hg17\|chr10 (1165011-1165644)
	113-517, gnl\|Mm7\|chr13 (8684859-8684386)

	613-1080, gnl\|bosTau2\|chr13 (31309736-31309276)
	613-1080, gnl\|Hg17\|chr10 (1165722-1166182)
	613-1080, gnl\|Mm7\|chr13 (8684335-8683849)