Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E100081.5.5

Sequence:


               
               ATGCAAGTGTGTGGGGGGAACCTATATAAAAGGTGTGGGTTCGCGGGGACAGTGCACGGC
GTGGAAGAGAAAGCAGCAGCCGTCCAGTGCCCACGAAGACGACCATGGCCAAGGAGTGGG
GCTACGCCGACCACAATGGTCCTGACCACTGGCATGAACTTTACCCAATTGCCAAGGGAG
ACAACCAATCGCCCATTGAACTGCACACTAAGGACATCAAGCACGACCCTTCTCTGCTGC
CCTGGACAGCATCTTATGACCCTGGCTCTGCCAAGACCATCCTGAACAATGGGAAGACCT
GCAGGGTTGTATTTGATGATACTTATGACAGGTCAATGCTGAGAGGTGGTCCTCTCACTG
CAGCCTACCGGCTTCGCCAGTTTCATCTTCACTGGGGCTCCTCAGATGATCACGGATCTG
AGCACACTGTGGATGGAGTCAAGTATGCTGCGGAGCTCCATTTGGTTCATTGGAATTCAA
AGTATAACAGTTTTGCAACTGCTCTGAAGCACCCTGATGGAGTGGCTGTAGTTGGCATTT
TTCTGAAGATAGGACGTGAGAAAGGCGAGTTCCAACTAGTCCTTGATGCATTGGACAAAA
TTAAGACAAAGGGCAAGGAGGCACCCTTCACGAACTTCAACCCATCCTGCCTGTTCCCTG
CCTGCCGGGACTACTGGACCTACCATGGCTCCTTCACCACGCCGCCCTGCGAGGAGTGCA
TTGTGTGGCTCCTGCTGAAGGAGCCCATCACCGTGAGCTCTGACCAGATGGCCAAGCTGC
GAAGCCTCTACTCCAGTGCGGAGAACGAGCCCCCTGTCCCCCTAGTGAGGAACTGGCGCC
CCCCACAGCCTATCAAGGGCAGGATAGTGAAGGCCTCCTTCAAATGAGGCTGCTGGAGCT
TGCCCTCTTCAGGAAAGGAAACCTGCTACTGCAGAGCTTGGTTCCTTGCCTCCTTTTGGT
GCTCCTTATTCCAAGTATTATTTCAGTTTTCCACACTGAGCAATGAAGGTGAGAGCTGCA
ATCACCAAGAACCAAAGTTACTATTGACAGATCTAATACGAAAGCATTTGGCCTTTGTAA
GAATCATCTTTCCTGTAAAAGAAAACTCTTACTAAGTTTCAAAGAAAAAGAAACAGAGAT
AGAAAAGATGGAGAAAAATGGCTGTTGGGCGCCATTTTGTGTCATCTTAAATTTCGCACA
ACTTCAGTTTTTACTCTTTTCATGTTACTAGTTATCGATCTTAAAGAAATAATGAGTAAT
TCTATATGAGGAGTAGAGGTATATGAAGATCATGTAGCAATTACACATAAGCCAGAAATT
AAAATAACTGTGGACGTCAAGAATTGCAATGATGCTGTGTGTTTTAACCCTTAAATAAAA
CTAACTAGAGGTCCATCATTTATTAAAATTGGAGTTCTGTAAAAAAGGGCTGGTTTTAAT
AATGAAAGTAACACATTTGACCGGGATTAAAAAAAAAAAAAAAGACCCATTTTTTGAATT
TTTTCTTCATAAAGATAGTTGACTTTATCCTATTTCTCTTTACCTGAAGGAGGGCCATTT
ATTTTTCTTTTTACTACTTTTATCTTTGCATGCTTACTAAAATAAAAACTGCCTCTGCTA
TCTTTCCATTTTGAGGGTGGGATTAATGATTCCTAGAACACGCAGGAGTGAATGACTGCA
CTTGAAGATAAAGGCAGTTGTATTGATCATCAAAACTAATAAAGACGTGAATGCGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCAAGTGTGTGGGGGGAACCTATATAAAAGGTGTGGGTTCGCGGGGACAGTGCACGGC
GTGGAAGAGAAAGCAGCAGCCGTCCAGTGCCCACGAAGACGACCATGGCCAAGGAGTGGG
GCTACGCCGACCACAATGGTCCTGACCACTGGCATGAACTTTACCCAATTGCCAAGGGAG
ACAACCAATCGCCCATTGAACTGCACACTAAGGACATCAAGCACGACCCTTCTCTGCTGC
CCTGGACAGCATCTTATGACCCTGGCTCTGCCAAGACCATCCTGAACAATGGGAAGACCT
GCAGGGTTGTATTTGATGATACTTATGACAGGTCAATGCTGAGAGGTGGTCCTCTCACTG
CAGCCTACCGGCTTCGCCAGTTTCATCTTCACTGGGGCTCCTCAGATGATCACGGATCTG
AGCACACTGTGGATGGAGTCAAGTATGCTGCGGAGCTCCATTTGGTTCATTGGAATTCAA
AGTATAACAGTTTTGCAACTGCTCTGAAGCACCCTGATGGAGTGGCTGTAGTTGGCATTT
TTCTGAAGATAGGACGTGAGAAAGGCGAGTTCCAACTAGTCCTTGATGCATTGGACAAAA
TTAAGACAAAGGGCAAGGAGGCACCCTTCACGAACTTCAACCCATCCTGCCTGTTCCCTG
CCTGCCGGGACTACTGGACCTACCATGGCTCCTTCACCACGCCGCCCTGCGAGGAGTGCA
TTGTGTGGCTCCTGCTGAAGGAGCCCATCACCGTGAGCTCTGACCAGATGGCCAAGCTGC
GAAGCCTCTACTCCAGTGCGGAGAACGAGCCCCCTGTCCCCCTAGTGAGGAACTGGCGCC
CCCCACAGCCTATCAAGGGCAGGATAGTGAAGGCCTCCTTCAAATGAGGCTGCTGGAGCT
TGCCCTCTTCAGGAAAGGAAACCTGCTACTGCAGAGCTTGGTTCCTTGCCTCCTTTTGGT
GCTCCTTATTCCAAGTATTATTTCAGTTTTCCACACTGAGCAATGAAGGTGAGAGCTGCA
ATCACCAAGAACCAAAGTTACTATTGACAGATCTAATACGAAAGCATTTGGCCTTTGTAA
GAATCATCTTTCCTGTAAAAGAAAACTCTTACTAAGTTTCAAAGAAAAAGAAACAGAGAT
AGAAAAGATGGAGAAAAATGGCTGTTGGGCGCCATTTTGTGTCATCTTAAATTTCGCACA
ACTTCAGTTTTTACTCTTTTCATGTTACTAGTTATCGATCTTAAAGAAATAATGAGTAAT
TCTATATGAGGAGTAGAGGTATATGAAGATCATGTAGCAATTACACATAAGCCAGAAATT
AAAATAACTGTGGACGTCAAGAATTGCAATGATGCTGTGTGTTTTAACCCTTAAATAAAA
CTAACTAGAGGTCCATCATTTATTAAAATTGGAGTTCTGTAAAAAAGGGCTGGTTTTAAT
AATGAAAGTAACACATTTGACCGGGATTAAAAAAAAAAAAAAAGACCCATTTTTTGAATT
TTTTCTTCATAAAGATAGTTGACTTTATCCTATTTCTCTTTACCTGAAGGAGGGCCATTT
ATTTTTCTTTTTACTACTTTTATCTTTGCATGCTTACTAAAATAAAAACTGCCTCTGCTA
TCTTTCCATTTTGAGGGTGGGATTAATGATTCCTAGAACACGCAGGAGTGAATGACTGCA
CTTGAAGATAAAGGCAGTTGTATTGATCATCAAAACTAATAAAGACGTGAATGCGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56711366|ref|NP_001008688.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56711366|ref|NP_001008688.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               138-336, gnl|bosTau2|chr14 (46815218-46815416)
               

               
               138-336, gnl|Hg17|chr8 (86539192-86539390)
               

               
               138-336, gnl|Mm7|chr3 (14885844-14886042)
               


               
               765-1734, gnl|bosTau2|chr14 (46823497-46824477)
               

               
               765-1734, gnl|Hg17|chr8 (86547512-86548517)
               

               
               765-1734, gnl|Mm7|chr3 (14893134-14894117)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-336, gnl|bosTau2|chr14 (46815218-46815416)
               

               
               138-336, gnl|Hg17|chr8 (86539192-86539390)
               

               
               138-336, gnl|Mm7|chr3 (14885844-14886042)
               


               
               765-1734, gnl|bosTau2|chr14 (46823497-46824477)
               

               
               765-1734, gnl|Hg17|chr8 (86547512-86548517)
               

               
               765-1734, gnl|Mm7|chr3 (14893134-14894117)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               vin (57.1999)
               

               
               isp (36.391)
               

               
               sme (26.2676)
               

               
               tbr (24.9769)
               

               
               bfe (23.2279)
               

               
               ldo (18.2365)
               

               
               ssp (16.3979)
               

               
               ste (6.6252)
               

               
               fat (5.01253)
               

               
               cki (0.826173)
               

               
               ski (0.733676)
               

               
               eru (0.720288)
               

               
               ctl (0.612276)
               

               
               csk (0.562984)
               

               
               ese (0.506009)
               

               
               jca (0.34188)
               

               
               lun (0.300978)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (57.1999)
               

               
               isp (36.391)
               

               
               sme (26.2676)
               

               
               tbr (24.9769)
               

               
               bfe (23.2279)
               

               
               ldo (18.2365)
               

               
               ssp (16.3979)
               

               
               ste (6.6252)
               

               
               fat (5.01253)
               

               
               cki (0.826173)
               

               
               ski (0.733676)
               

               
               eru (0.720288)
               

               
               ctl (0.612276)
               

               
               csk (0.562984)
               

               
               ese (0.506009)
               

               
               jca (0.34188)
               

               
               lun (0.300978)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	138-336, gnl\|bosTau2\|chr14 (46815218-46815416)
	138-336, gnl\|Hg17\|chr8 (86539192-86539390)
	138-336, gnl\|Mm7\|chr3 (14885844-14886042)

	765-1734, gnl\|bosTau2\|chr14 (46823497-46824477)
	765-1734, gnl\|Hg17\|chr8 (86547512-86548517)
	765-1734, gnl\|Mm7\|chr3 (14893134-14894117)

	vin (57.1999)
	isp (36.391)
	sme (26.2676)
	tbr (24.9769)
	bfe (23.2279)
	ldo (18.2365)
	ssp (16.3979)
	ste (6.6252)
	fat (5.01253)
	cki (0.826173)
	ski (0.733676)
	eru (0.720288)
	ctl (0.612276)
	csk (0.562984)
	ese (0.506009)
	jca (0.34188)
	lun (0.300978)
	cbe (0.239234)
	nms (0.213858)
	mas (0.210305)
	cty (0.20816)
	mga (0.160205)
	lin (0.145603)
	cst (0.140036)
	cly (0.120642)
	med (0.116252)