Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E110197.5

Sequence:


               
               ACTTCGGCCGGGCTGAGGCCCGCGATCTCCGCCCCTGCCTGGGCCACGGCCTGCCCCCTC
TCCCCAGAGTCGGCTCGCGCGCCCGCCCCGCTCCCTCCCTCCTCTAGCTTCTCCGCCACT
TCTTCCTTTGCCTTCCACCCCGAAGGACCATGTCGAGGTTCAGCTGGGGATACGGCGAGC
ACAACGGTCCTGTTCATTGGAATGAATTTTTTCCTATTGCTGATGGGGATCAACAATCTC
CGATTGAGATTAAAACCAAAGAAGTGAAATATGACTCTTCCCTCAGACCTCTTAGTATCA
AGTATGACCCAAGCTCAGCTAAAATCATCAGTAATAGTGGCCACTCCTTCAGCGTTGACT
TTGATGACACAGAGGACAAATCAGCTCCATGTTGTTCATTGGAATTCAGACAAATACCCC
AGCTTTGTTGAGGCAGCTCATGAACCAGATGGACTGATCACGGCTCAGAACATGTGGTGG
ATGGAGTAAAATATGCCGCAGAGCTCCATGTTGTTCATTGGAATTCAGACAAATACCCCA
GCTTTGTTGAGGCAGCTCATGAACCAGATGGACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCGGCCGGGCTGAGGCCCGCGATCTCCGCCCCTGCCTGGGCCACGGCCTGCCCCCTC
TCCCCAGAGTCGGCTCGCGCGCCCGCCCCGCTCCCTCCCTCCTCTAGCTTCTCCGCCACT
TCTTCCTTTGCCTTCCACCCCGAAGGACCATGTCGAGGTTCAGCTGGGGATACGGCGAGC
ACAACGGTCCTGTTCATTGGAATGAATTTTTTCCTATTGCTGATGGGGATCAACAATCTC
CGATTGAGATTAAAACCAAAGAAGTGAAATATGACTCTTCCCTCAGACCTCTTAGTATCA
AGTATGACCCAAGCTCAGCTAAAATCATCAGTAATAGTGGCCACTCCTTCAGCGTTGACT
TTGATGACACAGAGGACAAATCAGCTCCATGTTGTTCATTGGAATTCAGACAAATACCCC
AGCTTTGTTGAGGCAGCTCATGAACCAGATGGACTGATCACGGCTCAGAACATGTGGTGG
ATGGAGTAAAATATGCCGCAGAGCTCCATGTTGTTCATTGGAATTCAGACAAATACCCCA
GCTTTGTTGAGGCAGCTCATGAACCAGATGGACTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61856984|ref|XP_591606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856984|ref|XP_591606.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-304, - strand, RNAz p=0.566697

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-304, - strand, RNAz p=0.566697

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               186-384, gnl|bosTau2|chr14 (47883426-47883624)
               

               
               186-384, gnl|canFam2|chr29 (34793307-34793524)
               

               
               186-384, gnl|dasNov1|scaffold_2989 (47105-46893)
               

               
               186-384, gnl|echTel1|scaffold_194115 (3560-3772)
               

               
               186-384, gnl|fr1|chrUn (317647258-317647477)
               

               
               186-384, gnl|galGal2|chr2 (122072049-122072261)
               

               
               186-384, gnl|hg17|chr8 (86350200-86350412)
               

               
               186-384, gnl|Hg17|chr8 (86350220-86350418)
               

               
               186-384, gnl|loxAfr1|scaffold_15983 (53887-53675)
               

               
               186-384, gnl|mm7|chr3 (14647792-14648004)
               

               
               186-384, gnl|Mm7|chr3 (14647812-14648010)
               

               
               186-384, gnl|monDom2|scaffold_4 (69727684-69727486)
               

               
               186-384, gnl|oryCun1|scaffold_203118 (4636-4425)
               

               
               186-384, gnl|panTro1|chr7 (88469660-88469872)
               

               
               186-384, gnl|rheMac2|chr8 (87779078-87779290)
               

               
               186-384, gnl|rn3|chr2 (88250795-88250583)
               

               
               186-384, gnl|tetNig1|chrUn_random (18556526-18556721)
               

               
               186-384, gnl|xenTro1|scaffold_492 (766190-765981)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-384, gnl|bosTau2|chr14 (47883426-47883624)
               

               
               186-384, gnl|canFam2|chr29 (34793307-34793524)
               

               
               186-384, gnl|dasNov1|scaffold_2989 (47105-46893)
               

               
               186-384, gnl|echTel1|scaffold_194115 (3560-3772)
               

               
               186-384, gnl|fr1|chrUn (317647258-317647477)
               

               
               186-384, gnl|galGal2|chr2 (122072049-122072261)
               

               
               186-384, gnl|hg17|chr8 (86350200-86350412)
               

               
               186-384, gnl|Hg17|chr8 (86350220-86350418)
               

               
               186-384, gnl|loxAfr1|scaffold_15983 (53887-53675)
               

               
               186-384, gnl|mm7|chr3 (14647792-14648004)
               

               
               186-384, gnl|Mm7|chr3 (14647812-14648010)
               

               
               186-384, gnl|monDom2|scaffold_4 (69727684-69727486)
               

               
               186-384, gnl|oryCun1|scaffold_203118 (4636-4425)
               

               
               186-384, gnl|panTro1|chr7 (88469660-88469872)
               

               
               186-384, gnl|rheMac2|chr8 (87779078-87779290)
               

               
               186-384, gnl|rn3|chr2 (88250795-88250583)
               

               
               186-384, gnl|tetNig1|chrUn_random (18556526-18556721)
               

               
               186-384, gnl|xenTro1|scaffold_492 (766190-765981)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	186-384, gnl\|bosTau2\|chr14 (47883426-47883624)
	186-384, gnl\|canFam2\|chr29 (34793307-34793524)
	186-384, gnl\|dasNov1\|scaffold_2989 (47105-46893)
	186-384, gnl\|echTel1\|scaffold_194115 (3560-3772)
	186-384, gnl\|fr1\|chrUn (317647258-317647477)
	186-384, gnl\|galGal2\|chr2 (122072049-122072261)
	186-384, gnl\|hg17\|chr8 (86350200-86350412)
	186-384, gnl\|Hg17\|chr8 (86350220-86350418)
	186-384, gnl\|loxAfr1\|scaffold_15983 (53887-53675)
	186-384, gnl\|mm7\|chr3 (14647792-14648004)
	186-384, gnl\|Mm7\|chr3 (14647812-14648010)
	186-384, gnl\|monDom2\|scaffold_4 (69727684-69727486)
	186-384, gnl\|oryCun1\|scaffold_203118 (4636-4425)
	186-384, gnl\|panTro1\|chr7 (88469660-88469872)
	186-384, gnl\|rheMac2\|chr8 (87779078-87779290)
	186-384, gnl\|rn3\|chr2 (88250795-88250583)
	186-384, gnl\|tetNig1\|chrUn_random (18556526-18556721)
	186-384, gnl\|xenTro1\|scaffold_492 (766190-765981)