Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E120176.5

Sequence:


               
               AAGTCTGGAAGGCGGCAGGGATGGCGGCGGCGGGAACTGGACCCGGCCCGGGAGTGGGTG
CAGGAACCGGCCCAACAGCGGCCGTAAATGCAACACCGGCAGAAGAAGGGGAGACGAAGC
CGGTAGCAGCGGTAGCAGCCGCTCCGGCTGGCGAGGGGACGTCTGTTACTCCAGCCGCGG
AGCCAGTGTCGGGAGAGGCGGAAAGCGGGGATGCAAACTCGGTTGATGTAAGTGGTGGCT
TGGAGACGGAATCCTCTAATGGAAAAGATACACTAGAAGGTGCTGGGGATACTTCAGAGG
TGATGGATACTCAGGCGGGCTCCGTGGATGAAGAGAATGGCCGGCAATTGGGAGAGGTGG
AGCTACAGTGTGGAATATGTACAAAGTGGTTCACAGCAGACACGTTTGGCATAGATACCT
CATCCTGTCTACCTTTCATGACCAACTACAGTTTCCACTGCAATGTGCGCCATCATAGTG
GGAATACGTATTTCCTCCGGAAGCAAGCAAACTTGAAGGAAATGTGCCTTAGTGCTTTGG
CCAACCTAACGTGGCAGTCTCGAACACAGGATGAACACCCAAAAACCATGTTCTCCAAGG
ATAAGGATATCATACCATTTATTGATAAATACTGGGAGTGCATGACGACCAGACAGAGAC
CTGGGAAAATGACTTGGCCAAATAACATTGTTAAAACAATGAGTCAAGAAAGAGATGTGT
TCTTAGTAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTCTGGAAGGCGGCAGGGATGGCGGCGGCGGGAACTGGACCCGGCCCGGGAGTGGGTG
CAGGAACCGGCCCAACAGCGGCCGTAAATGCAACACCGGCAGAAGAAGGGGAGACGAAGC
CGGTAGCAGCGGTAGCAGCCGCTCCGGCTGGCGAGGGGACGTCTGTTACTCCAGCCGCGG
AGCCAGTGTCGGGAGAGGCGGAAAGCGGGGATGCAAACTCGGTTGATGTAAGTGGTGGCT
TGGAGACGGAATCCTCTAATGGAAAAGATACACTAGAAGGTGCTGGGGATACTTCAGAGG
TGATGGATACTCAGGCGGGCTCCGTGGATGAAGAGAATGGCCGGCAATTGGGAGAGGTGG
AGCTACAGTGTGGAATATGTACAAAGTGGTTCACAGCAGACACGTTTGGCATAGATACCT
CATCCTGTCTACCTTTCATGACCAACTACAGTTTCCACTGCAATGTGCGCCATCATAGTG
GGAATACGTATTTCCTCCGGAAGCAAGCAAACTTGAAGGAAATGTGCCTTAGTGCTTTGG
CCAACCTAACGTGGCAGTCTCGAACACAGGATGAACACCCAAAAACCATGTTCTCCAAGG
ATAAGGATATCATACCATTTATTGATAAATACTGGGAGTGCATGACGACCAGACAGAGAC
CTGGGAAAATGACTTGGCCAAATAACATTGTTAAAACAATGAGTCAAGAAAGAGATGTGT
TCTTAGTAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884283|ref|XP_606745.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884283|ref|XP_606745.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-209, gnl|bosTau2|chr27 (21165794-21166005)
               

               
               1-209, gnl|Hg17|chr8 (38082207-38082414)
               

               
               1-209, gnl|Mm7|chr8 (24597265-24597070)
               


               
               270-421, gnl|bosTau2|chr27 (21167717-21167868)
               

               
               270-421, gnl|Hg17|chr8 (38083690-38083841)
               

               
               270-421, gnl|Mm7|chr8 (24596383-24596232)
               


               
               601-701, gnl|bosTau2|chr27 (21175489-21175589)
               

               
               601-701, gnl|Hg17|chr8 (38090862-38090962)
               

               
               601-701, gnl|Mm7|chr8 (24590340-24590240)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-209, gnl|bosTau2|chr27 (21165794-21166005)
               

               
               1-209, gnl|Hg17|chr8 (38082207-38082414)
               

               
               1-209, gnl|Mm7|chr8 (24597265-24597070)
               


               
               270-421, gnl|bosTau2|chr27 (21167717-21167868)
               

               
               270-421, gnl|Hg17|chr8 (38083690-38083841)
               

               
               270-421, gnl|Mm7|chr8 (24596383-24596232)
               


               
               601-701, gnl|bosTau2|chr27 (21175489-21175589)
               

               
               601-701, gnl|Hg17|chr8 (38090862-38090962)
               

               
               601-701, gnl|Mm7|chr8 (24590340-24590240)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	1-209, gnl\|bosTau2\|chr27 (21165794-21166005)
	1-209, gnl\|Hg17\|chr8 (38082207-38082414)
	1-209, gnl\|Mm7\|chr8 (24597265-24597070)

	270-421, gnl\|bosTau2\|chr27 (21167717-21167868)
	270-421, gnl\|Hg17\|chr8 (38083690-38083841)
	270-421, gnl\|Mm7\|chr8 (24596383-24596232)

	601-701, gnl\|bosTau2\|chr27 (21175489-21175589)
	601-701, gnl\|Hg17\|chr8 (38090862-38090962)
	601-701, gnl\|Mm7\|chr8 (24590340-24590240)