Ss1.1-Liv1-LVRM1F010048.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCGCACCCGAGGCGTCGGAGCGCAGAGCAGAAGCGCCTACTCAAGGCCTTGCGAAAT TGTCCGAGGTACCAGTCCCGGTGCGCTGATGGAGGGATCCGCTGGTCGGCTGCTGCGCGG CAGCGCGCTGCTAAGAACAAACTTCCCAACTTGCCTGTCTTCATGGAAAAATCCTCCTCG TGTCCTGAAATCCTCCCAGCCAGCTCCACTCAAAACAACAAATAATGGCCTGTCTTACAG CCCCCTGCAGACATTTACAGATGAGGAGATGATGATAAAGAACACAGTTAAAAAATTTGC CCAGGAACAAATTGCTCCTTTGGTTTCAAAAATGGATGAAAATTCAAAAATGGAAAAATC AGTCATAGAAGGATTATTTCAACAAGGGTTGATGGGTATTGAAACTGAACCAAAATATGG AGGAACAGGAGCTTCATTTTTTTCCTCTGTCCTGGTGATAGAGGAATTAGCCAAGGTTGA TGCATCTGTGGCTCTGGTATGTGACCTCCAGAACACAGTAATTAACGATCTGATTGGGAG ATTTGGAACAGAAGCACAGAAGGCTACCTATTTGACTAAGCTAGCTACGGAACAATTAGG AAGTTTCTGCCTTTCGGAGCCTTCAGCAGGTAGCGATTCATTCTCTTTGAAGACCAGAGC TGACAAAGATGGAGATTATTATGTCATCAACGGGTCAAAGATGTGGATCACCAGTGCTGA GGATGCTGGGCTCTTCCTGGTGATGGCAAATGTAGACCCTGCCCTTGGGTATAAAGGAAT TACCTGCTTCTTGGTAGATCGTGATACCGAGGGCCTCCGTGTAGGGAAACCGGAGAACAA ATTGGGAATCAGAGCTTCTTCTACCTGCCCGGTAACACTTGAAAATGCCAAGGTTCCAGA AGCCAATATCGTGGGACAGATTGGACATGGCTATAAGTACGCCATTCAGAGTCTTAATAA AGGTAGAATAGGAATTGCGGCACAGATGCTGGGACTGGCTCAAGGATGTTTTGACCTCAC TATTCCATACCTTAAAGAAAGGGTACAATTTGGAAAGAGAATATTCGATTTTCAGGGGCT CCAACACCAAGTGGCTCATACGGCCACCCAGCTAGAAGCTGCGAGACTGCTCACATACAA CGCTGCTAGACTTCTAGAAGCTGGAAGGCCATTCATTAAGGAAGCATCTATGGCCAAATA CTATGCATCAGAGGTTGCAATCCAAACAACTAATAAGTGTATTGAGTGGATGGGAGCAGT AGGCTACACCAAAGATTATCCTATGGAAAAGTATTTCCGAGACGCGAAGATTGGTACAAT ATATGAAGGAACGTCCAACATACAGCTGAACACCATCGCAAAGAATGTCAGTAAGGAATA CTGACAGCCTCAGGAGTAGAAACCCTCCTGGTGTCACTGGTGTGAAACTTTCACTCTTGT GCCTTGTTGGGGGCCATAAAGCCCCATCTCGTTTTCATCAAATGATTTTATTCAGGCCCT TAAGTCTTGGATTTCAAGGTAGACCTTTTCTGTTTTCTCTTTCCAATCCACTTAAGTTAG GTACAGAAAATTATTTTTAAAATTTGGGAAGTGGAATTCTCTGGCAGCTCAGCAGGCTAA GGATCTCGCATTGTCACTGCTGTGGCTCAGGTCATTGCTGTGACGTGGGTTTGATCCCTG GCCCAGGAACTTCCTCATGCTGGAGGTGCAGTCTAAAACAAACAAAATTAAATTTTAAAA ATAAAATAGAATAAAATTTGAGAAGAAATGCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCGCACCCGAGGCGTCGGAGCGCAGAGCAGAAGCGCCTACTCAAGGCCTTGCGAAAT TGTCCGAGGTACCAGTCCCGGTGCGCTGATGGAGGGATCCGCTGGTCGGCTGCTGCGCGG CAGCGCGCTGCTAAGAACAAACTTCCCAACTTGCCTGTCTTCATGGAAAAATCCTCCTCG TGTCCTGAAATCCTCCCAGCCAGCTCCACTCAAAACAACAAATAATGGCCTGTCTTACAG CCCCCTGCAGACATTTACAGATGAGGAGATGATGATAAAGAACACAGTTAAAAAATTTGC CCAGGAACAAATTGCTCCTTTGGTTTCAAAAATGGATGAAAATTCAAAAATGGAAAAATC AGTCATAGAAGGATTATTTCAACAAGGGTTGATGGGTATTGAAACTGAACCAAAATATGG AGGAACAGGAGCTTCATTTTTTTCCTCTGTCCTGGTGATAGAGGAATTAGCCAAGGTTGA TGCATCTGTGGCTCTGGTATGTGACCTCCAGAACACAGTAATTAACGATCTGATTGGGAG ATTTGGAACAGAAGCACAGAAGGCTACCTATTTGACTAAGCTAGCTACGGAACAATTAGG AAGTTTCTGCCTTTCGGAGCCTTCAGCAGGTAGCGATTCATTCTCTTTGAAGACCAGAGC TGACAAAGATGGAGATTATTATGTCATCAACGGGTCAAAGATGTGGATCACCAGTGCTGA GGATGCTGGGCTCTTCCTGGTGATGGCAAATGTAGACCCTGCCCTTGGGTATAAAGGAAT TACCTGCTTCTTGGTAGATCGTGATACCGAGGGCCTCCGTGTAGGGAAACCGGAGAACAA ATTGGGAATCAGAGCTTCTTCTACCTGCCCGGTAACACTTGAAAATGCCAAGGTTCCAGA AGCCAATATCGTGGGACAGATTGGACATGGCTATAAGTACGCCATTCAGAGTCTTAATAA AGGTAGAATAGGAATTGCGGCACAGATGCTGGGACTGGCTCAAGGATGTTTTGACCTCAC TATTCCATACCTTAAAGAAAGGGTACAATTTGGAAAGAGAATATTCGATTTTCAGGGGCT CCAACACCAAGTGGCTCATACGGCCACCCAGCTAGAAGCTGCGAGACTGCTCACATACAA CGCTGCTAGACTTCTAGAAGCTGGAAGGCCATTCATTAAGGAAGCATCTATGGCCAAATA CTATGCATCAGAGGTTGCAATCCAAACAACTAATAAGTGTATTGAGTGGATGGGAGCAGT AGGCTACACCAAAGATTATCCTATGGAAAAGTATTTCCGAGACGCGAAGATTGGTACAAT ATATGAAGGAACGTCCAACATACAGCTGAACACCATCGCAAAGAATGTCAGTAAGGAATA CTGACAGCCTCAGGAGTAGAAACCCTCCTGGTGTCACTGGTGTGAAACTTTCACTCTTGT GCCTTGTTGGGGGCCATAAAGCCCCATCTCGTTTTCATCAAATGATTTTATTCAGGCCCT TAAGTCTTGGATTTCAAGGTAGACCTTTTCTGTTTTCTCTTTCCAATCCACTTAAGTTAG GTACAGAAAATTATTTTTAAAATTTGGGAAGTGGAATTCTCTGGCAGCTCAGCAGGCTAA GGATCTCGCATTGTCACTGCTGTGGCTCAGGTCATTGCTGTGACGTGGGTTTGATCCCTG GCCCAGGAACTTCCTCATGCTGGAGGTGCAGTCTAAAACAAACAAAATTAAATTTTAAAA ATAAAATAGAATAAAATTTGAGAAGAAATGCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 130-287, gnl|bosTau2|chr26 (27919033-27918873) | |
| 130-287, gnl|Hg17|chr10 (124783861-124784021) | |
| 130-287, gnl|Mm7|chr7 (127781451-127781611) | |
| 388-592, gnl|bosTau2|chr26 (27915863-27915659) | |
| 388-592, gnl|Hg17|chr10 (124789971-124790175) | |
| 388-592, gnl|Mm7|chr7 (127785408-127785612) | |
| 601-757, gnl|bosTau2|chr26 (27914942-27914786) | |
| 601-757, gnl|Hg17|chr10 (124790720-124790876) | |
| 601-757, gnl|Mm7|chr7 (127786932-127787088) | |
| 767-894, gnl|bosTau2|chr26 (27913605-27913478) | |
| 767-894, gnl|canFam2|chr28 (35591284-35591424) | |
| 767-894, gnl|danRer3|chrNA (203862239-203862108) | |
| 767-894, gnl|dasNov1|scaffold_11744 (12998-12858) | |
| 767-894, gnl|echTel1|scaffold_284527 (37487-37631) | |
| 767-894, gnl|galGal2|chr6 (30516428-30516564) | |
| 767-894, gnl|hg17|chr10 (124792550-124792690) | |
| 767-894, gnl|Hg17|chr10 (124792552-124792679) | |
| 767-894, gnl|loxAfr1|scaffold_9194 (78330-78190) | |
| 767-894, gnl|mm7|chr7 (127788916-127789056) | |
| 767-894, gnl|Mm7|chr7 (127788918-127789045) | |
| 767-894, gnl|monDom2|scaffold_14 (35939562-35939422) | |
| 767-894, gnl|panTro1|chr8 (127097096-127097237) | |
| 767-894, gnl|rheMac2|chr9 (122633575-122633715) | |
| 767-894, gnl|rn3|chr1 (191163624-191163764) | |
| 767-894, gnl|tetNig1|chrUn_random (129521016-129521155) | |
| 767-894, gnl|xenTro1|scaffold_97 (1790002-1790142) | |
| 1070-1215, gnl|bosTau2|chr26 (27906547-27906402) | |
| 1070-1215, gnl|canFam2|chr28 (35598696-35598852) | |
| 1070-1215, gnl|danRer3|chrNA (203861554-203861412) | |
| 1070-1215, gnl|dasNov1|scaffold_89222 (6843-6690) | |
| 1070-1215, gnl|echTel1|scaffold_284527 (48474-48637) | |
| 1070-1215, gnl|fr1|chrUn (25379228-25379374) | |
| 1070-1215, gnl|galGal2|chr6 (30520340-30520486) | |
| 1070-1215, gnl|hg17|chr10 (124800550-124800707) | |
| 1070-1215, gnl|Hg17|chr10 (124800549-124800694) | |
| 1070-1215, gnl|loxAfr1|scaffold_9194 (69111-68956) | |
| 1070-1215, gnl|mm7|chr7 (127798178-127798333) | |
| 1070-1215, gnl|Mm7|chr7 (127798177-127798322) | |
| 1070-1215, gnl|monDom2|scaffold_14 (35921785-35921630) | |
| 1070-1215, gnl|oryCun1|scaffold_210650 (25264-25419) | |
| 1070-1215, gnl|rheMac2|chr9 (122641603-122641760) | |
| 1070-1215, gnl|rn3|chr1 (191172898-191173053) | |
| 1070-1215, gnl|tetNig1|chrUn_random (129521802-129521948) | |
| 1070-1215, gnl|xenTro1|scaffold_97 (1792071-1792213) | |
| 1313-1590, gnl|bosTau2|chr26 (27903227-27902956) | |
| 1313-1590, gnl|Hg17|chr10 (124803200-124803488) | |
| 1313-1590, gnl|Mm7|chr7 (127801309-127801617) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-287, gnl|bosTau2|chr26 (27919033-27918873) | |
| 130-287, gnl|Hg17|chr10 (124783861-124784021) | |
| 130-287, gnl|Mm7|chr7 (127781451-127781611) | |
| 388-592, gnl|bosTau2|chr26 (27915863-27915659) | |
| 388-592, gnl|Hg17|chr10 (124789971-124790175) | |
| 388-592, gnl|Mm7|chr7 (127785408-127785612) | |
| 601-757, gnl|bosTau2|chr26 (27914942-27914786) | |
| 601-757, gnl|Hg17|chr10 (124790720-124790876) | |
| 601-757, gnl|Mm7|chr7 (127786932-127787088) | |
| 767-894, gnl|bosTau2|chr26 (27913605-27913478) | |
| 767-894, gnl|canFam2|chr28 (35591284-35591424) | |
| 767-894, gnl|danRer3|chrNA (203862239-203862108) | |
| 767-894, gnl|dasNov1|scaffold_11744 (12998-12858) | |
| 767-894, gnl|echTel1|scaffold_284527 (37487-37631) | |
| 767-894, gnl|galGal2|chr6 (30516428-30516564) | |
| 767-894, gnl|hg17|chr10 (124792550-124792690) | |
| 767-894, gnl|Hg17|chr10 (124792552-124792679) | |
| 767-894, gnl|loxAfr1|scaffold_9194 (78330-78190) | |
| 767-894, gnl|mm7|chr7 (127788916-127789056) | |
| 767-894, gnl|Mm7|chr7 (127788918-127789045) | |
| 767-894, gnl|monDom2|scaffold_14 (35939562-35939422) | |
| 767-894, gnl|panTro1|chr8 (127097096-127097237) | |
| 767-894, gnl|rheMac2|chr9 (122633575-122633715) | |
| 767-894, gnl|rn3|chr1 (191163624-191163764) | |
| 767-894, gnl|tetNig1|chrUn_random (129521016-129521155) | |
| 767-894, gnl|xenTro1|scaffold_97 (1790002-1790142) | |
| 1070-1215, gnl|bosTau2|chr26 (27906547-27906402) | |
| 1070-1215, gnl|canFam2|chr28 (35598696-35598852) | |
| 1070-1215, gnl|danRer3|chrNA (203861554-203861412) | |
| 1070-1215, gnl|dasNov1|scaffold_89222 (6843-6690) | |
| 1070-1215, gnl|echTel1|scaffold_284527 (48474-48637) | |
| 1070-1215, gnl|fr1|chrUn (25379228-25379374) | |
| 1070-1215, gnl|galGal2|chr6 (30520340-30520486) | |
| 1070-1215, gnl|hg17|chr10 (124800550-124800707) | |
| 1070-1215, gnl|Hg17|chr10 (124800549-124800694) | |
| 1070-1215, gnl|loxAfr1|scaffold_9194 (69111-68956) | |
| 1070-1215, gnl|mm7|chr7 (127798178-127798333) | |
| 1070-1215, gnl|Mm7|chr7 (127798177-127798322) | |
| 1070-1215, gnl|monDom2|scaffold_14 (35921785-35921630) | |
| 1070-1215, gnl|oryCun1|scaffold_210650 (25264-25419) | |
| 1070-1215, gnl|rheMac2|chr9 (122641603-122641760) | |
| 1070-1215, gnl|rn3|chr1 (191172898-191173053) | |
| 1070-1215, gnl|tetNig1|chrUn_random (129521802-129521948) | |
| 1070-1215, gnl|xenTro1|scaffold_97 (1792071-1792213) | |
| 1313-1590, gnl|bosTau2|chr26 (27903227-27902956) | |
| 1313-1590, gnl|Hg17|chr10 (124803200-124803488) | |
| 1313-1590, gnl|Mm7|chr7 (127801309-127801617) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| lun (0.902935) | |
| pro (0.512033) | |
| hea (0.408998) | |
| nlu (0.383362) | |
| nje (0.33184) | |
| eli (0.303628) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.902935) | |
| pro (0.512033) | |
| hea (0.408998) | |
| nlu (0.383362) | |
| nje (0.33184) | |
| eli (0.303628) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |