Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F020202.5

Sequence:


               
               GTTCACATCCAGCATCACCATGAAGTCCTGCTTGGTCAGCCACTCACTGGGAGCCAGGGG
CGTGCAAATGCCAGCGTTGTTCACCAGGCCCCAGAGTCCTCTGTCCCCCACACGCTCCTT
CACCCACTCCTTGGCCGCAGCGACGCTCTCTGTCTTGGTCACGTCCAGGAGCACCGTCTC
CAGCCTGTCTGACGTCTGCTTCCTCAGCTGCTGGGCCCCCTGCTCCGTCAGACATGCAGC
CAGGACCCTCAAGCCCCGCAGGTCCAGCTGCCTGGCCAGCAGGTTCCCGAAGCCCGAGTC
ACAGCCCGTGATGAAGACATACTTGTCCCTCAGGTGGCTCACCACCTGCCTCTCCCGCTG
CCAGCGCAGGAGGTAGTACAGGCCCACGAGGACCGCCAGGTACACCCACATGGCTTTGCG
GGGGACAGAAACAGACAGGCTGGGGTAAGACTGGAGTTTGGCTGCTGCCCAAACAGGAGG
ACTTACGAACAGACAGGCTATTGGTTGGCCGGTCAGCCTCAGGCTCTCTGGCAGGGAGTC
CTCAGGTCTTTCCCAATCATCATTCTTGCTTCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCACATCCAGCATCACCATGAAGTCCTGCTTGGTCAGCCACTCACTGGGAGCCAGGGG
CGTGCAAATGCCAGCGTTGTTCACCAGGCCCCAGAGTCCTCTGTCCCCCACACGCTCCTT
CACCCACTCCTTGGCCGCAGCGACGCTCTCTGTCTTGGTCACGTCCAGGAGCACCGTCTC
CAGCCTGTCTGACGTCTGCTTCCTCAGCTGCTGGGCCCCCTGCTCCGTCAGACATGCAGC
CAGGACCCTCAAGCCCCGCAGGTCCAGCTGCCTGGCCAGCAGGTTCCCGAAGCCCGAGTC
ACAGCCCGTGATGAAGACATACTTGTCCCTCAGGTGGCTCACCACCTGCCTCTCCCGCTG
CCAGCGCAGGAGGTAGTACAGGCCCACGAGGACCGCCAGGTACACCCACATGGCTTTGCG
GGGGACAGAAACAGACAGGCTGGGGTAAGACTGGAGTTTGGCTGCTGCCCAAACAGGAGG
ACTTACGAACAGACAGGCTATTGGTTGGCCGGTCAGCCTCAGGCTCTCTGGCAGGGAGTC
CTCAGGTCTTTCCCAATCATCATTCTTGCTTCTGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49227085|ref|NP_955017.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49227085|ref|NP_955017.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               98-567, gnl|bosTau2|chr5 (32782338-32781870)
               

               
               98-567, gnl|Hg17|chr12 (55637200-55637671)
               


               
               132-243, gnl|bosTau2|chr3 (13486596-13486485)
               

               
               132-243, gnl|Hg17|chr12 (55637234-55637345)
               

               
               132-243, gnl|Mm7|chr10 (127325951-127325840)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-567, gnl|bosTau2|chr5 (32782338-32781870)
               

               
               98-567, gnl|Hg17|chr12 (55637200-55637671)
               


               
               132-243, gnl|bosTau2|chr3 (13486596-13486485)
               

               
               132-243, gnl|Hg17|chr12 (55637234-55637345)
               

               
               132-243, gnl|Mm7|chr10 (127325951-127325840)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	98-567, gnl\|bosTau2\|chr5 (32782338-32781870)
	98-567, gnl\|Hg17\|chr12 (55637200-55637671)

	132-243, gnl\|bosTau2\|chr3 (13486596-13486485)
	132-243, gnl\|Hg17\|chr12 (55637234-55637345)
	132-243, gnl\|Mm7\|chr10 (127325951-127325840)