Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F020205.5

Sequence:


               
               GTCTGCTTCCTCATAGGAGCAACAGGTGATGGATCCCAAAAGCCAGCGTCTTCGGCTTAA
CGATGGTCACTTCATTCCTGTACTGGGATTTGGTACCTATGCACCTGAAGAGGTTCCCAA
GAGTGAAGCTCTGGAGGCCACCAAATATGCCATAGAAGTTGGGTTCCGTCACATCGATAG
TGCTTATTTATACCAAAATGAAGAGCAGGTTGGACAGGCCATTCGAAGCAAGATTGCAGA
TGGCACCGTGAAGAGAGAAGACATATTCTACACGTCAAAGCTTTGGGCCACTTTCCTTCG
ACCAGAGTTGGTCCGACCAGCCTTGGAAAAGTCCCTGAAGAATCTCCAACTGGACTATGT
GGATCTCTATATTATTCATTTTCCAGTGGCTCTGAAGCCCGGGGAGGAACTTTTGCCAAC
AGATGAAAACGGAAAAGCACTATTTGACACAGTGGATCTCTGTCGCACGTGGGAGGCCTT
GGAGAAGTGTAAGGACGCAGGACTGACCAAGTCCATCGGCGTGTCCAACTTTAACCACCA
ACAGCTGGAGAGGATCCTGAACAAGCCAGGGCTCAAGTACAAGCCCGTCTGCAACCAGGT
GGAATGTCATCCTTACCTCAACCAGAGCAAGCTGTTGGATTTCTGCAAGTCAAAAGATAT
CATTCCAGTTGCCTATTCTGCTCTGGGATCCCAAAGAGTAAAAGGATGGGTGAACCTAAA
CCACCCAGTTCTCTTGGAAGACCCAGTTCTTCATGCCATTGCTAAAAAGCACAAGCAAAC
CTCAGCCGTAATTGCCCTTCGCTACCAGCTGCAGCGTGGAGTTGTGGTCCTGGCCAAGAG
TTACAATAAGAAGCGGATCAAAGAAAACCTGCAGGTTTTTAACTTTGAATTGCCTCCAGA
AGATATGAAAACAATCGATGGCCTCAACCAAAATTTAAGATACTGTGATTTTTCATATGC
CGTTGGTCACCCTGACTATCCATTTTGACCACGAGTTACTCATCATGTATTCTACCAGAA
CATCATGCTTCCAGAGCTGTGAAGAGGATTTCTGTACTTGATGGAGGTGTTTAAAAGAAG
TGTCTGCACTTCTGAAAGCTTGCCTTTCCTTTAAAAAAAAATGTATGACATAGTAAAGGC
TTCAAATAAGTATGCTTGTCTTTCCTGATAATACAAGAATACATACAAAGGACAAAAAAG
TTTAGAGAATAAAAGGCAAAGAATAGAAAATAAAGCTAACCTATGATTAATCCCTTTAAT
AAAACTTGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGCTTCCTCATAGGAGCAACAGGTGATGGATCCCAAAAGCCAGCGTCTTCGGCTTAA
CGATGGTCACTTCATTCCTGTACTGGGATTTGGTACCTATGCACCTGAAGAGGTTCCCAA
GAGTGAAGCTCTGGAGGCCACCAAATATGCCATAGAAGTTGGGTTCCGTCACATCGATAG
TGCTTATTTATACCAAAATGAAGAGCAGGTTGGACAGGCCATTCGAAGCAAGATTGCAGA
TGGCACCGTGAAGAGAGAAGACATATTCTACACGTCAAAGCTTTGGGCCACTTTCCTTCG
ACCAGAGTTGGTCCGACCAGCCTTGGAAAAGTCCCTGAAGAATCTCCAACTGGACTATGT
GGATCTCTATATTATTCATTTTCCAGTGGCTCTGAAGCCCGGGGAGGAACTTTTGCCAAC
AGATGAAAACGGAAAAGCACTATTTGACACAGTGGATCTCTGTCGCACGTGGGAGGCCTT
GGAGAAGTGTAAGGACGCAGGACTGACCAAGTCCATCGGCGTGTCCAACTTTAACCACCA
ACAGCTGGAGAGGATCCTGAACAAGCCAGGGCTCAAGTACAAGCCCGTCTGCAACCAGGT
GGAATGTCATCCTTACCTCAACCAGAGCAAGCTGTTGGATTTCTGCAAGTCAAAAGATAT
CATTCCAGTTGCCTATTCTGCTCTGGGATCCCAAAGAGTAAAAGGATGGGTGAACCTAAA
CCACCCAGTTCTCTTGGAAGACCCAGTTCTTCATGCCATTGCTAAAAAGCACAAGCAAAC
CTCAGCCGTAATTGCCCTTCGCTACCAGCTGCAGCGTGGAGTTGTGGTCCTGGCCAAGAG
TTACAATAAGAAGCGGATCAAAGAAAACCTGCAGGTTTTTAACTTTGAATTGCCTCCAGA
AGATATGAAAACAATCGATGGCCTCAACCAAAATTTAAGATACTGTGATTTTTCATATGC
CGTTGGTCACCCTGACTATCCATTTTGACCACGAGTTACTCATCATGTATTCTACCAGAA
CATCATGCTTCCAGAGCTGTGAAGAGGATTTCTGTACTTGATGGAGGTGTTTAAAAGAAG
TGTCTGCACTTCTGAAAGCTTGCCTTTCCTTTAAAAAAAAATGTATGACATAGTAAAGGC
TTCAAATAAGTATGCTTGTCTTTCCTGATAATACAAGAATACATACAAAGGACAAAAAAG
TTTAGAGAATAAAAGGCAAAGAATAGAAAATAAAGCTAACCTATGATTAATCCCTTTAAT
AAAACTTGGCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9GKI1_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GKI1_SHEEP

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               111-280, gnl|bosTau2|chr13 (31981242-31981073)
               

               
               111-280, gnl|Hg17|chr10 (5128600-5128769)
               

               
               111-280, gnl|Mm7|chr13 (4120456-4120625)
               


               
               474-601, gnl|bosTau2|chr13 (28841400-28841273)
               

               
               474-601, gnl|Hg17|chr10 (5131517-5131644)
               

               
               474-601, gnl|Mm7|chr13 (4123335-4123462)
               


               
               708-876, gnl|bosTau2|chr13 (31975778-31975610)
               

               
               708-876, gnl|Hg17|chr10 (5134676-5134844)
               

               
               708-876, gnl|Mm7|chr13 (4127295-4127463)
               


               
               962-1272, gnl|bosTau2|chr13 (28883523-28883203)
               

               
               962-1272, gnl|Hg17|chr10 (5186373-5186081)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-280, gnl|bosTau2|chr13 (31981242-31981073)
               

               
               111-280, gnl|Hg17|chr10 (5128600-5128769)
               

               
               111-280, gnl|Mm7|chr13 (4120456-4120625)
               


               
               474-601, gnl|bosTau2|chr13 (28841400-28841273)
               

               
               474-601, gnl|Hg17|chr10 (5131517-5131644)
               

               
               474-601, gnl|Mm7|chr13 (4123335-4123462)
               


               
               708-876, gnl|bosTau2|chr13 (31975778-31975610)
               

               
               708-876, gnl|Hg17|chr10 (5134676-5134844)
               

               
               708-876, gnl|Mm7|chr13 (4127295-4127463)
               


               
               962-1272, gnl|bosTau2|chr13 (28883523-28883203)
               

               
               962-1272, gnl|Hg17|chr10 (5186373-5186081)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               lun (3.31076)
               

               
               tra (1.96947)
               

               
               bla (0.87043)
               

               
               cje (0.495704)
               

               
               ski (0.440205)
               

               
               lyg (0.399308)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               cli (0.305623)
               

               
               nmm (0.265604)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (3.31076)
               

               
               tra (1.96947)
               

               
               bla (0.87043)
               

               
               cje (0.495704)
               

               
               ski (0.440205)
               

               
               lyg (0.399308)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               cli (0.305623)
               

               
               nmm (0.265604)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)

	111-280, gnl\|bosTau2\|chr13 (31981242-31981073)
	111-280, gnl\|Hg17\|chr10 (5128600-5128769)
	111-280, gnl\|Mm7\|chr13 (4120456-4120625)

	474-601, gnl\|bosTau2\|chr13 (28841400-28841273)
	474-601, gnl\|Hg17\|chr10 (5131517-5131644)
	474-601, gnl\|Mm7\|chr13 (4123335-4123462)

	708-876, gnl\|bosTau2\|chr13 (31975778-31975610)
	708-876, gnl\|Hg17\|chr10 (5134676-5134844)
	708-876, gnl\|Mm7\|chr13 (4127295-4127463)

	962-1272, gnl\|bosTau2\|chr13 (28883523-28883203)
	962-1272, gnl\|Hg17\|chr10 (5186373-5186081)

	lun (3.31076)
	tra (1.96947)
	bla (0.87043)
	cje (0.495704)
	ski (0.440205)
	lyg (0.399308)
	cmu (0.372787)
	sto (0.359648)
	rec (0.346141)
	cli (0.305623)
	nmm (0.265604)
	nlu (0.191681)
	sin (0.174948)
	duo (0.172801)
	cut (0.169924)