Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F080204.5

Sequence:


               
               AAAGACTTGGGCTGCCCACGCGATCGGTCCTCTGCGACAGACTCTCCGTACCGATTGCCG
CACCGCACCATGGACTCCCTGATGCAGGTGGTCAATTTCGGGGCCGGGCCAGCCAAGCTG
CCGCGCTCGGTATTGTTGGAGATACAAAAAGAATTATTAGACTACAAAGGAGTTGGGATT
AGTGTTCTTGAAATGAGCCACAGGTCATCAGATTTTTCTAAAATTATTAACAACACAGAG
AATCTTGTGCGGGAATTGCTATCCATTCCAGACAACTACAAGGTGATTTTTGTGCAAGGA
GGTGGGTGTGGCCAGTTCAGTGCTGTCCCCTTAAACCTGATTGGCCTGAAAGCAGGAAGG
TGTGCTGACTATGTGGTGACAGGATCCTGGTCAGCTAAGGCTGCAGAAGAAGCCAAGAAA
TTTGGGACTGTGAATATTGTCCACCCTAAACTTGGGAGTTACACAAAAATTCCAGATCCG
AGCACCTGGAACCTCAGCCCAGACGCTTCCTACGTATATTACTGTGCCAATGAGACCGTG
CATGGAGTGGAGTTTGACTTTATCCCAGATGTCAAAGGAGCAGTGCTGGTCTCTGACATG
TCCTCAAACTTCCTGTCCAAGCCAGTGGATGTGTCCAAGTTTGGTGTGATTTTTGCTGGT
GCCCAGAAGAACGTTGGCTCTGCAGGGGTCACGGTGGTGATCGTCCGAGATGACCTGCTG
GGGTTTGCCCTCAGAGAGTGTCCCTCAATCCTGGATTACAAAGTGCAGGCTGGGAATAAC
TCCCTATACAACACACCTCCCTGCTTCAGCGTCTATGTCATGGGCTTGGTCCTGGAGTGG
ATTAAGAACAACGGCGGTGCTGCAGCCATGGAGAAGCTTAGCTGCATCAAATCACAAATG
ATTTATGATATTATCGATAATTCTCAAGGATTCTATGTATGTCCAGTGGAGCCCCAGCAT
AGAAGCAAAATGAATATTCCATTTCGCATTGGCAACACCAAAGGAGATGATGCTCTAGAG
AAAAGGTTTCTTGATAAAGCTCTTGAGCTGAAAATGATCTCCCTGAAAGGGCACAGGTCC
GTGGGAGGCATCCGGGCATCTCTCTATAATGCTGTGACCATTGAAGATGTCCAGAAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACTTGGGCTGCCCACGCGATCGGTCCTCTGCGACAGACTCTCCGTACCGATTGCCG
CACCGCACCATGGACTCCCTGATGCAGGTGGTCAATTTCGGGGCCGGGCCAGCCAAGCTG
CCGCGCTCGGTATTGTTGGAGATACAAAAAGAATTATTAGACTACAAAGGAGTTGGGATT
AGTGTTCTTGAAATGAGCCACAGGTCATCAGATTTTTCTAAAATTATTAACAACACAGAG
AATCTTGTGCGGGAATTGCTATCCATTCCAGACAACTACAAGGTGATTTTTGTGCAAGGA
GGTGGGTGTGGCCAGTTCAGTGCTGTCCCCTTAAACCTGATTGGCCTGAAAGCAGGAAGG
TGTGCTGACTATGTGGTGACAGGATCCTGGTCAGCTAAGGCTGCAGAAGAAGCCAAGAAA
TTTGGGACTGTGAATATTGTCCACCCTAAACTTGGGAGTTACACAAAAATTCCAGATCCG
AGCACCTGGAACCTCAGCCCAGACGCTTCCTACGTATATTACTGTGCCAATGAGACCGTG
CATGGAGTGGAGTTTGACTTTATCCCAGATGTCAAAGGAGCAGTGCTGGTCTCTGACATG
TCCTCAAACTTCCTGTCCAAGCCAGTGGATGTGTCCAAGTTTGGTGTGATTTTTGCTGGT
GCCCAGAAGAACGTTGGCTCTGCAGGGGTCACGGTGGTGATCGTCCGAGATGACCTGCTG
GGGTTTGCCCTCAGAGAGTGTCCCTCAATCCTGGATTACAAAGTGCAGGCTGGGAATAAC
TCCCTATACAACACACCTCCCTGCTTCAGCGTCTATGTCATGGGCTTGGTCCTGGAGTGG
ATTAAGAACAACGGCGGTGCTGCAGCCATGGAGAAGCTTAGCTGCATCAAATCACAAATG
ATTTATGATATTATCGATAATTCTCAAGGATTCTATGTATGTCCAGTGGAGCCCCAGCAT
AGAAGCAAAATGAATATTCCATTTCGCATTGGCAACACCAAAGGAGATGATGCTCTAGAG
AAAAGGTTTCTTGATAAAGCTCTTGAGCTGAAAATGATCTCCCTGAAAGGGCACAGGTCC
GTGGGAGGCATCCGGGCATCTCTCTATAATGCTGTGACCATTGAAGATGTCCAGAAGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|25140375|gb|AAN71736.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|25140375|gb|AAN71736.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               939-1078, gnl|bosTau2|chr8 (26141123-26141262)
               

               
               939-1078, gnl|Hg17|chr9 (78172521-78172660)
               

               
               939-1078, gnl|Mm7|chr19 (15607995-15607856)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               939-1078, gnl|bosTau2|chr8 (26141123-26141262)
               

               
               939-1078, gnl|Hg17|chr9 (78172521-78172660)
               

               
               939-1078, gnl|Mm7|chr19 (15607995-15607856)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

	939-1078, gnl\|bosTau2\|chr8 (26141123-26141262)
	939-1078, gnl\|Hg17\|chr9 (78172521-78172660)
	939-1078, gnl\|Mm7\|chr19 (15607995-15607856)

	cty (0.20816)
	fcc (0.197785)
	nep (0.183925)
	fbs (0.175346)
	cli (0.152812)
	lun (0.150489)
	kid (0.129735)