Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F100043.5

Sequence:


               
               GGCGGCTCGGGATGCCCGGCTCGGGCCGTAGCTGCGAGGCCCTGCTTCACGCCGCCCGTC
TAGGTGCTGGGAGGCAGGGCAAGGGATGCCTTTCTGCTGCCACTTTGTCTTGGCATTCAA
GAGGGTGCCCAGCCGCGCTTTAGAGAGATTTGCGGTAGGTCGGAGTCCGTCGGACAAATG
AGGAAACTGAGGGCGAGAAGTGGGAAGCGGAGCCATCTCCTGGGCCGCGCAGCCTGCTGA
GCGAAAGCCGGGGACCAAGACCTCGGGGTCTGCGCTCCCAGGCCCGCTGGGGTCGGTGGG
TGTGGGGGGCAGGAGCCCGGCTCCGTCCCCTGCACCCCACTGCACCCCTCGCCGCCGGAG
GAGACTCCCTGGAGGAGGAGCTCAGGACGCGGAGGAGGAGCCAGGACAGCCCCTGCGAGC
GGGACACGATCCTCCAAGATAAGAGGCCGAGCCCGGGAGGAAGCCCGTCAGCCGGGCCAG
CCGAGAAAGCTCCGGGAGCGGCCTCATGGAAGAGAAGCAGATCCTGTGCGTGGGGCTAGT
GGTGCTGGACATCATCAATGTGGTGGACAAGTACCCGGAGGAGGACACGGACAGCAGGTA
GGGATGCCCGGGCCTCTCGGAAACCTCAGGGACCGCTGCCGCCGCCGCCTTGTGCCCGGC
GACCAAGAATACGGGGCTGCGGAGCCGGGGCCCCGTGCCCTCTGCCTGTGGCCTTGAGTG
CATTGTGTTCGCCGGTTCCCATTTCCACCCTGGGACCGGGTCAGACATCATTGTCCTCAT
TTTACCGAGTAAGCAAATAGAGACCCCGAGAGTCGCAGTGACTTATGCGAGGGCAAGCAG
CTAAGAAGGTGCATGCAGGGCCAGTTTCTTTGTGTTTTCCTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCTCGGGATGCCCGGCTCGGGCCGTAGCTGCGAGGCCCTGCTTCACGCCGCCCGTC
TAGGTGCTGGGAGGCAGGGCAAGGGATGCCTTTCTGCTGCCACTTTGTCTTGGCATTCAA
GAGGGTGCCCAGCCGCGCTTTAGAGAGATTTGCGGTAGGTCGGAGTCCGTCGGACAAATG
AGGAAACTGAGGGCGAGAAGTGGGAAGCGGAGCCATCTCCTGGGCCGCGCAGCCTGCTGA
GCGAAAGCCGGGGACCAAGACCTCGGGGTCTGCGCTCCCAGGCCCGCTGGGGTCGGTGGG
TGTGGGGGGCAGGAGCCCGGCTCCGTCCCCTGCACCCCACTGCACCCCTCGCCGCCGGAG
GAGACTCCCTGGAGGAGGAGCTCAGGACGCGGAGGAGGAGCCAGGACAGCCCCTGCGAGC
GGGACACGATCCTCCAAGATAAGAGGCCGAGCCCGGGAGGAAGCCCGTCAGCCGGGCCAG
CCGAGAAAGCTCCGGGAGCGGCCTCATGGAAGAGAAGCAGATCCTGTGCGTGGGGCTAGT
GGTGCTGGACATCATCAATGTGGTGGACAAGTACCCGGAGGAGGACACGGACAGCAGGTA
GGGATGCCCGGGCCTCTCGGAAACCTCAGGGACCGCTGCCGCCGCCGCCTTGTGCCCGGC
GACCAAGAATACGGGGCTGCGGAGCCGGGGCCCCGTGCCCTCTGCCTGTGGCCTTGAGTG
CATTGTGTTCGCCGGTTCCCATTTCCACCCTGGGACCGGGTCAGACATCATTGTCCTCAT
TTTACCGAGTAAGCAAATAGAGACCCCGAGAGTCGCAGTGACTTATGCGAGGGCAAGCAG
CTAAGAAGGTGCATGCAGGGCCAGTTTCTTTGTGTTTTCCTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1743264|emb|CAA70521.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1743264|emb|CAA70521.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-351, - strand, RNAz p=0.900983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-351, - strand, RNAz p=0.900983

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               73-695, gnl|bosTau2|chr11 (53047932-53048542)
               

               
               73-695, gnl|Hg17|chr2 (27221369-27221955)
               


               
               710-853, gnl|bosTau2|chr11 (53048637-53048787)
               

               
               710-853, gnl|Hg17|chr2 (27222077-27222211)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-695, gnl|bosTau2|chr11 (53047932-53048542)
               

               
               73-695, gnl|Hg17|chr2 (27221369-27221955)
               


               
               710-853, gnl|bosTau2|chr11 (53048637-53048787)
               

               
               710-853, gnl|Hg17|chr2 (27222077-27222211)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               cty (0.10408)

	73-695, gnl\|bosTau2\|chr11 (53047932-53048542)
	73-695, gnl\|Hg17\|chr2 (27221369-27221955)

	710-853, gnl\|bosTau2\|chr11 (53048637-53048787)
	710-853, gnl\|Hg17\|chr2 (27222077-27222211)