Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F120195.5

Sequence:


               
               ATTTTGTTCATCCTCCTCCTCCTCCAGCTCCTCCTGGTTGGAGCGCAGTGTCCGGAGCGG
GCTGGGGGGAGAGAGCCCGAGAGCAGGGTTCGGTGCCTTTTCCTCTGTCCCCAGCCGGTG
CCCGGAGCCCCCCTCCCCTTCCTCCCCACACCCTCCCTTCCCCAGCCCTGCCCTCCCCCT
TGTCCCGGGATCGCTCCGTCGCACCCACCATGATGGAAGACGACGGGCAGCCCCGGACTC
TATACGTAGGTAACCTCTCCAGAGATGTAACAGAAGTTCTTATTCTTCAGTTATTCAGTC
AGATTGGACCCTGTAAAAGCTGTAAAATGATAACAGAGTCATGGGATACAGTTTATGAAG
GATTATGATGCATAAGTAGAATTCATCCCTTTGAAAATAATGTTGGGAGAGAAGAGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGTTCATCCTCCTCCTCCTCCAGCTCCTCCTGGTTGGAGCGCAGTGTCCGGAGCGG
GCTGGGGGGAGAGAGCCCGAGAGCAGGGTTCGGTGCCTTTTCCTCTGTCCCCAGCCGGTG
CCCGGAGCCCCCCTCCCCTTCCTCCCCACACCCTCCCTTCCCCAGCCCTGCCCTCCCCCT
TGTCCCGGGATCGCTCCGTCGCACCCACCATGATGGAAGACGACGGGCAGCCCCGGACTC
TATACGTAGGTAACCTCTCCAGAGATGTAACAGAAGTTCTTATTCTTCAGTTATTCAGTC
AGATTGGACCCTGTAAAAGCTGTAAAATGATAACAGAGTCATGGGATACAGTTTATGAAG
GATTATGATGCATAAGTAGAATTCATCCCTTTGAAAATAATGTTGGGAGAGAAGAGCAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-248, - strand, RNAz p=0.930568

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-248, - strand, RNAz p=0.930568

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               31-174, - strand, RNAmicro p=0.941106

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               31-174, - strand, RNAmicro p=0.941106

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-248, gnl|bosTau2|chr26 (25632726-25632973)
               

               
               1-248, gnl|Hg17|chr10 (121346176-121345929)
               

               
               1-248, gnl|Mm7|chr7 (124557923-124557676)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr26 (25632726-25632973)
               

               
               1-248, gnl|Hg17|chr10 (121346176-121345929)
               

               
               1-248, gnl|Mm7|chr7 (124557923-124557676)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-248, gnl\|bosTau2\|chr26 (25632726-25632973)
	1-248, gnl\|Hg17\|chr10 (121346176-121345929)
	1-248, gnl\|Mm7\|chr7 (124557923-124557676)