Ss1.1-Liv1-LVRM1G020047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTTTGTCATTGACGTTAGCGGCTCGATGTGGGGGATAAAAATGAAACAGACAGTGGAA GCCATGAAGACCATTCTGGATGACCTCCGGGCTGAGGACCAGTTCTCGTTGGTTGATTTC AACCACAACATTCGAACCTGGAGAAACGATTTAGTCTCCGCTACCAAAACCCAGGTTGCA GACGCCAAGACCTACATTGAGAAGATCCAGCCCAGTGGAGGCACGAATATCAACGAGGCA CTCCTGCGGGCCATCTTCATCCTGAACGAAGCCAATAACTTGGGGCTGCTGGACCCCAAC TCAGTCTCTCTGATCATTTTGGTGTCTGACGGCGATCCAACAGTAGGTGAACTGCAATTG TCAAAAATTCAGAAAAACGTGAAGCAGAACATACAAGACAACGTCTCCTTGTTCAGTCTG GGGATAGGATTCGACGTTGACTATGATTTTTTGAAAAGACTGTCCAATGACAACCGTGGC ATGGCCCAAAGGATTTATGGAAACCAGGACACGGCTTCCCAGCTCAAGAAATTCTACAAC CAGGTCTCTACCCCCTTGCTCCGGAATGTTCAGTTCAACTACCCCCAAGCGTCAGTCACG GATGTCACTCAGAACAGCTTCCCTAACTATTTTGGAGGCTCGGAGATTGTGGTGGCCGGA AAGTTCAACCCTGAGAAGTTGGAACAGCTACAGGGCATCATCACGGCGACTTCGGCCAAC GTGGAGCTCGTCTTGGAGACCCTGGCTGAAATGGACGGCTTGGAGGCTTTCCTCGCCAAA GACAGGCACGCAGACCCGGATTTCACCAAGAAACTGTGGGCCTATCTGACCATCAACCAA CTTCTGGATGAACGGAGCCGGGCTCCCAGCGCTGCCGTTAAAAAGAAGATCACGAAGAGC ATCCTGCAGATGTCGCTGGACCATCACATAGTGACGCCGCTCACGGCCATGGTGGTGGAG AACGAGGCGGGCGACGAGCGCATGCTGGCCGACGCGCCGCCCCAGGACCAGTCTTGCTGC TCAGGTACCCTGAATTACGGCAGAAAAGTTACTCCAAATTCACTCCCATCTTGGGTCAAC CCCTTACCAACGCCGAGGGTGCCGCTGCCCGCGGTAGGACCTTCAGTGATCGAGGCAACG CCTCCTCCACACGTGATGAGAGTCGAAAATGACCCGCACTTCATCATATACCTACCCAAA AGCCAACAGAATATTTGTTTCAATATTGACTCAGAACCTGGAAAAATCCTCAACCTTGTT TCTGATCCAGAATCAGGGATTGTGATCAATGGACAGCTCATCAGTGCCAAGAAACTCAAG GACGGGAAACTAAGCACCTATTTTGGAAAAATAGGGTTTTATTTCCAACACGAAGACGTG AAAGTCGAAATCAGCACCGAGACCATCTCCCTGAGCCGGGGCTCCCGAGTTTCCGTCTTG TCCTGGTCCGACTCAGCTCTCGTCCTTAATCAGAGGGTTCACATCTCGGTGAAGAAAGAG AAAACGGTGACTGTGACTCTGGACCAAGAGGTGTCCTTCTCTGTCTTGCTTCATCGCGTT TGGAAGAAGCATCCGATCAATGTCGACTTTTTGGGGATCTACATCCCCCCCACGACCAAG TTTTCTCCAAGGGCACACGGGCTGATAGGCCAGTTCATGCATGAGCCGGAGATACGCATT TTCAACGAGCGACCAGGAAAGGACCCGGAGAAGCCAGAGGCCAGCATGGAAGTAAAGGGA CAGACGCTGGTTGTCACCAGGGGCCTGCAGAAGGACTACCGGACAGACGGAGTGTTTGGG ACAGATGTGCCTTGCTGGTTTGTGCACAACAGCGGGAAAGGCTTCATCGATGGACATTAC AAGGATTACTTGGTGCCTCTGCTCTACAGCTTTCTCAAGCGGCCTTAAACATTCCTAAGT GGCACGGGGGAGTTCCCTGGTGGCTTAGCAGGTTAAGGATCCAGCGCTGTCACTGCTGTG GCTTGGGTTCGATCCCTGGTCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTTTGTCATTGACGTTAGCGGCTCGATGTGGGGGATAAAAATGAAACAGACAGTGGAA GCCATGAAGACCATTCTGGATGACCTCCGGGCTGAGGACCAGTTCTCGTTGGTTGATTTC AACCACAACATTCGAACCTGGAGAAACGATTTAGTCTCCGCTACCAAAACCCAGGTTGCA GACGCCAAGACCTACATTGAGAAGATCCAGCCCAGTGGAGGCACGAATATCAACGAGGCA CTCCTGCGGGCCATCTTCATCCTGAACGAAGCCAATAACTTGGGGCTGCTGGACCCCAAC TCAGTCTCTCTGATCATTTTGGTGTCTGACGGCGATCCAACAGTAGGTGAACTGCAATTG TCAAAAATTCAGAAAAACGTGAAGCAGAACATACAAGACAACGTCTCCTTGTTCAGTCTG GGGATAGGATTCGACGTTGACTATGATTTTTTGAAAAGACTGTCCAATGACAACCGTGGC ATGGCCCAAAGGATTTATGGAAACCAGGACACGGCTTCCCAGCTCAAGAAATTCTACAAC CAGGTCTCTACCCCCTTGCTCCGGAATGTTCAGTTCAACTACCCCCAAGCGTCAGTCACG GATGTCACTCAGAACAGCTTCCCTAACTATTTTGGAGGCTCGGAGATTGTGGTGGCCGGA AAGTTCAACCCTGAGAAGTTGGAACAGCTACAGGGCATCATCACGGCGACTTCGGCCAAC GTGGAGCTCGTCTTGGAGACCCTGGCTGAAATGGACGGCTTGGAGGCTTTCCTCGCCAAA GACAGGCACGCAGACCCGGATTTCACCAAGAAACTGTGGGCCTATCTGACCATCAACCAA CTTCTGGATGAACGGAGCCGGGCTCCCAGCGCTGCCGTTAAAAAGAAGATCACGAAGAGC ATCCTGCAGATGTCGCTGGACCATCACATAGTGACGCCGCTCACGGCCATGGTGGTGGAG AACGAGGCGGGCGACGAGCGCATGCTGGCCGACGCGCCGCCCCAGGACCAGTCTTGCTGC TCAGGTACCCTGAATTACGGCAGAAAAGTTACTCCAAATTCACTCCCATCTTGGGTCAAC CCCTTACCAACGCCGAGGGTGCCGCTGCCCGCGGTAGGACCTTCAGTGATCGAGGCAACG CCTCCTCCACACGTGATGAGAGTCGAAAATGACCCGCACTTCATCATATACCTACCCAAA AGCCAACAGAATATTTGTTTCAATATTGACTCAGAACCTGGAAAAATCCTCAACCTTGTT TCTGATCCAGAATCAGGGATTGTGATCAATGGACAGCTCATCAGTGCCAAGAAACTCAAG GACGGGAAACTAAGCACCTATTTTGGAAAAATAGGGTTTTATTTCCAACACGAAGACGTG AAAGTCGAAATCAGCACCGAGACCATCTCCCTGAGCCGGGGCTCCCGAGTTTCCGTCTTG TCCTGGTCCGACTCAGCTCTCGTCCTTAATCAGAGGGTTCACATCTCGGTGAAGAAAGAG AAAACGGTGACTGTGACTCTGGACCAAGAGGTGTCCTTCTCTGTCTTGCTTCATCGCGTT TGGAAGAAGCATCCGATCAATGTCGACTTTTTGGGGATCTACATCCCCCCCACGACCAAG TTTTCTCCAAGGGCACACGGGCTGATAGGCCAGTTCATGCATGAGCCGGAGATACGCATT TTCAACGAGCGACCAGGAAAGGACCCGGAGAAGCCAGAGGCCAGCATGGAAGTAAAGGGA CAGACGCTGGTTGTCACCAGGGGCCTGCAGAAGGACTACCGGACAGACGGAGTGTTTGGG ACAGATGTGCCTTGCTGGTTTGTGCACAACAGCGGGAAAGGCTTCATCGATGGACATTAC AAGGATTACTTGGTGCCTCTGCTCTACAGCTTTCTCAAGCGGCCTTAAACATTCCTAAGT GGCACGGGGGAGTTCCCTGGTGGCTTAGCAGGTTAAGGATCCAGCGCTGTCACTGCTGTG GCTTGGGTTCGATCCCTGGTCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 45-163, - strand, RNAz p=0.511096 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-163, - strand, RNAz p=0.511096 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 45-221, gnl|bosTau2|chr13 (8355768-8355592) | |
| 45-221, gnl|canFam2|chr2 (31232341-31232124) | |
| 45-221, gnl|danRer3|chr4 (22946272-22946468) | |
| 45-221, gnl|fr1|chrUn (134684788-134684977) | |
| 45-221, gnl|galGal2|chr1 (6193412-6193226) | |
| 45-221, gnl|hg17|chr10 (7808888-7809104) | |
| 45-221, gnl|Hg17|chr10 (7808912-7809088) | |
| 45-221, gnl|mm7|chr2 (10049754-10049537) | |
| 45-221, gnl|Mm7|chr2 (10049728-10049552) | |
| 45-221, gnl|monDom2|scaffold_30 (4321230-4321449) | |
| 45-221, gnl|oryCun1|scaffold_127495 (13686-13482) | |
| 45-221, gnl|panTro1|chr8 (7910041-7910257) | |
| 45-221, gnl|rheMac2|chr9 (7918949-7919165) | |
| 45-221, gnl|rn3|chr17 (79719274-79719491) | |
| 45-221, gnl|tetNig1|chr19 (539509-539334) | |
| 45-221, gnl|xenTro1|scaffold_934 (311116-311295) | |
| 338-528, gnl|bosTau2|chr13 (8353817-8353627) | |
| 338-528, gnl|Hg17|chr10 (7811912-7812102) | |
| 338-528, gnl|Mm7|chr2 (10046001-10045811) | |
| 854-1025, gnl|bosTau2|chr13 (8349463-8349292) | |
| 854-1025, gnl|Hg17|chr10 (7816890-7817061) | |
| 854-1025, gnl|Mm7|chr2 (10042113-10041942) | |
| 1274-1476, gnl|bosTau2|chr13 (8343291-8343089) | |
| 1274-1476, gnl|Hg17|chr10 (7826048-7826250) | |
| 1274-1476, gnl|Mm7|chr2 (10037261-10037059) | |
| 1758-1922, gnl|bosTau2|chr13 (8339494-8339330) | |
| 1758-1922, gnl|Hg17|chr10 (7831153-7831317) | |
| 1758-1922, gnl|Mm7|chr2 (10034062-10033898) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-221, gnl|bosTau2|chr13 (8355768-8355592) | |
| 45-221, gnl|canFam2|chr2 (31232341-31232124) | |
| 45-221, gnl|danRer3|chr4 (22946272-22946468) | |
| 45-221, gnl|fr1|chrUn (134684788-134684977) | |
| 45-221, gnl|galGal2|chr1 (6193412-6193226) | |
| 45-221, gnl|hg17|chr10 (7808888-7809104) | |
| 45-221, gnl|Hg17|chr10 (7808912-7809088) | |
| 45-221, gnl|mm7|chr2 (10049754-10049537) | |
| 45-221, gnl|Mm7|chr2 (10049728-10049552) | |
| 45-221, gnl|monDom2|scaffold_30 (4321230-4321449) | |
| 45-221, gnl|oryCun1|scaffold_127495 (13686-13482) | |
| 45-221, gnl|panTro1|chr8 (7910041-7910257) | |
| 45-221, gnl|rheMac2|chr9 (7918949-7919165) | |
| 45-221, gnl|rn3|chr17 (79719274-79719491) | |
| 45-221, gnl|tetNig1|chr19 (539509-539334) | |
| 45-221, gnl|xenTro1|scaffold_934 (311116-311295) | |
| 338-528, gnl|bosTau2|chr13 (8353817-8353627) | |
| 338-528, gnl|Hg17|chr10 (7811912-7812102) | |
| 338-528, gnl|Mm7|chr2 (10046001-10045811) | |
| 854-1025, gnl|bosTau2|chr13 (8349463-8349292) | |
| 854-1025, gnl|Hg17|chr10 (7816890-7817061) | |
| 854-1025, gnl|Mm7|chr2 (10042113-10041942) | |
| 1274-1476, gnl|bosTau2|chr13 (8343291-8343089) | |
| 1274-1476, gnl|Hg17|chr10 (7826048-7826250) | |
| 1274-1476, gnl|Mm7|chr2 (10037261-10037059) | |
| 1758-1922, gnl|bosTau2|chr13 (8339494-8339330) | |
| 1758-1922, gnl|Hg17|chr10 (7831153-7831317) | |
| 1758-1922, gnl|Mm7|chr2 (10034062-10033898) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cli (1.22249) | |
| lun (0.902935) | |
| fli (0.608643) | |
| eli (0.303628) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.22249) | |
| lun (0.902935) | |
| fli (0.608643) | |
| eli (0.303628) |