Non-Coding RNA Search

Ss1.1-Liv1-LVRM1G030195.5

Sequence:


               
               TTTATATGCCCACTCTGTTGAGCACGTGGCCTCCAACATGCTGCCGGCGATGGTGGGTCC
AATCATAATGGGTTCCCACTTGTCCTCCATCACCGTGTGGTTTTCGTTGGCCTTCATCAT
CACCATCATCTCCCACTGTGGCTACCACCTACCCTTCCTGCCTTCACCTGAATTCCATGA
CTACCACCATCTCAAGTTCAACCAGTGCTACGGGGTGCTGGGGGTGCTGGACCACCTCCA
TGGGACCGACACCGTGTTCAAGCAGACCAAGGCCTACGAGAGACACACGATCCTGCTGGG
CTTCACCCCGCTCTCTGAGAGCATCCCCGACCCCCCAAAGAAGATGGAGTAAGAGATGGC
CCGAGGGCTGCCCTGGCCGGCCCCTCAGCAGGGAACTGCCAGGTGGCCTGAGGCCTCTGG
GTTGCTCTTCGGCCCACACTCTAACAAGGACACCAAGAGGGCAGGCGAAGGACACCTTCC
TGGAAAGCAGGGCCAAGGATGGGGCCAGGACACTAACTGCCTGCCACCCTCCAAGGGGTC
CAGGGAGGGGTCAGTTTAAGAGGAAAACTTGTAGCTCTGGGAATGGAGGCCAGTCAGAGG
GAAGAAGCCAGGCATCTGAGAGATCCCAGATGACTCCCTGTGGCCTTGGGAAGACACAGG
GAATGACAAAGGTGGCAGGAGGCTGTGGCTGATGCCAGGGTTGGGGAACCAGAAGACACT
GCTTTGCCCCCTCCTCCCCCCCGAGTCCCAAACAACTCTCTCATACTCTACTCAGGCCAG
GGCCAGGACACACTGGCAGTGGTTCTGGGGTCAAGTCCCCTCTGCCCCCGAGTAGACACA
CAGGTAATGTGATCAAGCCCCCATTGTAAATGGAAGCCACCCCCAGGAGTTCCTCCTGGG
ATCCACGCTGAGGTACCAAAGAGGTACAGACAAGCCTGGTACCTTCAGCCACACACGGAA
ACCAAAGGCCCAACCCTGTGGCCCTGCTTCTAGGGGCCCTTCCATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATATGCCCACTCTGTTGAGCACGTGGCCTCCAACATGCTGCCGGCGATGGTGGGTCC
AATCATAATGGGTTCCCACTTGTCCTCCATCACCGTGTGGTTTTCGTTGGCCTTCATCAT
CACCATCATCTCCCACTGTGGCTACCACCTACCCTTCCTGCCTTCACCTGAATTCCATGA
CTACCACCATCTCAAGTTCAACCAGTGCTACGGGGTGCTGGGGGTGCTGGACCACCTCCA
TGGGACCGACACCGTGTTCAAGCAGACCAAGGCCTACGAGAGACACACGATCCTGCTGGG
CTTCACCCCGCTCTCTGAGAGCATCCCCGACCCCCCAAAGAAGATGGAGTAAGAGATGGC
CCGAGGGCTGCCCTGGCCGGCCCCTCAGCAGGGAACTGCCAGGTGGCCTGAGGCCTCTGG
GTTGCTCTTCGGCCCACACTCTAACAAGGACACCAAGAGGGCAGGCGAAGGACACCTTCC
TGGAAAGCAGGGCCAAGGATGGGGCCAGGACACTAACTGCCTGCCACCCTCCAAGGGGTC
CAGGGAGGGGTCAGTTTAAGAGGAAAACTTGTAGCTCTGGGAATGGAGGCCAGTCAGAGG
GAAGAAGCCAGGCATCTGAGAGATCCCAGATGACTCCCTGTGGCCTTGGGAAGACACAGG
GAATGACAAAGGTGGCAGGAGGCTGTGGCTGATGCCAGGGTTGGGGAACCAGAAGACACT
GCTTTGCCCCCTCCTCCCCCCCGAGTCCCAAACAACTCTCTCATACTCTACTCAGGCCAG
GGCCAGGACACACTGGCAGTGGTTCTGGGGTCAAGTCCCCTCTGCCCCCGAGTAGACACA
CAGGTAATGTGATCAAGCCCCCATTGTAAATGGAAGCCACCCCCAGGAGTTCCTCCTGGG
ATCCACGCTGAGGTACCAAAGAGGTACAGACAAGCCTGGTACCTTCAGCCACACACGGAA
ACCAAAGGCCCAACCCTGTGGCCCTGCTTCTAGGGGCCCTTCCATGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29256_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29256_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               313-420, - strand, RNAz p=0.997652
               

               
               455-567, + strand, RNAz p=0.789671

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-420, - strand, RNAz p=0.997652
               

               
               455-567, + strand, RNAz p=0.789671

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032385, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032385, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               193-608, gnl|bosTau2|chr7 (44734561-44734128)
               

               
               193-608, gnl|Hg17|chr5 (154180228-154179804)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-608, gnl|bosTau2|chr7 (44734561-44734128)
               

               
               193-608, gnl|Hg17|chr5 (154180228-154179804)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	313-420, - strand, RNAz p=0.997652
	455-567, + strand, RNAz p=0.789671

	193-608, gnl\|bosTau2\|chr7 (44734561-44734128)
	193-608, gnl\|Hg17\|chr5 (154180228-154179804)