Ss1.1-Liv1-LVRM1G060167.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGGAATTGAAGTATATGGCAGAGAGTTTGCTTATGGTGGCCATCCTTACCCCTTTTC TGGAATATTTGAAATTTCCCCAGGAAATGCTTCTGAACTAGGAGAAACATTTAAATTTAA AGAAGCTGTTGTTTTGGGGAGCACTGACTTCCTAGAAGATGATATAGAAAAAATTGTAGA AGAATTGGGAAAAGAATACAAAGGCAATGCCTATCATTTGATGCATAAAAACTGCAATCA TTTTTCTTCGGCTTTATCAGAGATTCTTTGTGGGAAGGAGATTCCTCGCTGGATCAATCG ACTGGCCTACTTCAGCTCCTGCATACCCTTCCTCCAGAGCTGCCTCCCGAAGGAGTGGCT GACTCCCGCGGCCCTGCAGTCCAGCGTCAGCCAGGAGCTCCAGGACGAACTGGAGGAGGC AGAGGATGCGGCGGCCTCCGCCTCCATGGGCAGCGCTTCAGCAGGCTCCAGGCCTGGGCG CCACACCAAACTCTAAGGGTCTCCAAAGTCACACGCTCAGAACTGGCCCTGGCAGTTGAC TATCCCTAGAGAAAAAGTCAAAGAATAAATGCCCTTTGGATATTTTGTATGCAAAGATGG CTCTCCCCCAAATCCCAGGTTTTCAGCTCAGGATTATATTTGTAATCAAAAAACAAAAAC AATCACTTGGCGCAGGAGGGAGGACTTTGTATGAAACTGCCCTCTGTTTTTTTTACCCAC TTGTACACCTGGATTTCCTCCTTCTGTTTTGTACAAGCTCTGTTAAGTTATGTTTACAGT ATTTCGTATCGCTGTTTACAAATCTCGCATGGACTTCCTGCCACCATGAAAGAAGAAAGC CTTCCCGTCTTCAGCAGCGAGGCCAGGCCTCTCTGTGCACTTCCGACAGCGGCCCCAGCT GCGGCCTGAGCAGTAGGCCCGCGAGGAGGTGCTCACGCACTTAGAGTCACCACCACCTGC CTCACGGTTGTCTTTTAGGCGCGCTGGTCTTCCTTAACACGTTGGCACCAGGGTGCACAG AGGTGAAGGAGCACACGCAGCCCTGAGTCCGTGGTCCGAGTGAGGGTGGCCCCACCCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGGAATTGAAGTATATGGCAGAGAGTTTGCTTATGGTGGCCATCCTTACCCCTTTTC TGGAATATTTGAAATTTCCCCAGGAAATGCTTCTGAACTAGGAGAAACATTTAAATTTAA AGAAGCTGTTGTTTTGGGGAGCACTGACTTCCTAGAAGATGATATAGAAAAAATTGTAGA AGAATTGGGAAAAGAATACAAAGGCAATGCCTATCATTTGATGCATAAAAACTGCAATCA TTTTTCTTCGGCTTTATCAGAGATTCTTTGTGGGAAGGAGATTCCTCGCTGGATCAATCG ACTGGCCTACTTCAGCTCCTGCATACCCTTCCTCCAGAGCTGCCTCCCGAAGGAGTGGCT GACTCCCGCGGCCCTGCAGTCCAGCGTCAGCCAGGAGCTCCAGGACGAACTGGAGGAGGC AGAGGATGCGGCGGCCTCCGCCTCCATGGGCAGCGCTTCAGCAGGCTCCAGGCCTGGGCG CCACACCAAACTCTAAGGGTCTCCAAAGTCACACGCTCAGAACTGGCCCTGGCAGTTGAC TATCCCTAGAGAAAAAGTCAAAGAATAAATGCCCTTTGGATATTTTGTATGCAAAGATGG CTCTCCCCCAAATCCCAGGTTTTCAGCTCAGGATTATATTTGTAATCAAAAAACAAAAAC AATCACTTGGCGCAGGAGGGAGGACTTTGTATGAAACTGCCCTCTGTTTTTTTTACCCAC TTGTACACCTGGATTTCCTCCTTCTGTTTTGTACAAGCTCTGTTAAGTTATGTTTACAGT ATTTCGTATCGCTGTTTACAAATCTCGCATGGACTTCCTGCCACCATGAAAGAAGAAAGC CTTCCCGTCTTCAGCAGCGAGGCCAGGCCTCTCTGTGCACTTCCGACAGCGGCCCCAGCT GCGGCCTGAGCAGTAGGCCCGCGAGGAGGTGCTCACGCACTTAGAGTCACCACCACCTGC CTCACGGTTGTCTTTTAGGCGCGCTGGTCTTCCTTAACACGTTGGCACCAGGGTGCACAG AGGTGAAGGAGCACACGCAGCCCTGAGTCCGTGGTCCGAGTGAGGGTGGCCCCACCCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 300-499, - strand, RNAz p=0.916744 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 300-499, - strand, RNAz p=0.916744 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 25-125, gnl|bosTau2|chr16 (18253994-18254094) | |
| 25-125, gnl|canFam2|chr7 (38691458-38691581) | |
| 25-125, gnl|canFam2|chr7 (38691564-38691466) | |
| 25-125, gnl|danRer3|chrUn (120256580-120256457) | |
| 25-125, gnl|danRer3|chrUn (120256382-120256572) | |
| 25-125, gnl|dasNov1|scaffold_2023 (4913-4814) | |
| 25-125, gnl|dasNov1|scaffold_6169 (82463-82586) | |
| 25-125, gnl|echTel1|scaffold_256015 (2792-2669) | |
| 25-125, gnl|echTel1|scaffold_256015 (2686-2786) | |
| 25-125, gnl|fr1|chrUn (2796466-2796573) | |
| 25-125, gnl|fr1|chrUn (2796643-2796473) | |
| 25-125, gnl|galGal2|chr3 (31011491-31011376) | |
| 25-125, gnl|galGal2|chr3 (31011395-31011484) | |
| 25-125, gnl|hg17|chr1 (241178585-241178708) | |
| 25-125, gnl|Hg17|chr1 (241178590-241178690) | |
| 25-125, gnl|hg17|chr19 (62520530-62520630) | |
| 25-125, gnl|loxAfr1|scaffold_140820 (802-688) | |
| 25-125, gnl|loxAfr1|scaffold_140820 (697-796) | |
| 25-125, gnl|mm7|chr1 (178221364-178221486) | |
| 25-125, gnl|Mm7|chr1 (178221369-178221469) | |
| 25-125, gnl|mm7|chr7 (5966512-5966612) | |
| 25-125, gnl|monDom2|scaffold_13 (38818790-38818668) | |
| 25-125, gnl|monDom2|scaffold_13 (38818701-38818782) | |
| 25-125, gnl|oryCun1|scaffold_213894 (99141-99265) | |
| 25-125, gnl|oryCun1|scaffold_213894 (99247-99149) | |
| 25-125, gnl|panTro1|chr1 (225184429-225184552) | |
| 25-125, gnl|panTro1|chr20 (60253335-60253435) | |
| 25-125, gnl|rheMac2|chr1 (212385323-212385200) | |
| 25-125, gnl|rheMac2|chr1 (212385217-212385315) | |
| 25-125, gnl|rn3|chr13 (94084102-94084225) | |
| 25-125, gnl|rn3|chr13 (94084208-94084110) | |
| 25-125, gnl|tetNig1|chr10 (11349357-11349464) | |
| 25-125, gnl|xenTro1|scaffold_1030 (139246-139124) | |
| 25-125, gnl|xenTro1|scaffold_1030 (139145-139238) | |
| 261-1047, gnl|bosTau2|chr16 (18264436-18265227) | |
| 261-1047, gnl|Hg17|chr1 (241194897-241195690) | |
| 261-1047, gnl|Mm7|chr1 (178227992-178228812) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-125, gnl|bosTau2|chr16 (18253994-18254094) | |
| 25-125, gnl|canFam2|chr7 (38691458-38691581) | |
| 25-125, gnl|canFam2|chr7 (38691564-38691466) | |
| 25-125, gnl|danRer3|chrUn (120256580-120256457) | |
| 25-125, gnl|danRer3|chrUn (120256382-120256572) | |
| 25-125, gnl|dasNov1|scaffold_2023 (4913-4814) | |
| 25-125, gnl|dasNov1|scaffold_6169 (82463-82586) | |
| 25-125, gnl|echTel1|scaffold_256015 (2792-2669) | |
| 25-125, gnl|echTel1|scaffold_256015 (2686-2786) | |
| 25-125, gnl|fr1|chrUn (2796466-2796573) | |
| 25-125, gnl|fr1|chrUn (2796643-2796473) | |
| 25-125, gnl|galGal2|chr3 (31011491-31011376) | |
| 25-125, gnl|galGal2|chr3 (31011395-31011484) | |
| 25-125, gnl|hg17|chr1 (241178585-241178708) | |
| 25-125, gnl|Hg17|chr1 (241178590-241178690) | |
| 25-125, gnl|hg17|chr19 (62520530-62520630) | |
| 25-125, gnl|loxAfr1|scaffold_140820 (802-688) | |
| 25-125, gnl|loxAfr1|scaffold_140820 (697-796) | |
| 25-125, gnl|mm7|chr1 (178221364-178221486) | |
| 25-125, gnl|Mm7|chr1 (178221369-178221469) | |
| 25-125, gnl|mm7|chr7 (5966512-5966612) | |
| 25-125, gnl|monDom2|scaffold_13 (38818790-38818668) | |
| 25-125, gnl|monDom2|scaffold_13 (38818701-38818782) | |
| 25-125, gnl|oryCun1|scaffold_213894 (99141-99265) | |
| 25-125, gnl|oryCun1|scaffold_213894 (99247-99149) | |
| 25-125, gnl|panTro1|chr1 (225184429-225184552) | |
| 25-125, gnl|panTro1|chr20 (60253335-60253435) | |
| 25-125, gnl|rheMac2|chr1 (212385323-212385200) | |
| 25-125, gnl|rheMac2|chr1 (212385217-212385315) | |
| 25-125, gnl|rn3|chr13 (94084102-94084225) | |
| 25-125, gnl|rn3|chr13 (94084208-94084110) | |
| 25-125, gnl|tetNig1|chr10 (11349357-11349464) | |
| 25-125, gnl|xenTro1|scaffold_1030 (139246-139124) | |
| 25-125, gnl|xenTro1|scaffold_1030 (139145-139238) | |
| 261-1047, gnl|bosTau2|chr16 (18264436-18265227) | |
| 261-1047, gnl|Hg17|chr1 (241194897-241195690) | |
| 261-1047, gnl|Mm7|chr1 (178227992-178228812) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cte (0.29274) | |
| tes (0.207814) | |
| nep (0.183925) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| tes (0.207814) | |
| nep (0.183925) | |
| ebs (0.118301) |