Ss1.1-Liv1-LVRM1G060186.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGAAGTTGGTCTTTTTCAAAGCCAACCACAAGGCTCTCTTGTCCCCCGAACGTGGGACA GCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGCCTCCGAGGACAATGAAGGGGCTCAC GTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGCAGGGCTTCGAAATCCCCACCAATGG ACTTTCAGAATTTGCAGAATATGGAGATCTTGCGGAACTGGCCCTGGGCAAATTTCACGT TGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTTCTGGAGAATCTGGAGAAATGATGGA AGGTGTGGATCAAGTCACTCTTTACAGCTATAAAGTTCAGTCTACTATTACGTCTCGAAT GGCCAACACCGTCATCCAGACCAAAGTGGTGAACCACTCCCCGGAGCCTCAGGATGTTGT GTTTGATATTCACATCCCCAAAGGAGCCTTCATCTCCAACTTCTCCATGACTGTGGACGG CACCAAGTTTACCAGTTCCATTAAGGAGAAAACTGTGGGCCGCGCCCTCTACTGGCAGGC GAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGAGCCGAGCTCTCGATATGGAGAACTT CAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGGTGCAGTTTGAACTTCATTACCAGGA AGTGAAGTGGAGGAACCTGGGGTCCTATGAGCACAGGATCCACCTGCAGCCGGGACGACT GGCCAAGCACCTGGAGGTAGATGTGCAGATTATTGAACCTCAGGGATTAAGATTTCTCCA TGTTCTGGACACATTCGACGGGCATTTCGATGGAGTTCCAGTCGTCGTTAAAGGACAGCA GAAGGCACACGTGGCCTTCAAGCCCACAGTGGCACAGCAGAGAAAATGCCCCAGCTGCTC TGAGACGGCCGTGGACGGAGAGCTGGTGGTGATGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGAAGTTGGTCTTTTTCAAAGCCAACCACAAGGCTCTCTTGTCCCCCGAACGTGGGACA GCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGCCTCCGAGGACAATGAAGGGGCTCAC GTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGCAGGGCTTCGAAATCCCCACCAATGG ACTTTCAGAATTTGCAGAATATGGAGATCTTGCGGAACTGGCCCTGGGCAAATTTCACGT TGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTTCTGGAGAATCTGGAGAAATGATGGA AGGTGTGGATCAAGTCACTCTTTACAGCTATAAAGTTCAGTCTACTATTACGTCTCGAAT GGCCAACACCGTCATCCAGACCAAAGTGGTGAACCACTCCCCGGAGCCTCAGGATGTTGT GTTTGATATTCACATCCCCAAAGGAGCCTTCATCTCCAACTTCTCCATGACTGTGGACGG CACCAAGTTTACCAGTTCCATTAAGGAGAAAACTGTGGGCCGCGCCCTCTACTGGCAGGC GAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGAGCCGAGCTCTCGATATGGAGAACTT CAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGGTGCAGTTTGAACTTCATTACCAGGA AGTGAAGTGGAGGAACCTGGGGTCCTATGAGCACAGGATCCACCTGCAGCCGGGACGACT GGCCAAGCACCTGGAGGTAGATGTGCAGATTATTGAACCTCAGGGATTAAGATTTCTCCA TGTTCTGGACACATTCGACGGGCATTTCGATGGAGTTCCAGTCGTCGTTAAAGGACAGCA GAAGGCACACGTGGCCTTCAAGCCCACAGTGGCACAGCAGAGAAAATGCCCCAGCTGCTC TGAGACGGCCGTGGACGGAGAGCTGGTGGTGATGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 572-690, + strand, RNAz p=0.512894 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 572-690, + strand, RNAz p=0.512894 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 68-190, gnl|bosTau2|chr13 (8371009-8370887) | |
| 68-190, gnl|canFam2|chr2 (31248718-31248257) | |
| 68-190, gnl|dasNov1|scaffold_28397 (42484-42013) | |
| 68-190, gnl|echTel1|scaffold_23140 (1168-1629) | |
| 68-190, gnl|galGal2|chr1 (6207157-6206712) | |
| 68-190, gnl|hg17|chr10 (7784995-7785502) | |
| 68-190, gnl|Hg17|chr10 (7785363-7785487) | |
| 68-190, gnl|loxAfr1|scaffold_1138 (140593-140122) | |
| 68-190, gnl|mm7|chr2 (10070113-10069627) | |
| 68-190, gnl|Mm7|chr2 (10069764-10069640) | |
| 68-190, gnl|monDom2|scaffold_30 (4302003-4302451) | |
| 68-190, gnl|panTro1|chr8 (7886015-7886523) | |
| 68-190, gnl|rheMac2|chr9 (7894816-7895318) | |
| 68-190, gnl|rn3|chr17 (79700480-79700958) | |
| 298-469, gnl|bosTau2|chr13 (8364338-8364167) | |
| 298-469, gnl|Hg17|chr10 (7790990-7791161) | |
| 298-469, gnl|Mm7|chr2 (10065479-10065308) | |
| 572-738, gnl|bosTau2|chr13 (8361169-8361003) | |
| 572-738, gnl|canFam2|chr2 (31239719-31239539) | |
| 572-738, gnl|danRer3|chr4 (22942437-22942614) | |
| 572-738, gnl|dasNov1|scaffold_104306 (7766-7586) | |
| 572-738, gnl|echTel1|scaffold_270156 (4099-4279) | |
| 572-738, gnl|fr1|chrUn (134683937-134684120) | |
| 572-738, gnl|galGal2|chr1 (6198914-6198739) | |
| 572-738, gnl|hg17|chr10 (7799587-7799767) | |
| 572-738, gnl|Hg17|chr10 (7799593-7799759) | |
| 572-738, gnl|loxAfr1|scaffold_1138 (129551-129371) | |
| 572-738, gnl|mm7|chr2 (10058797-10058617) | |
| 572-738, gnl|Mm7|chr2 (10058789-10058623) | |
| 572-738, gnl|monDom2|scaffold_30 (4312201-4312381) | |
| 572-738, gnl|oryCun1|scaffold_174740 (10774-10594) | |
| 572-738, gnl|panTro1|chr8 (7900614-7900794) | |
| 572-738, gnl|rheMac2|chr9 (7909242-7909422) | |
| 572-738, gnl|rn3|chr17 (79712146-79712326) | |
| 572-738, gnl|tetNig1|chr19 (540297-540123) | |
| 572-738, gnl|xenTro1|scaffold_934 (307504-307674) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-190, gnl|bosTau2|chr13 (8371009-8370887) | |
| 68-190, gnl|canFam2|chr2 (31248718-31248257) | |
| 68-190, gnl|dasNov1|scaffold_28397 (42484-42013) | |
| 68-190, gnl|echTel1|scaffold_23140 (1168-1629) | |
| 68-190, gnl|galGal2|chr1 (6207157-6206712) | |
| 68-190, gnl|hg17|chr10 (7784995-7785502) | |
| 68-190, gnl|Hg17|chr10 (7785363-7785487) | |
| 68-190, gnl|loxAfr1|scaffold_1138 (140593-140122) | |
| 68-190, gnl|mm7|chr2 (10070113-10069627) | |
| 68-190, gnl|Mm7|chr2 (10069764-10069640) | |
| 68-190, gnl|monDom2|scaffold_30 (4302003-4302451) | |
| 68-190, gnl|panTro1|chr8 (7886015-7886523) | |
| 68-190, gnl|rheMac2|chr9 (7894816-7895318) | |
| 68-190, gnl|rn3|chr17 (79700480-79700958) | |
| 298-469, gnl|bosTau2|chr13 (8364338-8364167) | |
| 298-469, gnl|Hg17|chr10 (7790990-7791161) | |
| 298-469, gnl|Mm7|chr2 (10065479-10065308) | |
| 572-738, gnl|bosTau2|chr13 (8361169-8361003) | |
| 572-738, gnl|canFam2|chr2 (31239719-31239539) | |
| 572-738, gnl|danRer3|chr4 (22942437-22942614) | |
| 572-738, gnl|dasNov1|scaffold_104306 (7766-7586) | |
| 572-738, gnl|echTel1|scaffold_270156 (4099-4279) | |
| 572-738, gnl|fr1|chrUn (134683937-134684120) | |
| 572-738, gnl|galGal2|chr1 (6198914-6198739) | |
| 572-738, gnl|hg17|chr10 (7799587-7799767) | |
| 572-738, gnl|Hg17|chr10 (7799593-7799759) | |
| 572-738, gnl|loxAfr1|scaffold_1138 (129551-129371) | |
| 572-738, gnl|mm7|chr2 (10058797-10058617) | |
| 572-738, gnl|Mm7|chr2 (10058789-10058623) | |
| 572-738, gnl|monDom2|scaffold_30 (4312201-4312381) | |
| 572-738, gnl|oryCun1|scaffold_174740 (10774-10594) | |
| 572-738, gnl|panTro1|chr8 (7900614-7900794) | |
| 572-738, gnl|rheMac2|chr9 (7909242-7909422) | |
| 572-738, gnl|rn3|chr17 (79712146-79712326) | |
| 572-738, gnl|tetNig1|chr19 (540297-540123) | |
| 572-738, gnl|xenTro1|scaffold_934 (307504-307674) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| cli (0.152812) |