Non-Coding RNA Search

Ss1.1-Liv1-LVRM1G110179.5

Sequence:


               
               GTGTGGCTGGCTGAGCTGCAGGGCCCCATCCCCCAGGCGCCACCTCCAGAGCCTGGAACC
CAGGCACCAGCCTACCGGCCTGTCTCCAGGAACATTGACGTCCCAAAGAGGAAGTCGGAT
GCCGTGGAAATGGACGAGATGATGGCGGCCATGGTGCTGACCTCCCTGTCCTGCAGCCCC
GTTGTGCAGAGTCCTCCCGGGGTCGAGGCCAACTTCTCTGCTTCCCGCGCCGCCTGTGAC
CCGTGGAAGGAGAGTGGCGACGTGTCAGACAGCGGCAGTAGCACCACCAGCGGGCACTGG
AGCGGGAGCAGCGGTGTCTCCACCCCCTCCCCTCCCCACCCCCAGGCCAGCCCCAAGTAT
TTGGGGGATGCCTTTGGTTCTCCGCAAACTGATCATGGTTTTGAGACTGATCCAGATGCT
TTCCTGTTGGATGAACCAGCTCCCCGCAAGAGAAAGAACTCGGTGAAGGTGATGTACAAG
TGCCTGTGGCCCAACTGCGGCAAAGTCCTGCGCTCCATCGTGGGCATCAAGCGACACGTC
AAAGCCCTTCACCTGGGGGATACCGTGGACTCCGACCAGTTCAAGCGGGAGGAGGATTTC
TACTACACGGAGGTGCAGATGAAGGAGGAAGCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGGCTGGCTGAGCTGCAGGGCCCCATCCCCCAGGCGCCACCTCCAGAGCCTGGAACC
CAGGCACCAGCCTACCGGCCTGTCTCCAGGAACATTGACGTCCCAAAGAGGAAGTCGGAT
GCCGTGGAAATGGACGAGATGATGGCGGCCATGGTGCTGACCTCCCTGTCCTGCAGCCCC
GTTGTGCAGAGTCCTCCCGGGGTCGAGGCCAACTTCTCTGCTTCCCGCGCCGCCTGTGAC
CCGTGGAAGGAGAGTGGCGACGTGTCAGACAGCGGCAGTAGCACCACCAGCGGGCACTGG
AGCGGGAGCAGCGGTGTCTCCACCCCCTCCCCTCCCCACCCCCAGGCCAGCCCCAAGTAT
TTGGGGGATGCCTTTGGTTCTCCGCAAACTGATCATGGTTTTGAGACTGATCCAGATGCT
TTCCTGTTGGATGAACCAGCTCCCCGCAAGAGAAAGAACTCGGTGAAGGTGATGTACAAG
TGCCTGTGGCCCAACTGCGGCAAAGTCCTGCGCTCCATCGTGGGCATCAAGCGACACGTC
AAAGCCCTTCACCTGGGGGATACCGTGGACTCCGACCAGTTCAAGCGGGAGGAGGATTTC
TACTACACGGAGGTGCAGATGAAGGAGGAAGCTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50745210|ref|XP_420024.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50745210|ref|XP_420024.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               289-392, + strand, RNAz p=0.95667
               

               
               296-456, - strand, RNAz p=0.980699

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-392, + strand, RNAz p=0.95667
               

               
               296-456, - strand, RNAz p=0.980699

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-111, gnl|bosTau2|chr8 (5412648-5412758)
               

               
               1-111, gnl|Hg17|chr8 (28273137-28273027)
               

               
               1-111, gnl|Mm7|chr14 (60246632-60246742)
               


               
               220-456, gnl|bosTau2|chr8 (5421154-5421390)
               

               
               220-456, gnl|canFam2|chr25 (32203657-32203407)
               

               
               220-456, gnl|danRer3|chr12 (4415476-4415685)
               

               
               220-456, gnl|echTel1|scaffold_310049 (40216-40463)
               

               
               220-456, gnl|fr1|chrUn (58364161-58364395)
               

               
               220-456, gnl|galGal2|chr3 (103617190-103616939)
               

               
               220-456, gnl|hg17|chr8 (28266606-28266858)
               

               
               220-456, gnl|Hg17|chr8 (28266845-28266609)
               

               
               220-456, gnl|loxAfr1|scaffold_13621 (48255-48503)
               

               
               220-456, gnl|mm7|chr14 (60251704-60251458)
               

               
               220-456, gnl|Mm7|chr14 (60251469-60251699)
               

               
               220-456, gnl|monDom2|scaffold_1 (68284784-68285038)
               

               
               220-456, gnl|panTro1|chr7 (29253243-29253495)
               

               
               220-456, gnl|rheMac2|chr8 (28502228-28502480)
               

               
               220-456, gnl|rn3|chr15 (44828366-44828120)
               

               
               220-456, gnl|tetNig1|chr9 (5867369-5867588)
               

               
               220-456, gnl|xenTro1|scaffold_508 (420105-420351)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-111, gnl|bosTau2|chr8 (5412648-5412758)
               

               
               1-111, gnl|Hg17|chr8 (28273137-28273027)
               

               
               1-111, gnl|Mm7|chr14 (60246632-60246742)
               


               
               220-456, gnl|bosTau2|chr8 (5421154-5421390)
               

               
               220-456, gnl|canFam2|chr25 (32203657-32203407)
               

               
               220-456, gnl|danRer3|chr12 (4415476-4415685)
               

               
               220-456, gnl|echTel1|scaffold_310049 (40216-40463)
               

               
               220-456, gnl|fr1|chrUn (58364161-58364395)
               

               
               220-456, gnl|galGal2|chr3 (103617190-103616939)
               

               
               220-456, gnl|hg17|chr8 (28266606-28266858)
               

               
               220-456, gnl|Hg17|chr8 (28266845-28266609)
               

               
               220-456, gnl|loxAfr1|scaffold_13621 (48255-48503)
               

               
               220-456, gnl|mm7|chr14 (60251704-60251458)
               

               
               220-456, gnl|Mm7|chr14 (60251469-60251699)
               

               
               220-456, gnl|monDom2|scaffold_1 (68284784-68285038)
               

               
               220-456, gnl|panTro1|chr7 (29253243-29253495)
               

               
               220-456, gnl|rheMac2|chr8 (28502228-28502480)
               

               
               220-456, gnl|rn3|chr15 (44828366-44828120)
               

               
               220-456, gnl|tetNig1|chr9 (5867369-5867588)
               

               
               220-456, gnl|xenTro1|scaffold_508 (420105-420351)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	289-392, + strand, RNAz p=0.95667
	296-456, - strand, RNAz p=0.980699

	1-111, gnl\|bosTau2\|chr8 (5412648-5412758)
	1-111, gnl\|Hg17\|chr8 (28273137-28273027)
	1-111, gnl\|Mm7\|chr14 (60246632-60246742)

	220-456, gnl\|bosTau2\|chr8 (5421154-5421390)
	220-456, gnl\|canFam2\|chr25 (32203657-32203407)
	220-456, gnl\|danRer3\|chr12 (4415476-4415685)
	220-456, gnl\|echTel1\|scaffold_310049 (40216-40463)
	220-456, gnl\|fr1\|chrUn (58364161-58364395)
	220-456, gnl\|galGal2\|chr3 (103617190-103616939)
	220-456, gnl\|hg17\|chr8 (28266606-28266858)
	220-456, gnl\|Hg17\|chr8 (28266845-28266609)
	220-456, gnl\|loxAfr1\|scaffold_13621 (48255-48503)
	220-456, gnl\|mm7\|chr14 (60251704-60251458)
	220-456, gnl\|Mm7\|chr14 (60251469-60251699)
	220-456, gnl\|monDom2\|scaffold_1 (68284784-68285038)
	220-456, gnl\|panTro1\|chr7 (29253243-29253495)
	220-456, gnl\|rheMac2\|chr8 (28502228-28502480)
	220-456, gnl\|rn3\|chr15 (44828366-44828120)
	220-456, gnl\|tetNig1\|chr9 (5867369-5867588)
	220-456, gnl\|xenTro1\|scaffold_508 (420105-420351)