Non-Coding RNA Search

Ss1.1-Liv1-LVRM1H020047.5

Sequence:


               
               GCCGCTCTAGGTTTGGCGGCGGGAGTTCGAGGGACCTGGAGCAACTACACACCCCAAGCT
TTCCTAATGGTTTCAGTTACAAGATCCGTGTTTGGAGACCTCCCCTCGGGGGCAGGGACG
GTGGAAAAGTTCCAGCTGCAATCAGACCAGCTGAGAGTGGACATCATCTCCTGGGGCTGC
ACCATCACGGCCCTGGAGGTCAAAGACAGGCAGGGCAGAGCCTCAGACGTGGTGCTTGGC
TTTGCTGAATTGAAAGAGTACCTCCAAAAACATCCCTACTTTGGAGCAGTGGTTGGCAGA
GTGGCAAACCGAATTGCCAAAGGAACATTCACATTGGATGGGAAGGAGTATAAGCTGGCC
ATCAACAACGGGCCCAACAGCCTGCATGGAGGAGTCAGAGGATTTGATAAGGTCCTCTGG
ACCCCTCGGGTGCTGTCAAATGGCATCGAGTTCTCGAGGGTCAGTCCAGATGGTGAGGAA
GGCTACCCTGGAGAGTTAAAAGTCTGGGTGACATACACGCTGGATGGTGGGGAGCTCGTG
GTCAACTATCGAGCACAGGCCAGTCAGACCACCCCAGTCAATCTGACCAACCACTCTTAT
TTCAACCTGGCGGGCCAGGGTTCCCCAAATATATATGACCATGAAGTCACTATAGAAGCT
GATGCTTTTTTGCCTGTGGATGAAACCCTAATCCCTACAGGAGAAATTGCTCCAGTGCAA
GGAACTGCATTTGATCTGAGGAAGCCAGTGGAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTCTAGGTTTGGCGGCGGGAGTTCGAGGGACCTGGAGCAACTACACACCCCAAGCT
TTCCTAATGGTTTCAGTTACAAGATCCGTGTTTGGAGACCTCCCCTCGGGGGCAGGGACG
GTGGAAAAGTTCCAGCTGCAATCAGACCAGCTGAGAGTGGACATCATCTCCTGGGGCTGC
ACCATCACGGCCCTGGAGGTCAAAGACAGGCAGGGCAGAGCCTCAGACGTGGTGCTTGGC
TTTGCTGAATTGAAAGAGTACCTCCAAAAACATCCCTACTTTGGAGCAGTGGTTGGCAGA
GTGGCAAACCGAATTGCCAAAGGAACATTCACATTGGATGGGAAGGAGTATAAGCTGGCC
ATCAACAACGGGCCCAACAGCCTGCATGGAGGAGTCAGAGGATTTGATAAGGTCCTCTGG
ACCCCTCGGGTGCTGTCAAATGGCATCGAGTTCTCGAGGGTCAGTCCAGATGGTGAGGAA
GGCTACCCTGGAGAGTTAAAAGTCTGGGTGACATACACGCTGGATGGTGGGGAGCTCGTG
GTCAACTATCGAGCACAGGCCAGTCAGACCACCCCAGTCAATCTGACCAACCACTCTTAT
TTCAACCTGGCGGGCCAGGGTTCCCCAAATATATATGACCATGAAGTCACTATAGAAGCT
GATGCTTTTTTGCCTGTGGATGAAACCCTAATCCCTACAGGAGAAATTGCTCCAGTGCAA
GGAACTGCATTTGATCTGAGGAAGCCAGTGGAGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20530221|gb|AAL62475.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20530221|gb|AAL62475.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-196, + strand, RNAz p=0.702371

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-196, + strand, RNAz p=0.702371

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-256, gnl|bosTau2|chr11 (16080387-16080134)
               

               
               1-256, gnl|Hg17|chr2 (38804886-38805144)
               

               
               1-256, gnl|Mm7|chr17 (78423361-78423618)
               


               
               410-619, gnl|bosTau2|chr11 (16063897-16063688)
               

               
               410-619, gnl|canFam2|chr17 (33858361-33858607)
               

               
               410-619, gnl|danRer3|chrNA (157103882-157103647)
               

               
               410-619, gnl|dasNov1|scaffold_11191 (33834-33588)
               

               
               410-619, gnl|echTel1|scaffold_100494 (1151-896)
               

               
               410-619, gnl|galGal2|chrUn (139360477-139360254)
               

               
               410-619, gnl|hg17|chr2 (38820064-38820310)
               

               
               410-619, gnl|Hg17|chr2 (38820071-38820280)
               

               
               410-619, gnl|mm7|chr17 (78440684-78440926)
               

               
               410-619, gnl|Mm7|chr17 (78440691-78440900)
               

               
               410-619, gnl|monDom2|scaffold_23 (41902363-41902610)
               

               
               410-619, gnl|oryCun1|scaffold_132792 (8309-8063)
               

               
               410-619, gnl|panTro1|chr12 (40309282-40309528)
               

               
               410-619, gnl|rheMac2|chr13 (38662593-38662835)
               

               
               410-619, gnl|rn3|chr6 (3041449-3041695)
               

               
               410-619, gnl|tetNig1|chrUn_random (87932923-87932606)
               

               
               410-619, gnl|xenTro1|scaffold_41 (532630-532889)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-256, gnl|bosTau2|chr11 (16080387-16080134)
               

               
               1-256, gnl|Hg17|chr2 (38804886-38805144)
               

               
               1-256, gnl|Mm7|chr17 (78423361-78423618)
               


               
               410-619, gnl|bosTau2|chr11 (16063897-16063688)
               

               
               410-619, gnl|canFam2|chr17 (33858361-33858607)
               

               
               410-619, gnl|danRer3|chrNA (157103882-157103647)
               

               
               410-619, gnl|dasNov1|scaffold_11191 (33834-33588)
               

               
               410-619, gnl|echTel1|scaffold_100494 (1151-896)
               

               
               410-619, gnl|galGal2|chrUn (139360477-139360254)
               

               
               410-619, gnl|hg17|chr2 (38820064-38820310)
               

               
               410-619, gnl|Hg17|chr2 (38820071-38820280)
               

               
               410-619, gnl|mm7|chr17 (78440684-78440926)
               

               
               410-619, gnl|Mm7|chr17 (78440691-78440900)
               

               
               410-619, gnl|monDom2|scaffold_23 (41902363-41902610)
               

               
               410-619, gnl|oryCun1|scaffold_132792 (8309-8063)
               

               
               410-619, gnl|panTro1|chr12 (40309282-40309528)
               

               
               410-619, gnl|rheMac2|chr13 (38662593-38662835)
               

               
               410-619, gnl|rn3|chr6 (3041449-3041695)
               

               
               410-619, gnl|tetNig1|chrUn_random (87932923-87932606)
               

               
               410-619, gnl|xenTro1|scaffold_41 (532630-532889)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cty (0.20816)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	1-256, gnl\|bosTau2\|chr11 (16080387-16080134)
	1-256, gnl\|Hg17\|chr2 (38804886-38805144)
	1-256, gnl\|Mm7\|chr17 (78423361-78423618)

	410-619, gnl\|bosTau2\|chr11 (16063897-16063688)
	410-619, gnl\|canFam2\|chr17 (33858361-33858607)
	410-619, gnl\|danRer3\|chrNA (157103882-157103647)
	410-619, gnl\|dasNov1\|scaffold_11191 (33834-33588)
	410-619, gnl\|echTel1\|scaffold_100494 (1151-896)
	410-619, gnl\|galGal2\|chrUn (139360477-139360254)
	410-619, gnl\|hg17\|chr2 (38820064-38820310)
	410-619, gnl\|Hg17\|chr2 (38820071-38820280)
	410-619, gnl\|mm7\|chr17 (78440684-78440926)
	410-619, gnl\|Mm7\|chr17 (78440691-78440900)
	410-619, gnl\|monDom2\|scaffold_23 (41902363-41902610)
	410-619, gnl\|oryCun1\|scaffold_132792 (8309-8063)
	410-619, gnl\|panTro1\|chr12 (40309282-40309528)
	410-619, gnl\|rheMac2\|chr13 (38662593-38662835)
	410-619, gnl\|rn3\|chr6 (3041449-3041695)
	410-619, gnl\|tetNig1\|chrUn_random (87932923-87932606)
	410-619, gnl\|xenTro1\|scaffold_41 (532630-532889)

	cty (0.20816)
	cst (0.140036)
	ute (0.132784)
	pgl (0.118483)
	med (0.116252)