Non-Coding RNA Search

Ss1.1-Lng1-LNG010001A04.5

Sequence:


               
               AAAATTGTGCACAAAAACAGAGCCCAGATGCTCACAAGGGACCGGGCTTTCGAAAGCACT
TTGAAATCTTGGGAAGATAAGCAGAAGGGTGATTCCTGGTAAACCCATGCTTCGAACCCA
TTTGTACATCCAGCAGGCGGCTGACCTGGCGACGGAAGAGGTGTCTCAGATGCAGCTGTG
CTCGCAGGCTGCAGAGGAGCTCATTACCAGGATTTGTGATGCAGCCACCATCCACTGTCT
TTTGGAACAGGAGCTGGCGCACGCGGTGAATGCCTGTTCCCATGCGCTGAACAAAGCCAA
CCCACGCTTCCCAGAGAGTCTTACGAGAGACACTGCCACTGAAATAGCCATCAATGTGAA
GGCCCTATATAATGAAACAGAATCTTTACTAGTTGGCAGGGTTCCTTTGCAGTTGGAATC
TCCACATGAAGAGCGGGTATCCAACGCCTTACATTCCGTGGAGGTGGAGCTGCAGAAACT
AACAGAGATCCCCTGGCTTTATTACATCTTACACCCAAATGAGGATGAGGAGCCCCCAAT
GGATTGCACCAAGAGAAATAGCAGAAGTACGGTCTTTCGCATTGTGCCCAAATTCAAAAA
GGAAAAGGTTCAGAAGCAGAAGACAAGTTCACAGCCTGGACCTGGGGATACCGAAAGTGG
GTCATGTGAAGCGAATTCTCCAGGGAATTAAAGAGCTTGGGAGGAGCACTCCCCAGTCTG
AGGTGTAATCATATTGGTGCTATTCCTTGGAAGGGAAGTGATTGCGACTCAATACAAAGT
CCTTGGGAGCCACTGGCTGTTCTGGTAGTTTCTGCCCAGAGAAGTAAGCACCACTGAGGC
ACCTCGATGGCTTGATATTTTGATGCAGGTGAACATTTTGATTTGTGGTATCGGAAAATA
TTTTCTTGTGCCAAAAAAATATATTCCACAAAGCCATTTTCTTATTGTGCAAACCTGACA
TGTTCAAATATGCTCATATGAGTAAAAAGGTAACAGGGAGCTGAGACCATTGACTTGGCT
AAAAGGTGGAATTGCAAAATGTTTACTTTCTTTTAACCTGGTCAGATGGAATGTGCTTAC
TGTGCAACCACATGACAGTATGAGACTAAAACTTCTTGGGTTTAATTACTGGAGGCATTG
GCTTCTCTCTTCAAATCATTGGCTAGAAGACTTAAGATGTAAATTAAGTTGTGGTTTGAA
TTGGCATCACCTCAGATTCTTAGCACTCAGTGGTCAGAGAGTTTGGTCAATACCCCTCAA
ATACTATGAATGAATGCACATCTTAATGCACGGTGTTCCTGCCTGAATTGTCTTTTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTGTGCACAAAAACAGAGCCCAGATGCTCACAAGGGACCGGGCTTTCGAAAGCACT
TTGAAATCTTGGGAAGATAAGCAGAAGGGTGATTCCTGGTAAACCCATGCTTCGAACCCA
TTTGTACATCCAGCAGGCGGCTGACCTGGCGACGGAAGAGGTGTCTCAGATGCAGCTGTG
CTCGCAGGCTGCAGAGGAGCTCATTACCAGGATTTGTGATGCAGCCACCATCCACTGTCT
TTTGGAACAGGAGCTGGCGCACGCGGTGAATGCCTGTTCCCATGCGCTGAACAAAGCCAA
CCCACGCTTCCCAGAGAGTCTTACGAGAGACACTGCCACTGAAATAGCCATCAATGTGAA
GGCCCTATATAATGAAACAGAATCTTTACTAGTTGGCAGGGTTCCTTTGCAGTTGGAATC
TCCACATGAAGAGCGGGTATCCAACGCCTTACATTCCGTGGAGGTGGAGCTGCAGAAACT
AACAGAGATCCCCTGGCTTTATTACATCTTACACCCAAATGAGGATGAGGAGCCCCCAAT
GGATTGCACCAAGAGAAATAGCAGAAGTACGGTCTTTCGCATTGTGCCCAAATTCAAAAA
GGAAAAGGTTCAGAAGCAGAAGACAAGTTCACAGCCTGGACCTGGGGATACCGAAAGTGG
GTCATGTGAAGCGAATTCTCCAGGGAATTAAAGAGCTTGGGAGGAGCACTCCCCAGTCTG
AGGTGTAATCATATTGGTGCTATTCCTTGGAAGGGAAGTGATTGCGACTCAATACAAAGT
CCTTGGGAGCCACTGGCTGTTCTGGTAGTTTCTGCCCAGAGAAGTAAGCACCACTGAGGC
ACCTCGATGGCTTGATATTTTGATGCAGGTGAACATTTTGATTTGTGGTATCGGAAAATA
TTTTCTTGTGCCAAAAAAATATATTCCACAAAGCCATTTTCTTATTGTGCAAACCTGACA
TGTTCAAATATGCTCATATGAGTAAAAAGGTAACAGGGAGCTGAGACCATTGACTTGGCT
AAAAGGTGGAATTGCAAAATGTTTACTTTCTTTTAACCTGGTCAGATGGAATGTGCTTAC
TGTGCAACCACATGACAGTATGAGACTAAAACTTCTTGGGTTTAATTACTGGAGGCATTG
GCTTCTCTCTTCAAATCATTGGCTAGAAGACTTAAGATGTAAATTAAGTTGTGGTTTGAA
TTGGCATCACCTCAGATTCTTAGCACTCAGTGGTCAGAGAGTTTGGTCAATACCCCTCAA
ATACTATGAATGAATGCACATCTTAATGCACGGTGTTCCTGCCTGAATTGTCTTTTCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               677-788, + strand, RNAz p=0.681938

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               677-788, + strand, RNAz p=0.681938

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC043292, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC043292, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               45-211, gnl|bosTau2|chr12 (3721225-3721390)
               

               
               45-211, gnl|Hg17|chr13 (41682737-41682902)
               

               
               45-211, gnl|Mm7|chr14 (73266446-73266281)
               


               
               638-1320, gnl|bosTau2|chr12 (3739603-3740282)
               

               
               638-1320, gnl|Hg17|chr13 (41701234-41701915)
               

               
               638-1320, gnl|Mm7|chr14 (73250847-73250155)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-211, gnl|bosTau2|chr12 (3721225-3721390)
               

               
               45-211, gnl|Hg17|chr13 (41682737-41682902)
               

               
               45-211, gnl|Mm7|chr14 (73266446-73266281)
               


               
               638-1320, gnl|bosTau2|chr12 (3739603-3740282)
               

               
               638-1320, gnl|Hg17|chr13 (41701234-41701915)
               

               
               638-1320, gnl|Mm7|chr14 (73250847-73250155)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	45-211, gnl\|bosTau2\|chr12 (3721225-3721390)
	45-211, gnl\|Hg17\|chr13 (41682737-41682902)
	45-211, gnl\|Mm7\|chr14 (73266446-73266281)

	638-1320, gnl\|bosTau2\|chr12 (3739603-3740282)
	638-1320, gnl\|Hg17\|chr13 (41701234-41701915)
	638-1320, gnl\|Mm7\|chr14 (73250847-73250155)