Ss1.1-Lng1-LNG010001D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGAAGAAGGTTCAGAGGAACCTGATCCTCCTGCACCCACAGCTCCTCCTCCTTGTGGA TCAGATACACCTGGGAGAGGACAGCCCCTTGGAGACAGCAGCAAGCTTCTTCCACAATGT GGATTTTCCCTTCGAGGAGACGGTGGTGGATGGGGTCCATGGGGCTTTCATCAGGCAGCG AGATGGTCTCTATAAAATGTACTGGATGGATGACACTGGCTACAGTGAGAAAGGAACATT TTCTTCAGTGACGTACCCTCGGGGCTATCCCTACAACGGGACAAATTATGTGAATGTCAC CATGCACCTCCGAAGTCCCATCACCAGGGCAGCTTACCTCTTCATAGGGCCGTCCGTAGA TGTTCAGAGCTTCAGCATCCACGGAGACGCCCAGCAGCTGGATGTTTTCATAGCCACCAG TGAACATGCCTATGCCGCATACTTGTGGACAGGTGAGACCACTGGACAGTCAGCTTTTGC ACAGGTCATCGCCGACCGTCAGAAAATTCTCTTTGACCGGAGTTCAGCCATCAAGAGCAC CATTGTCCCTGAAGTGAAGGACTATGCTGCTATTGTGGAACAGAACGTGCAGCATTTTAA GCCTGTGTTCCAGCTGCTGGAAAAGCAGATCCTATCTCGAGTCCAGAACACAGCTAGCTT TAGGAAGACAGCTGAGCGTCTGCTTAGATTTTCAGACAAGAGGCAGACTGAGGAGGCCAT CGACAGGATTTTTGCCATCTCGCAGCAGCAGCAGCAAAGCAAGTCTAAGAAGAACCGAAG GGTCAGCAAACGCTACAAATTTGTGGATGCTGTTCCCGATATTTTTGCACAGATTGAAGT CAATGAAAAAAAGATTCGACAGAAAGCCCAGATTTTGGCACAGAAAGAACTGCCCATAGA TGAAGATGAAGAAATGAAAGACCTTTTAGATTTTGCGGATGTAACATATGAGAAACACCA AAATGGTGATGCGCTGAAAGGCCAGTTTGGACAGGCTCGATTGGTGACAACTACTCACAG CAGAGCCCCGGTCCTGTCTGCTTCGTATACCAAGCTGTTCCTGATTCTGAACATTGCTAT TTTCTTCGTCATGTTGGCAATGCAACTGACTTATTTCCAGAGGGCCCAGAGCCTACACGG CCAAAGATGTCTTTATGCAGTCCTTCTCATAGATAGCTGTATTTTATTATGGTTGTACTC TTCTTGTTCCCAATCACAGTGTTAGCACTGAAGCTATAAAGTGCTTGATTGTTTTGTGGT CACAAATCTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGAAGAAGGTTCAGAGGAACCTGATCCTCCTGCACCCACAGCTCCTCCTCCTTGTGGA TCAGATACACCTGGGAGAGGACAGCCCCTTGGAGACAGCAGCAAGCTTCTTCCACAATGT GGATTTTCCCTTCGAGGAGACGGTGGTGGATGGGGTCCATGGGGCTTTCATCAGGCAGCG AGATGGTCTCTATAAAATGTACTGGATGGATGACACTGGCTACAGTGAGAAAGGAACATT TTCTTCAGTGACGTACCCTCGGGGCTATCCCTACAACGGGACAAATTATGTGAATGTCAC CATGCACCTCCGAAGTCCCATCACCAGGGCAGCTTACCTCTTCATAGGGCCGTCCGTAGA TGTTCAGAGCTTCAGCATCCACGGAGACGCCCAGCAGCTGGATGTTTTCATAGCCACCAG TGAACATGCCTATGCCGCATACTTGTGGACAGGTGAGACCACTGGACAGTCAGCTTTTGC ACAGGTCATCGCCGACCGTCAGAAAATTCTCTTTGACCGGAGTTCAGCCATCAAGAGCAC CATTGTCCCTGAAGTGAAGGACTATGCTGCTATTGTGGAACAGAACGTGCAGCATTTTAA GCCTGTGTTCCAGCTGCTGGAAAAGCAGATCCTATCTCGAGTCCAGAACACAGCTAGCTT TAGGAAGACAGCTGAGCGTCTGCTTAGATTTTCAGACAAGAGGCAGACTGAGGAGGCCAT CGACAGGATTTTTGCCATCTCGCAGCAGCAGCAGCAAAGCAAGTCTAAGAAGAACCGAAG GGTCAGCAAACGCTACAAATTTGTGGATGCTGTTCCCGATATTTTTGCACAGATTGAAGT CAATGAAAAAAAGATTCGACAGAAAGCCCAGATTTTGGCACAGAAAGAACTGCCCATAGA TGAAGATGAAGAAATGAAAGACCTTTTAGATTTTGCGGATGTAACATATGAGAAACACCA AAATGGTGATGCGCTGAAAGGCCAGTTTGGACAGGCTCGATTGGTGACAACTACTCACAG CAGAGCCCCGGTCCTGTCTGCTTCGTATACCAAGCTGTTCCTGATTCTGAACATTGCTAT TTTCTTCGTCATGTTGGCAATGCAACTGACTTATTTCCAGAGGGCCCAGAGCCTACACGG CCAAAGATGTCTTTATGCAGTCCTTCTCATAGATAGCTGTATTTTATTATGGTTGTACTC TTCTTGTTCCCAATCACAGTGTTAGCACTGAAGCTATAAAGTGCTTGATTGTTTTGTGGT CACAAATCTATG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 2-120, + strand, RNAz p=0.874294 | |
| 241-360, - strand, RNAz p=0.972387 | |
| 401-640, - strand, RNAz p=0.992411 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-120, + strand, RNAz p=0.874294 | |
| 241-360, - strand, RNAz p=0.972387 | |
| 401-640, - strand, RNAz p=0.992411 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 50-139, + strand, RNAmicro p=0.997904 | |
| 545-609, - strand, RNAmicro p=0.962893 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 50-139, + strand, RNAmicro p=0.997904 | |
| 545-609, - strand, RNAmicro p=0.962893 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 2-1272, gnl|bosTau2|chr9 (16613935-16615208) | |
| 2-1272, gnl|canFam2|chr1 (59915310-59916498) | |
| 2-1272, gnl|canFam2|chr1 (59915310-59916788) | |
| 2-1272, gnl|danRer3|chr20 (271556-270402) | |
| 2-1272, gnl|danRer3|chr20 (271556-270115) | |
| 2-1272, gnl|dasNov1|scaffold_7258 (46141-47323) | |
| 2-1272, gnl|dasNov1|scaffold_795 (123478-124921) | |
| 2-1272, gnl|echTel1|scaffold_310251 (137510-138698) | |
| 2-1272, gnl|echTel1|scaffold_310251 (137510-138987) | |
| 2-1272, gnl|fr1|chrUn (210793512-210792333) | |
| 2-1272, gnl|fr1|chrUn (210793512-210792046) | |
| 2-1272, gnl|galGal2|chr3 (62278058-62276870) | |
| 2-1272, gnl|galGal2|chr3 (62278058-62276580) | |
| 2-1272, gnl|hg17|chr6 (116863618-116864803) | |
| 2-1272, gnl|Hg17|chr6 (116863975-116865250) | |
| 2-1272, gnl|hg17|chr9 (68454872-68456340) | |
| 2-1272, gnl|loxAfr1|scaffold_14257 (45284-46463) | |
| 2-1272, gnl|loxAfr1|scaffold_14257 (45284-46752) | |
| 2-1272, gnl|mm7|chr10 (33934445-33933257) | |
| 2-1272, gnl|mm7|chr10 (33934445-33932970) | |
| 2-1272, gnl|Mm7|chr10 (33934086-33932828) | |
| 2-1272, gnl|monDom2|scaffold_0 (101215479-101214282) | |
| 2-1272, gnl|monDom2|scaffold_0 (101215479-101213992) | |
| 2-1272, gnl|oryCun1|scaffold_136384 (3559-4747) | |
| 2-1272, gnl|oryCun1|scaffold_136384 (3559-5037) | |
| 2-1272, gnl|panTro1|chr11 (52229290-52230758) | |
| 2-1272, gnl|panTro1|chr5 (119256370-119257555) | |
| 2-1272, gnl|rheMac2|chr15 (77397364-77398837) | |
| 2-1272, gnl|rheMac2|chr4 (147498166-147496981) | |
| 2-1272, gnl|rn3|chr20 (37666382-37667570) | |
| 2-1272, gnl|rn3|chr20 (37666382-37667857) | |
| 2-1272, gnl|tetNig1|chrUn_random (112137375-112136196) | |
| 2-1272, gnl|tetNig1|chrUn_random (112137375-112135910) | |
| 2-1272, gnl|xenTro1|scaffold_373 (597123-595938) | |
| 2-1272, gnl|xenTro1|scaffold_373 (597123-595658) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-1272, gnl|bosTau2|chr9 (16613935-16615208) | |
| 2-1272, gnl|canFam2|chr1 (59915310-59916498) | |
| 2-1272, gnl|canFam2|chr1 (59915310-59916788) | |
| 2-1272, gnl|danRer3|chr20 (271556-270402) | |
| 2-1272, gnl|danRer3|chr20 (271556-270115) | |
| 2-1272, gnl|dasNov1|scaffold_7258 (46141-47323) | |
| 2-1272, gnl|dasNov1|scaffold_795 (123478-124921) | |
| 2-1272, gnl|echTel1|scaffold_310251 (137510-138698) | |
| 2-1272, gnl|echTel1|scaffold_310251 (137510-138987) | |
| 2-1272, gnl|fr1|chrUn (210793512-210792333) | |
| 2-1272, gnl|fr1|chrUn (210793512-210792046) | |
| 2-1272, gnl|galGal2|chr3 (62278058-62276870) | |
| 2-1272, gnl|galGal2|chr3 (62278058-62276580) | |
| 2-1272, gnl|hg17|chr6 (116863618-116864803) | |
| 2-1272, gnl|Hg17|chr6 (116863975-116865250) | |
| 2-1272, gnl|hg17|chr9 (68454872-68456340) | |
| 2-1272, gnl|loxAfr1|scaffold_14257 (45284-46463) | |
| 2-1272, gnl|loxAfr1|scaffold_14257 (45284-46752) | |
| 2-1272, gnl|mm7|chr10 (33934445-33933257) | |
| 2-1272, gnl|mm7|chr10 (33934445-33932970) | |
| 2-1272, gnl|Mm7|chr10 (33934086-33932828) | |
| 2-1272, gnl|monDom2|scaffold_0 (101215479-101214282) | |
| 2-1272, gnl|monDom2|scaffold_0 (101215479-101213992) | |
| 2-1272, gnl|oryCun1|scaffold_136384 (3559-4747) | |
| 2-1272, gnl|oryCun1|scaffold_136384 (3559-5037) | |
| 2-1272, gnl|panTro1|chr11 (52229290-52230758) | |
| 2-1272, gnl|panTro1|chr5 (119256370-119257555) | |
| 2-1272, gnl|rheMac2|chr15 (77397364-77398837) | |
| 2-1272, gnl|rheMac2|chr4 (147498166-147496981) | |
| 2-1272, gnl|rn3|chr20 (37666382-37667570) | |
| 2-1272, gnl|rn3|chr20 (37666382-37667857) | |
| 2-1272, gnl|tetNig1|chrUn_random (112137375-112136196) | |
| 2-1272, gnl|tetNig1|chrUn_random (112137375-112135910) | |
| 2-1272, gnl|xenTro1|scaffold_373 (597123-595938) | |
| 2-1272, gnl|xenTro1|scaffold_373 (597123-595658) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fat (0.294855) | |
| tes (0.207814) | |
| aor (0.195274) | |
| gul (0.177588) | |
| cut (0.169924) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ute (0.132784) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.294855) | |
| tes (0.207814) | |
| aor (0.195274) | |
| gul (0.177588) | |
| cut (0.169924) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ute (0.132784) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eje (0.0988338) |