Ss1.1-Lng1-LNG010001F04.5.5
|
ATGTTGTGTTCCAGCTTGTGTGCTGGATCAGATACGTATGTATATTTCATTGTGCAAAGG
ATTGAAATCGGTTTATAAGAAGACTTACAGTGAAGCAGAAAGCATTGCTGATAAAGTAGA
CCAGGGAAAGCAAATTTCCAAGGGCAGGTCAAGACTGAGAGGAATGTGAGCACATATATG
TTCTTCAGAGTCACTGGGACACAGATGTACTACTGTGCGTAGTTGCTCTGTGCTTGCGGC
CCTCTTCTGGAGGGTTCTCGCGTGCTGTAGGTGTGGGAGAGACATGTATATGACACTGAG
ATGGAGGAAGAACGCTTTCAGAGTTGGAAGAGGTCGTTCAGAGCCTTGGGGCCTGGGGCT
GGGTGGTGGGCTGGGTGGTGGGCAGTGCGCAGAGGCCTCCTGCAGGCGGGAATCCTTGGG
GCAAGGACAGTGTTCCCAGACTTTGCAGCTGCTGTTCCGCAGTCCACTCAGGGCTCCACT
CTCCCGTCCGTCCACGTGGAAGTTTTGTTTTGAAAAAGCCCTTGGTTACCACTTCTGTTT
CTGTCCTAGTTCAAGACGCAGCCAAATGGAAGTAGAGTTTAGACGGTCACCTTTTTTCCC
CAAATATTGTCATTGGCATTTGGCTCGTGTTTGATCATTTCGTCGCTGTCATCTACAGTG
TTAATAGAAACAGTTGAAGGAGTGTAATCATGTGAAGGATTTTATATCCAGATCTCTTAG
TAGATGCCATTTTCTTAAATCCAAGGCAAAATGTAAACTTTATTATTCTAATCTTTTTTT
TTTTTTTCCTTGAGCAACTGCTCCTAGTGCACTCATTGGGGCATTGGT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------TAAAAACAAAGCACACAGGCAGAAGGCCATGACTGA
TGAAAAAGCAATTTGGGAAACCACAGAGAAACATTTGTTGTAATAAAGTAGCTCCCTGAT
TGCAACTGTGTGGAAATAATGTTTTAAATGAAAAGGGAAAGCCTGGCTAATAGCTTCCAA
GACTTAGCTTGGGGTGAAATACTGTTGAGACCTGTGAGCTGTGCTTTTGGGCTTTTTATC
CCCATGTGTGGCTCATCCTCAAAGAGTGATTTCTTGTTGGTTGGGGAATGTTTTGCGTGG
TTGTGGCAGGAGAGTCACACGTAATATGCCCCGTTTGGGTACTGCCTAGGCTCTTGATGG
ACACTGAACAGGGAGAGAAGTGGAAGGGAAGGTTGTTGGGCTTTTGCGGTGATCTCAGGC
TGATTTTCTCAATTTTACCTACAGCCTCCTTGGTACTAGATAGATGTTCAAAGATTCAAA
GCAAAGACTTGATTTCTTTCCTCAAAATCTATGTCGCAGCCCCTTGTCTTTTTCCACGTT
GAAACGCAGATATTCTCTTGATAGGCCTAATATCATGAATTAGCTACATCATCAGACCTC
TGCCCTGATAACTGGAGCAATGAGATTTGTACGGGGAGGAGATGGGGCAGCAAAGAGTGG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGTTGTGTTCCAGCTTGTGTGCTGGATCAGATACGTATGTATATTTCATTGTGCAAAGG
ATTGAAATCGGTTTATAAGAAGACTTACAGTGAAGCAGAAAGCATTGCTGATAAAGTAGA
CCAGGGAAAGCAAATTTCCAAGGGCAGGTCAAGACTGAGAGGAATGTGAGCACATATATG
TTCTTCAGAGTCACTGGGACACAGATGTACTACTGTGCGTAGTTGCTCTGTGCTTGCGGC
CCTCTTCTGGAGGGTTCTCGCGTGCTGTAGGTGTGGGAGAGACATGTATATGACACTGAG
ATGGAGGAAGAACGCTTTCAGAGTTGGAAGAGGTCGTTCAGAGCCTTGGGGCCTGGGGCT
GGGTGGTGGGCTGGGTGGTGGGCAGTGCGCAGAGGCCTCCTGCAGGCGGGAATCCTTGGG
GCAAGGACAGTGTTCCCAGACTTTGCAGCTGCTGTTCCGCAGTCCACTCAGGGCTCCACT
CTCCCGTCCGTCCACGTGGAAGTTTTGTTTTGAAAAAGCCCTTGGTTACCACTTCTGTTT
CTGTCCTAGTTCAAGACGCAGCCAAATGGAAGTAGAGTTTAGACGGTCACCTTTTTTCCC
CAAATATTGTCATTGGCATTTGGCTCGTGTTTGATCATTTCGTCGCTGTCATCTACAGTG
TTAATAGAAACAGTTGAAGGAGTGTAATCATGTGAAGGATTTTATATCCAGATCTCTTAG
TAGATGCCATTTTCTTAAATCCAAGGCAAAATGTAAACTTTATTATTCTAATCTTTTTTT
TTTTTTTCCTTGAGCAACTGCTCCTAGTGCACTCATTGGGGCATTGGT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------TAAAAACAAAGCACACAGGCAGAAGGCCATGACTGA
TGAAAAAGCAATTTGGGAAACCACAGAGAAACATTTGTTGTAATAAAGTAGCTCCCTGAT
TGCAACTGTGTGGAAATAATGTTTTAAATGAAAAGGGAAAGCCTGGCTAATAGCTTCCAA
GACTTAGCTTGGGGTGAAATACTGTTGAGACCTGTGAGCTGTGCTTTTGGGCTTTTTATC
CCCATGTGTGGCTCATCCTCAAAGAGTGATTTCTTGTTGGTTGGGGAATGTTTTGCGTGG
TTGTGGCAGGAGAGTCACACGTAATATGCCCCGTTTGGGTACTGCCTAGGCTCTTGATGG
ACACTGAACAGGGAGAGAAGTGGAAGGGAAGGTTGTTGGGCTTTTGCGGTGATCTCAGGC
TGATTTTCTCAATTTTACCTACAGCCTCCTTGGTACTAGATAGATGTTCAAAGATTCAAA
GCAAAGACTTGATTTCTTTCCTCAAAATCTATGTCGCAGCCCCTTGTCTTTTTCCACGTT
GAAACGCAGATATTCTCTTGATAGGCCTAATATCATGAATTAGCTACATCATCAGACCTC
TGCCCTGATAACTGGAGCAATGAGATTTGTACGGGGAGGAGATGGGGCAGCAAAGAGTGG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
154-245, BP462929 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP462929.1|), blast E-value=9.94922e-44, identity=100% |
|
154-245, BW963080 full-length enriched swine cDNA library, adult liver Sus
(dbj|BW963080.1|), blast E-value=9.94922e-44, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
154-245, BP462929 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP462929.1|), blast E-value=9.94922e-44, identity=100% |
|
154-245, BW963080 full-length enriched swine cDNA library, adult liver Sus
(dbj|BW963080.1|), blast E-value=9.94922e-44, identity=100% |
|
39-827, gnl|bosTau2|chr17 (14732128-14731356) |
|
39-827, gnl|Hg17|chr4 (146802153-146803130) |
| |
|
830-1464, gnl|bosTau2|chr17 (14730956-14730318) |
|
830-1464, gnl|canFam2|chr15 (47145675-47146667) |
|
830-1464, gnl|dasNov1|scaffold_83551 (11644-12594) |
|
830-1464, gnl|hg17|chr4 (146803423-146804383) |
|
830-1464, gnl|Hg17|chr4 (146803536-146804144) |
|
830-1464, gnl|oryCun1|scaffold_208540 (4868-5808) |
|
830-1464, gnl|panTro1|chr3 (164054669-164055662) |
|
830-1464, gnl|rheMac2|chr5 (137702655-137703610) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
39-827, gnl|bosTau2|chr17 (14732128-14731356) |
|
39-827, gnl|Hg17|chr4 (146802153-146803130) |
| |
|
830-1464, gnl|bosTau2|chr17 (14730956-14730318) |
|
830-1464, gnl|canFam2|chr15 (47145675-47146667) |
|
830-1464, gnl|dasNov1|scaffold_83551 (11644-12594) |
|
830-1464, gnl|hg17|chr4 (146803423-146804383) |
|
830-1464, gnl|Hg17|chr4 (146803536-146804144) |
|
830-1464, gnl|oryCun1|scaffold_208540 (4868-5808) |
|
830-1464, gnl|panTro1|chr3 (164054669-164055662) |
|
830-1464, gnl|rheMac2|chr5 (137702655-137703610) |
