Non-Coding RNA Search

Ss1.1-Lng1-LNG010001G02.5

Sequence:


               
               TCCTTTACCCGCCCCCCCGCAACGCACACACCAACCAAGACTTATTTGGTTAAAACACCA
GAGGGCCATGGTCCTCCATGGGGGGCTGGTCCTGGGACTCCACATCTTGATGACCCTCCT
GAGTCCCCAGAAAGCTGGGGCCATCAAGGCTGACCACATGGGCTCCTATGGACCAGCCTT
CTACCAGTCCTATGACGGCTCGGGTCAGTTCACCTACGATTTCGATGGGGAGCAGCTCTT
CTCCGTGGACCTGAAGAAGAGGGAGGCTGTGTGGCGTCTGCCTGAATTCAGCAACTTCGC
CGACTTTGACCCGCAGAATGGGCTGAGAGGCATTGCACTGATCAGAGCCCATCTGGATGT
CTTGGTGGAGCGCTCCAACCATACCAGAGCCACCAATGTGCCTCCAAGGGTGACCGTCCT
CCCCAAGTCCCCTGTGGCGCTGGGCCAGCCCAACGTCCTCATCTGCATCGTGGACAACAT
CTTCCCCCCTGTCATCAATATCACTTGGCTGCACAACGGCCAGACGGTCACCGAGGGGGT
GACCCAGACCAGCTTCTATGCCCAGCCCGACCACTCGTTCCGGAAGTTCCACTACCTGAC
CTTCGTGCCCTCGGCAGGCGACTTCTATGACTGCAAAGTGGAGCACTGGGGCCTGGACGA
GCCGCTCTTTACGCACTGGGAGCCCCAGGTGACTATGCCGCTGCCAGACACCACAGAGAC
CCTGGTCTGTGCCCTCGGCCTGGCGCTTGGCCTGGTGGGCTTCCTCGTGGGTGTCACCCT
TATCATCACAGGCAGACGCCGGTCCAGCTCCCCCAGGTAATGATCCTTCTGAGAGGCTGG
GATGTGAGAGAGACCCTCCGCCCCAGCTTCCTCGCAAGTTTCTGACAGCCCAGAATACTT
GGCTCCACCATCCACCAAGTGCATCCCGGCAGAGCTGCCTTTCAGTGGCATCAACCTGTA
GCCTAGACGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTTACCCGCCCCCCCGCAACGCACACACCAACCAAGACTTATTTGGTTAAAACACCA
GAGGGCCATGGTCCTCCATGGGGGGCTGGTCCTGGGACTCCACATCTTGATGACCCTCCT
GAGTCCCCAGAAAGCTGGGGCCATCAAGGCTGACCACATGGGCTCCTATGGACCAGCCTT
CTACCAGTCCTATGACGGCTCGGGTCAGTTCACCTACGATTTCGATGGGGAGCAGCTCTT
CTCCGTGGACCTGAAGAAGAGGGAGGCTGTGTGGCGTCTGCCTGAATTCAGCAACTTCGC
CGACTTTGACCCGCAGAATGGGCTGAGAGGCATTGCACTGATCAGAGCCCATCTGGATGT
CTTGGTGGAGCGCTCCAACCATACCAGAGCCACCAATGTGCCTCCAAGGGTGACCGTCCT
CCCCAAGTCCCCTGTGGCGCTGGGCCAGCCCAACGTCCTCATCTGCATCGTGGACAACAT
CTTCCCCCCTGTCATCAATATCACTTGGCTGCACAACGGCCAGACGGTCACCGAGGGGGT
GACCCAGACCAGCTTCTATGCCCAGCCCGACCACTCGTTCCGGAAGTTCCACTACCTGAC
CTTCGTGCCCTCGGCAGGCGACTTCTATGACTGCAAAGTGGAGCACTGGGGCCTGGACGA
GCCGCTCTTTACGCACTGGGAGCCCCAGGTGACTATGCCGCTGCCAGACACCACAGAGAC
CCTGGTCTGTGCCCTCGGCCTGGCGCTTGGCCTGGTGGGCTTCCTCGTGGGTGTCACCCT
TATCATCACAGGCAGACGCCGGTCCAGCTCCCCCAGGTAATGATCCTTCTGAGAGGCTGG
GATGTGAGAGAGACCCTCCGCCCCAGCTTCCTCGCAAGTTTCTGACAGCCCAGAATACTT
GGCTCCACCATCCACCAAGTGCATCCCGGCAGAGCTGCCTTTCAGTGGCATCAACCTGTA
GCCTAGACGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               O97981_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               O97981_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               141-396, gnl|bosTau2|chr23 (5625953-5626208)
               

               
               141-396, gnl|Hg17|chr6 (33084025-33083770)
               

               
               141-396, gnl|Mm7|chr17 (32173680-32173935)
               


               
               398-680, gnl|bosTau2|chr23 (5626619-5626901)
               

               
               398-680, gnl|Hg17|chr6 (33083348-33083066)
               

               
               398-680, gnl|Mm7|chr17 (32174163-32174445)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-396, gnl|bosTau2|chr23 (5625953-5626208)
               

               
               141-396, gnl|Hg17|chr6 (33084025-33083770)
               

               
               141-396, gnl|Mm7|chr17 (32173680-32173935)
               


               
               398-680, gnl|bosTau2|chr23 (5626619-5626901)
               

               
               398-680, gnl|Hg17|chr6 (33083348-33083066)
               

               
               398-680, gnl|Mm7|chr17 (32174163-32174445)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	141-396, gnl\|bosTau2\|chr23 (5625953-5626208)
	141-396, gnl\|Hg17\|chr6 (33084025-33083770)
	141-396, gnl\|Mm7\|chr17 (32173680-32173935)

	398-680, gnl\|bosTau2\|chr23 (5626619-5626901)
	398-680, gnl\|Hg17\|chr6 (33083348-33083066)
	398-680, gnl\|Mm7\|chr17 (32174163-32174445)

	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	clu (0.119646)
	cty (0.10408)