Non-Coding RNA Search

Ss1.1-Lng1-LNG010001G04.5

Sequence:


               
               TCACTGCTCCTGTCAGCTTGTAGATAACATGTGGCTCTTAATAATTCTGCTCCTTTGCGT
TCCAACTGGTGGGCAAATGGACCAGGCAAAGGCAGTGATCACCTTGCAGCCTCCGTGGGT
CAGTGTGTTCCAAGAAGAAAACGTAACTTTACAATGTGAGGGACCCCATCTGCCTGGGGA
CAGCTCTACACAGTGGTTTCTCAATGGCACAGCCATTGAGACCTTGACCCCCAGATACAG
AATTGCTGCTGCTGGTATCAATGACAGTGGTGAATACAGGTGCCAGACAGGTCTCTCAGT
GCCAAGTGACCCTGTACAGCTGGAAGTCCACAAGGATTGGCTACTACTCCAGGTCTCGAG
CAGAGTCTTTACTGAAGGGGAACCTCTGGCCTTGAGGTGTCATGGATGGAGGAATAAACT
GATGTACAACATCCTTTTCTACCAAAATGGCAAAACCTTTAAGTTTTCTCCTCGGAATTC
TGAATTCACCATTCTGAAAACCAACTTGAGTCACAATGGCATCTATCATTGCTCAGGCAT
GAGAGTGCATCGATACACATCTGCAGGAGTATCTATCACTATAAAAGAGGGGAACCTGGT
CAACTTGAGCTGTGAAACAAAGTTGCTCCCACAGAGGCCTGGCTTGCAGCTTTACTTCTC
CTTCTTCATGGGAAGCAAGACCCTGATGAGCAGGAACACGTCCTCTAGCTACCAGATGCT
AACTGCTAAAAAAGAAGACTCTGGGTTATACTGGTGTGAGGCGGCCACAGAAGATGGAAA
GGTCATCAAGCGCAGCACTGAGTTGGAGCTTCAGGTGCTTGGCCCCCAGCCACCAACTCC
TGTCTGGTTTCATGTCGTTTTCTATCTGGCAGTAGGGTCTGTATTTTTGATGGATACTGT
TTTCTATGTGATAATACAGAAGCAACTACAAAGAAAGAAAAAGTGGGATTTGGAAATCTC
TTTGGACTCTGGTCACGGGAAGAAGGTAACTTCCTACCTTCCAAAGATAAATATTTAGAA
GAAGAGCTGAAATGTCAGGAACAAGAAGAAGAGCTGCAAGAAAGGACACACTAAGGAGAA
GCCCCAAGGGGGGGCAGCAGCAGCGGCTCTGTGGGTGCCTGTAGATCTCGACAGTCCCCG
CCCCTCTTCTCTGTGGAAGAGTGGGGCGCCAGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTGCTCCTGTCAGCTTGTAGATAACATGTGGCTCTTAATAATTCTGCTCCTTTGCGT
TCCAACTGGTGGGCAAATGGACCAGGCAAAGGCAGTGATCACCTTGCAGCCTCCGTGGGT
CAGTGTGTTCCAAGAAGAAAACGTAACTTTACAATGTGAGGGACCCCATCTGCCTGGGGA
CAGCTCTACACAGTGGTTTCTCAATGGCACAGCCATTGAGACCTTGACCCCCAGATACAG
AATTGCTGCTGCTGGTATCAATGACAGTGGTGAATACAGGTGCCAGACAGGTCTCTCAGT
GCCAAGTGACCCTGTACAGCTGGAAGTCCACAAGGATTGGCTACTACTCCAGGTCTCGAG
CAGAGTCTTTACTGAAGGGGAACCTCTGGCCTTGAGGTGTCATGGATGGAGGAATAAACT
GATGTACAACATCCTTTTCTACCAAAATGGCAAAACCTTTAAGTTTTCTCCTCGGAATTC
TGAATTCACCATTCTGAAAACCAACTTGAGTCACAATGGCATCTATCATTGCTCAGGCAT
GAGAGTGCATCGATACACATCTGCAGGAGTATCTATCACTATAAAAGAGGGGAACCTGGT
CAACTTGAGCTGTGAAACAAAGTTGCTCCCACAGAGGCCTGGCTTGCAGCTTTACTTCTC
CTTCTTCATGGGAAGCAAGACCCTGATGAGCAGGAACACGTCCTCTAGCTACCAGATGCT
AACTGCTAAAAAAGAAGACTCTGGGTTATACTGGTGTGAGGCGGCCACAGAAGATGGAAA
GGTCATCAAGCGCAGCACTGAGTTGGAGCTTCAGGTGCTTGGCCCCCAGCCACCAACTCC
TGTCTGGTTTCATGTCGTTTTCTATCTGGCAGTAGGGTCTGTATTTTTGATGGATACTGT
TTTCTATGTGATAATACAGAAGCAACTACAAAGAAAGAAAAAGTGGGATTTGGAAATCTC
TTTGGACTCTGGTCACGGGAAGAAGGTAACTTCCTACCTTCCAAAGATAAATATTTAGAA
GAAGAGCTGAAATGTCAGGAACAAGAAGAAGAGCTGCAAGAAAGGACACACTAAGGAGAA
GCCCCAAGGGGGGGCAGCAGCAGCGGCTCTGTGGGTGCCTGTAGATCTCGACAGTCCCCG
CCCCTCTTCTCTGTGGAAGAGTGGGGCGCCAGTGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55742701|ref|NP_001002976.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55742701|ref|NP_001002976.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               80-332, gnl|bosTau2|chr3 (17675908-17675656)
               

               
               80-332, gnl|Hg17|chr1 (146568631-146568883)
               

               
               80-332, gnl|Mm7|chr3 (96166458-96166206)
               


               
               335-587, gnl|bosTau2|chr3 (17671884-17671632)
               

               
               335-587, gnl|Hg17|chr1 (146572994-146573246)
               

               
               335-587, gnl|Mm7|chr3 (96161183-96160934)
               


               
               821-1167, gnl|bosTau2|chr3 (17668756-17668405)
               

               
               821-1167, gnl|Hg17|chr1 (146575865-146576214)
               

               
               821-1167, gnl|Mm7|chr3 (96158570-96158245)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-332, gnl|bosTau2|chr3 (17675908-17675656)
               

               
               80-332, gnl|Hg17|chr1 (146568631-146568883)
               

               
               80-332, gnl|Mm7|chr3 (96166458-96166206)
               


               
               335-587, gnl|bosTau2|chr3 (17671884-17671632)
               

               
               335-587, gnl|Hg17|chr1 (146572994-146573246)
               

               
               335-587, gnl|Mm7|chr3 (96161183-96160934)
               


               
               821-1167, gnl|bosTau2|chr3 (17668756-17668405)
               

               
               821-1167, gnl|Hg17|chr1 (146575865-146576214)
               

               
               821-1167, gnl|Mm7|chr3 (96158570-96158245)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               ctl (0.153069)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ctl (0.153069)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)

	80-332, gnl\|bosTau2\|chr3 (17675908-17675656)
	80-332, gnl\|Hg17\|chr1 (146568631-146568883)
	80-332, gnl\|Mm7\|chr3 (96166458-96166206)

	335-587, gnl\|bosTau2\|chr3 (17671884-17671632)
	335-587, gnl\|Hg17\|chr1 (146572994-146573246)
	335-587, gnl\|Mm7\|chr3 (96161183-96160934)

	821-1167, gnl\|bosTau2\|chr3 (17668756-17668405)
	821-1167, gnl\|Hg17\|chr1 (146575865-146576214)
	821-1167, gnl\|Mm7\|chr3 (96158570-96158245)

	tes (0.207814)
	ctl (0.153069)
	hyp (0.142837)
	pty (0.142714)
	che (0.136314)
	pla (0.133672)