Ss1.1-Lng1-LNG010001H01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCTCTGCATCTGGGGACGCTCGCAGCGCTCGGCGCCTGGCCCAGTTTCTTTGACAATG TCTACCGTTCATGAAATTCTGTGCAAGCTCAGCTTGGAGGGGGATCACTCCACACCCGCA AGTGCATATGGGTCCGTCAAAGCATACACCAACTTTGATGCTGAGCGAGATGCTCTGAAC ATTGAGACGGCCATCAAGACCAAAGGTGTGGACGAGGTCACCATCGTCAACATTTTGACC AACCGCAGCAATGAACAGAGACAGGACATTGCCTTTGCCTACCAAAGAAGGACCAAAAAG GAACTTGCATCAGCGCTGAAGTCAGCCTTGTCCGGCCACCTGGAGACAGTGATTTTGGGC CTATTGAAAACACCTGCTCAGTATGACGCTTCCGAGCTGAAAGCCTCCATGAAGGGCCTG GGGACTGACGAGGACTCCCTCATTGAGATCATCTGCTCAAGGACCAACCAGGAGCTGCAG GAAATTAACAGAGTCTACAAGGAGATGTACAAGACTGATCTGGAAAAGGACATCATTTCC GACACATCTGGCGACTTCCGCAAGCTGATGGTTGCCCTGGCCAAGGGTAGAAGAGCAGAG GACGGCTCTGTCATTGATTATGAACTAATTGACCAAGATGCCCGGGATCTCTATGATGCC GGCGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCAGTATCATGACTGAGCGGAGT GTGTGTCACCTCCAGAAAGTATTTGAAAGGTACAAGAGCTACAGCCCCTATGACATGCTG GAGAGCATCAAGAAGGAGGTCAAAGGAGACCTGGAAAATGCTTTCCTGAACCTGGTCCAG TGCATTCAGAACAAGCCACTGTATTTTGCTGACAGACTGTACGACTCCATGAAGGGCAAG GGCACGCGTGATAAGGTCCTGATTAGGATCATGGTCTCCCGCAGTGAAGTGGACATGTTG AAAATTAGATCTGAATTCAAGAGGAAGTACGGCAAGTCCCTGTACAACTACATCCAGCAA GACACCAAGGGCGACTACCAGAAAGCGCTGCTGTACCTGTGTGGTGGGGATGACTGAAGC CTGCGACAGCACTCACGTCCAGGTTGGGCGCTCCTGTGTCCCCAGCGAACAGTTACACGA TCAGCTTGCGACTAACTGCACCCCATGCCTATCCCTGGAGGACGGCCTTAGTGTCACCCG CCCCTCCCACGCCATCCTTGTCTAGTTGCCTGGCTTTCTCCTCTAGTCTCTACTTTTAGC CAAAGAAATGAACACTCCCAGGAGCTGGAAGTGAAATCTATGATGTGAAACACTTTGCCT CTTGTGTATTGTGTCATAAACAGATGAATAAACTGAATTTTTACTTTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCTCTGCATCTGGGGACGCTCGCAGCGCTCGGCGCCTGGCCCAGTTTCTTTGACAATG TCTACCGTTCATGAAATTCTGTGCAAGCTCAGCTTGGAGGGGGATCACTCCACACCCGCA AGTGCATATGGGTCCGTCAAAGCATACACCAACTTTGATGCTGAGCGAGATGCTCTGAAC ATTGAGACGGCCATCAAGACCAAAGGTGTGGACGAGGTCACCATCGTCAACATTTTGACC AACCGCAGCAATGAACAGAGACAGGACATTGCCTTTGCCTACCAAAGAAGGACCAAAAAG GAACTTGCATCAGCGCTGAAGTCAGCCTTGTCCGGCCACCTGGAGACAGTGATTTTGGGC CTATTGAAAACACCTGCTCAGTATGACGCTTCCGAGCTGAAAGCCTCCATGAAGGGCCTG GGGACTGACGAGGACTCCCTCATTGAGATCATCTGCTCAAGGACCAACCAGGAGCTGCAG GAAATTAACAGAGTCTACAAGGAGATGTACAAGACTGATCTGGAAAAGGACATCATTTCC GACACATCTGGCGACTTCCGCAAGCTGATGGTTGCCCTGGCCAAGGGTAGAAGAGCAGAG GACGGCTCTGTCATTGATTATGAACTAATTGACCAAGATGCCCGGGATCTCTATGATGCC GGCGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCAGTATCATGACTGAGCGGAGT GTGTGTCACCTCCAGAAAGTATTTGAAAGGTACAAGAGCTACAGCCCCTATGACATGCTG GAGAGCATCAAGAAGGAGGTCAAAGGAGACCTGGAAAATGCTTTCCTGAACCTGGTCCAG TGCATTCAGAACAAGCCACTGTATTTTGCTGACAGACTGTACGACTCCATGAAGGGCAAG GGCACGCGTGATAAGGTCCTGATTAGGATCATGGTCTCCCGCAGTGAAGTGGACATGTTG AAAATTAGATCTGAATTCAAGAGGAAGTACGGCAAGTCCCTGTACAACTACATCCAGCAA GACACCAAGGGCGACTACCAGAAAGCGCTGCTGTACCTGTGTGGTGGGGATGACTGAAGC CTGCGACAGCACTCACGTCCAGGTTGGGCGCTCCTGTGTCCCCAGCGAACAGTTACACGA TCAGCTTGCGACTAACTGCACCCCATGCCTATCCCTGGAGGACGGCCTTAGTGTCACCCG CCCCTCCCACGCCATCCTTGTCTAGTTGCCTGGCTTTCTCCTCTAGTCTCTACTTTTAGC CAAAGAAATGAACACTCCCAGGAGCTGGAAGTGAAATCTATGATGTGAAACACTTTGCCT CTTGTGTATTGTGTCATAAACAGATGAATAAACTGAATTTTTACTTTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 2-1369, gnl|bosTau2|chr22 (3943886-3942511) | |
| 2-1369, gnl|Hg17|chr4 (154587574-154586227) | |
| 2-1369, gnl|Mm7|chr11 (78657747-78659182) | |
| 106-207, gnl|bosTau2|chr10 (37005755-37005856) | |
| 106-207, gnl|canFam2|chr30 (28199510-28199721) | |
| 106-207, gnl|hg17|chr15 (58461800-58462012) | |
| 106-207, gnl|Hg17|chr15 (58461932-58461831) | |
| 106-207, gnl|loxAfr1|scaffold_30756 (5068-4851) | |
| 106-207, gnl|mm7|chr9 (69499209-69498989) | |
| 106-207, gnl|Mm7|chr9 (69499069-69499170) | |
| 106-207, gnl|monDom2|scaffold_12 (54254181-54253975) | |
| 106-207, gnl|oryCun1|scaffold_207488 (16344-16130) | |
| 106-207, gnl|panTro1|chr16 (58886248-58886460) | |
| 106-207, gnl|rheMac2|chr7 (38788156-38788368) | |
| 106-207, gnl|rn3|chr8 (73930641-73930421) | |
| 298-415, gnl|bosTau2|chr10 (37024523-37024640) | |
| 298-415, gnl|Hg17|chr15 (58440548-58440431) | |
| 298-415, gnl|Mm7|chr9 (69511453-69511570) | |
| 1016-1365, gnl|bosTau2|chr10 (37035540-37035903) | |
| 1016-1365, gnl|canFam2|chr30 (28168974-28169278) | |
| 1016-1365, gnl|dasNov1|scaffold_9655 (89201-89504) | |
| 1016-1365, gnl|echTel1|scaffold_307963 (2980-2688) | |
| 1016-1365, gnl|hg17|chr15 (58426822-58427121) | |
| 1016-1365, gnl|Hg17|chr15 (58427182-58426830) | |
| 1016-1365, gnl|loxAfr1|scaffold_891 (88390-88119) | |
| 1016-1365, gnl|mm7|chr9 (69523580-69523295) | |
| 1016-1365, gnl|Mm7|chr9 (69523232-69523570) | |
| 1016-1365, gnl|monDom2|scaffold_12 (54291648-54291324) | |
| 1016-1365, gnl|oryCun1|scaffold_206922 (38566-38859) | |
| 1016-1365, gnl|panTro1|chr16 (58853368-58853667) | |
| 1016-1365, gnl|rheMac2|chr7 (38755597-38755884) | |
| 1016-1365, gnl|rn3|chr8 (73953102-73952822) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-1369, gnl|bosTau2|chr22 (3943886-3942511) | |
| 2-1369, gnl|Hg17|chr4 (154587574-154586227) | |
| 2-1369, gnl|Mm7|chr11 (78657747-78659182) | |
| 106-207, gnl|bosTau2|chr10 (37005755-37005856) | |
| 106-207, gnl|canFam2|chr30 (28199510-28199721) | |
| 106-207, gnl|hg17|chr15 (58461800-58462012) | |
| 106-207, gnl|Hg17|chr15 (58461932-58461831) | |
| 106-207, gnl|loxAfr1|scaffold_30756 (5068-4851) | |
| 106-207, gnl|mm7|chr9 (69499209-69498989) | |
| 106-207, gnl|Mm7|chr9 (69499069-69499170) | |
| 106-207, gnl|monDom2|scaffold_12 (54254181-54253975) | |
| 106-207, gnl|oryCun1|scaffold_207488 (16344-16130) | |
| 106-207, gnl|panTro1|chr16 (58886248-58886460) | |
| 106-207, gnl|rheMac2|chr7 (38788156-38788368) | |
| 106-207, gnl|rn3|chr8 (73930641-73930421) | |
| 298-415, gnl|bosTau2|chr10 (37024523-37024640) | |
| 298-415, gnl|Hg17|chr15 (58440548-58440431) | |
| 298-415, gnl|Mm7|chr9 (69511453-69511570) | |
| 1016-1365, gnl|bosTau2|chr10 (37035540-37035903) | |
| 1016-1365, gnl|canFam2|chr30 (28168974-28169278) | |
| 1016-1365, gnl|dasNov1|scaffold_9655 (89201-89504) | |
| 1016-1365, gnl|echTel1|scaffold_307963 (2980-2688) | |
| 1016-1365, gnl|hg17|chr15 (58426822-58427121) | |
| 1016-1365, gnl|Hg17|chr15 (58427182-58426830) | |
| 1016-1365, gnl|loxAfr1|scaffold_891 (88390-88119) | |
| 1016-1365, gnl|mm7|chr9 (69523580-69523295) | |
| 1016-1365, gnl|Mm7|chr9 (69523232-69523570) | |
| 1016-1365, gnl|monDom2|scaffold_12 (54291648-54291324) | |
| 1016-1365, gnl|oryCun1|scaffold_206922 (38566-38859) | |
| 1016-1365, gnl|panTro1|chr16 (58853368-58853667) | |
| 1016-1365, gnl|rheMac2|chr7 (38755597-38755884) | |
| 1016-1365, gnl|rn3|chr8 (73953102-73952822) |
| Expressed library(ies): 69 entry(ies) | More info |
| Expressed library(ies): 69 entry(ies) | Help | Less info |
| fat (3.09598) | |
| pro (2.04813) | |
| nep (2.02317) | |
| mcp (1.53584) | |
| eep (1.47077) | |
| amn (1.25313) | |
| clu (1.19646) | |
| jca (1.1396) | |
| bla (1.11912) | |
| eru (0.960384) | |
| nlu (0.958405) | |
| ese (0.885516) | |
| ton (0.877501) | |
| sin (0.874738) | |
| cje (0.826173) | |
| eje (0.79067) | |
| aor (0.781097) | |
| elu (0.770713) | |
| ski (0.733676) | |
| fty (0.703359) | |
| nbm (0.695272) | |
| nca (0.684369) | |
| nco (0.646935) | |
| mga (0.64082) | |
| cly (0.603209) | |
| jej (0.593531) | |
| liv (0.585137) | |
| col (0.585023) | |
| csk (0.562984) | |
| cga (0.558191) | |
| che (0.545256) | |
| nmm (0.531209) | |
| ill (0.526778) | |
| rec (0.519211) | |
| duo (0.518403) | |
| eye (0.511509) | |
| sug (0.509165) | |
| hyp (0.42851) | |
| pty (0.428143) | |
| mas (0.42061) | |
| cty (0.41632) | |
| ute (0.398353) | |
| cov (0.396458) | |
| sag (0.36543) | |
| gul (0.355177) | |
| nje (0.33184) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lin (0.291206) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 69 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (3.09598) | |
| pro (2.04813) | |
| nep (2.02317) | |
| mcp (1.53584) | |
| eep (1.47077) | |
| amn (1.25313) | |
| clu (1.19646) | |
| jca (1.1396) | |
| bla (1.11912) | |
| eru (0.960384) | |
| nlu (0.958405) | |
| ese (0.885516) | |
| ton (0.877501) | |
| sin (0.874738) | |
| cje (0.826173) | |
| eje (0.79067) | |
| aor (0.781097) | |
| elu (0.770713) | |
| ski (0.733676) | |
| fty (0.703359) | |
| nbm (0.695272) | |
| nca (0.684369) | |
| nco (0.646935) | |
| mga (0.64082) | |
| cly (0.603209) | |
| jej (0.593531) | |
| liv (0.585137) | |
| col (0.585023) | |
| csk (0.562984) | |
| cga (0.558191) | |
| che (0.545256) | |
| nmm (0.531209) | |
| ill (0.526778) | |
| rec (0.519211) | |
| duo (0.518403) | |
| eye (0.511509) | |
| sug (0.509165) | |
| hyp (0.42851) | |
| pty (0.428143) | |
| mas (0.42061) | |
| cty (0.41632) | |
| ute (0.398353) | |
| cov (0.396458) | |
| sag (0.36543) | |
| gul (0.355177) | |
| nje (0.33184) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lin (0.291206) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ecc (0.115035) | |
| spc (0.113366) |