Non-Coding RNA Search

Ss1.1-Lng1-LNG010001H12.5

Sequence:


               
               TTTTTTCTCTTGAATAGAGAGGCTGTGTGTATCATAGTCCCCTCCCTTAGCTATTGGCTT
TCTCCTCTTACCAGGAGGTACCCATGATCCCTCGGCCCCACTACACCCAACCTGGCTGTG
TCTACTTCATCTGTTTGCTCCGAGATGACTTGCTGCTTCGTCAGGGTGACTGTGTATATC
TGATGAGGGATAGTCGGCGCACCCCTGATGGCCACCCAGTTCGGCAGTCTTATCGACTAT
TATCTCACATTAACAGAGATAAACTTGACATATTCCGCATTGAGAAGCTTTGGAAGAATG
AAAAAGAGGAACGGTTTGCCTTTGGTCACCATTATTTTCGTCCCCATGAAACCCACCACT
CTCCATCCCGTCGGTTCTATCACAATGAGCTATTTCGGGTGCCACTTTATGAGATAATTC
CCTTGGAGGCTGTGGTGGGGACCTGCTGTGTATTGGATCTTTATACATATTGTAAAGGTA
AGTGATCTGGACTACTTTAATAATCTCCTGTTCCCTAATTCATTAACCTACAACTGTTCA
TTCCTATAGTCTCTCTCTGATAGAAAAGACTATCTAAGGGAACTATGAAGCTTCAAAGAG
CTATGTAACATTTTTTCTTTCTTTTACCTAGTGCTTGGTATTCAGTAAATGTTAATTCTC
TTTTTGTTAATTTAACTCATATAATTCTTCTACTGTGTATTTAACATTCTATTAGTATTT
GTAGGAAGATAAGTTACTTCACACACCCATTCCAGAATCCCTGTGGCCATCATTAACTCT
CTGCATTAAACCAAAAAAGCACAATAGTTTCATAAGATTTGTGATTAAAAGTGGAGTCAG
GAATCTGATTTCACATTTCAGCTCCACCACTTTTTACCTGTGTGCCCTTGGGCAAGTTAC
TTAGCCTACCAAAAATAGGGATTAGTATCTATTTTAGAGAGTTTTGTAAGAATTAAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCTCTTGAATAGAGAGGCTGTGTGTATCATAGTCCCCTCCCTTAGCTATTGGCTT
TCTCCTCTTACCAGGAGGTACCCATGATCCCTCGGCCCCACTACACCCAACCTGGCTGTG
TCTACTTCATCTGTTTGCTCCGAGATGACTTGCTGCTTCGTCAGGGTGACTGTGTATATC
TGATGAGGGATAGTCGGCGCACCCCTGATGGCCACCCAGTTCGGCAGTCTTATCGACTAT
TATCTCACATTAACAGAGATAAACTTGACATATTCCGCATTGAGAAGCTTTGGAAGAATG
AAAAAGAGGAACGGTTTGCCTTTGGTCACCATTATTTTCGTCCCCATGAAACCCACCACT
CTCCATCCCGTCGGTTCTATCACAATGAGCTATTTCGGGTGCCACTTTATGAGATAATTC
CCTTGGAGGCTGTGGTGGGGACCTGCTGTGTATTGGATCTTTATACATATTGTAAAGGTA
AGTGATCTGGACTACTTTAATAATCTCCTGTTCCCTAATTCATTAACCTACAACTGTTCA
TTCCTATAGTCTCTCTCTGATAGAAAAGACTATCTAAGGGAACTATGAAGCTTCAAAGAG
CTATGTAACATTTTTTCTTTCTTTTACCTAGTGCTTGGTATTCAGTAAATGTTAATTCTC
TTTTTGTTAATTTAACTCATATAATTCTTCTACTGTGTATTTAACATTCTATTAGTATTT
GTAGGAAGATAAGTTACTTCACACACCCATTCCAGAATCCCTGTGGCCATCATTAACTCT
CTGCATTAAACCAAAAAAGCACAATAGTTTCATAAGATTTGTGATTAAAAGTGGAGTCAG
GAATCTGATTTCACATTTCAGCTCCACCACTTTTTACCTGTGTGCCCTTGGGCAAGTTAC
TTAGCCTACCAAAAATAGGGATTAGTATCTATTTTAGAGAGTTTTGTAAGAATTAAATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874732|ref|XP_590597.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874732|ref|XP_590597.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               822-941, - strand, RNAz p=0.64705

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               822-941, - strand, RNAz p=0.64705

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-168, gnl|bosTau2|chr3 (9625133-9624969)
               

               
               2-168, gnl|Hg17|chr1 (152127197-152127044)
               

               
               2-168, gnl|Mm7|chr3 (89182717-89182880)
               


               
               301-736, gnl|bosTau2|chr3 (9624216-9623788)
               

               
               301-736, gnl|Hg17|chr1 (152126354-152125668)
               


               
               746-960, gnl|bosTau2|chr3 (9622536-9622321)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-168, gnl|bosTau2|chr3 (9625133-9624969)
               

               
               2-168, gnl|Hg17|chr1 (152127197-152127044)
               

               
               2-168, gnl|Mm7|chr3 (89182717-89182880)
               


               
               301-736, gnl|bosTau2|chr3 (9624216-9623788)
               

               
               301-736, gnl|Hg17|chr1 (152126354-152125668)
               


               
               746-960, gnl|bosTau2|chr3 (9622536-9622321)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	2-168, gnl\|bosTau2\|chr3 (9625133-9624969)
	2-168, gnl\|Hg17\|chr1 (152127197-152127044)
	2-168, gnl\|Mm7\|chr3 (89182717-89182880)

	301-736, gnl\|bosTau2\|chr3 (9624216-9623788)
	301-736, gnl\|Hg17\|chr1 (152126354-152125668)

	746-960, gnl\|bosTau2\|chr3 (9622536-9622321)