Ss1.1-Lng1-LNG010002A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGGGAGCCGCCGGGTTGAGAGGAGCGTGGCCTTCTCCTCTCCCCACCATGGCGTGTGC TCGTCCACTGATATCAGTGTACTCAGAAAAAGGGGAGTCATCTGGCAAAAATGTCACTTT GCCTGCTGTGTTCAAGGCTCCCATTCGACCAGACATCGTGAACTTTGTTCACACCAACCT GCGCAAAAACAACAGACAGCCATATGCTGTCAGTGAATTAGCAGGTCATCAAACCAGTGC TGAGTCTTGGGGTACTGGCAGAGCTGTGGCTCGAATTCCCAGGGTTCGAGGTGGTGGGAC TCACCGTTCTGGCCAGGGTGCTTTTGGAAATATGTGTCGTGGGGGCCGCATGTTTGCGCC AACCAAGACCTGGCGACGTTGGCATCGCAGAGTGAACACAACACAGAAGCGATATGCCAT CTGCTCTGCACTGGCTGCCTCAGCCTTACCAGCGCTGGTCATGTCTAAAGGTCATCGGAT TGAGGAAGTTCCTGAACTTCCTTTGGTGGTTGAAGATAAAGTTGAAAGCTACAAAAAAAC CAAGGAGGCTGTTCTGCTTCTGAAGAAGCTTAAGGCCTGGAATGATATCAAGAAGGTTTA TGCCTCTCAGCGAATGAGAGCTGGTAAAGGCAAAATGAGAAACCGTCGCCGAATCCAGCG CAGGGGACCCTGCATCATCTATAATGAGGACAATGGTATCATCAAAGCCTTCAGAAACAT CCCTGGAATTACTCTGCTTAACGTAAGCAAACTGAACATTTTGAAACTTGCTCCTGGTGG GCATGTGGGACGTTTCTGCATTTGGACTGAAAGTGCTTTCCGCAAGTTAGATGAGCTCTA TGGCACTTGGCGTAAAGCTGCTACCCTCAAGAGTAACTACAACCTTCCCATGCATAAGAT GCTCAATACAGACCTTAGCAGAATCTTGAAAAGCCCAGAGATCCAAAGAGCCCTCCGCGC ACCACGCAAGAAGATTCATCGTAGAGTTCTGAAGAAGAATCCACTGAAAAACCTGAGAAT CATGTTGAAGCTAAACCCGTATGCAAAGACAATGCGCCGAAACACCATTCTTCGCCAGGC CAGGAATCACAAAATCCGGATGGATAAGGCGGCAGCAGCACTGAAAGCCAAATCAGGTGA GAAGGGGGTTCCAGACAAGAAGCCCGTGGTAGAGAAGAAAGGAAAGAAGGCTATTGGCAA GAAGGCTGTTGGCGTTAAAAAGCAGAAGAAGCCTTTGGTGGGGAAAAAGGCTGTAGTGAC CAAGAAACCAGCAGCTGAAAAGAAGCCTGCAGAAAAGAAGCCCACCACAGAAGAAAAGAA GGCTGTTGCATAAACTTAAATTTGTTTAGTCCATAAAAGTCAAATCACTTGGACAGCTAA TTTTGAATAAAGACCTGATCAAAGCAGCAGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGGGAGCCGCCGGGTTGAGAGGAGCGTGGCCTTCTCCTCTCCCCACCATGGCGTGTGC TCGTCCACTGATATCAGTGTACTCAGAAAAAGGGGAGTCATCTGGCAAAAATGTCACTTT GCCTGCTGTGTTCAAGGCTCCCATTCGACCAGACATCGTGAACTTTGTTCACACCAACCT GCGCAAAAACAACAGACAGCCATATGCTGTCAGTGAATTAGCAGGTCATCAAACCAGTGC TGAGTCTTGGGGTACTGGCAGAGCTGTGGCTCGAATTCCCAGGGTTCGAGGTGGTGGGAC TCACCGTTCTGGCCAGGGTGCTTTTGGAAATATGTGTCGTGGGGGCCGCATGTTTGCGCC AACCAAGACCTGGCGACGTTGGCATCGCAGAGTGAACACAACACAGAAGCGATATGCCAT CTGCTCTGCACTGGCTGCCTCAGCCTTACCAGCGCTGGTCATGTCTAAAGGTCATCGGAT TGAGGAAGTTCCTGAACTTCCTTTGGTGGTTGAAGATAAAGTTGAAAGCTACAAAAAAAC CAAGGAGGCTGTTCTGCTTCTGAAGAAGCTTAAGGCCTGGAATGATATCAAGAAGGTTTA TGCCTCTCAGCGAATGAGAGCTGGTAAAGGCAAAATGAGAAACCGTCGCCGAATCCAGCG CAGGGGACCCTGCATCATCTATAATGAGGACAATGGTATCATCAAAGCCTTCAGAAACAT CCCTGGAATTACTCTGCTTAACGTAAGCAAACTGAACATTTTGAAACTTGCTCCTGGTGG GCATGTGGGACGTTTCTGCATTTGGACTGAAAGTGCTTTCCGCAAGTTAGATGAGCTCTA TGGCACTTGGCGTAAAGCTGCTACCCTCAAGAGTAACTACAACCTTCCCATGCATAAGAT GCTCAATACAGACCTTAGCAGAATCTTGAAAAGCCCAGAGATCCAAAGAGCCCTCCGCGC ACCACGCAAGAAGATTCATCGTAGAGTTCTGAAGAAGAATCCACTGAAAAACCTGAGAAT CATGTTGAAGCTAAACCCGTATGCAAAGACAATGCGCCGAAACACCATTCTTCGCCAGGC CAGGAATCACAAAATCCGGATGGATAAGGCGGCAGCAGCACTGAAAGCCAAATCAGGTGA GAAGGGGGTTCCAGACAAGAAGCCCGTGGTAGAGAAGAAAGGAAAGAAGGCTATTGGCAA GAAGGCTGTTGGCGTTAAAAAGCAGAAGAAGCCTTTGGTGGGGAAAAAGGCTGTAGTGAC CAAGAAACCAGCAGCTGAAAAGAAGCCTGCAGAAAAGAAGCCCACCACAGAAGAAAAGAA GGCTGTTGCATAAACTTAAATTTGTTTAGTCCATAAAAGTCAAATCACTTGGACAGCTAA TTTTGAATAAAGACCTGATCAAAGCAGCAGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 109-1219, - strand, RNAz p=0.639719 | |
| 481-800, + strand, RNAz p=0.972364 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 109-1219, - strand, RNAz p=0.639719 | |
| 481-800, + strand, RNAz p=0.972364 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-1443, gnl|bosTau2|chr19 (7691529-7690097) | |
| 1-1443, gnl|Hg17|chr3 (186619317-186617870) | |
| 1-1443, gnl|Mm7|chr1 (143020930-143019539) | |
| 52-226, gnl|bosTau2|chr17 (17302649-17302823) | |
| 52-226, gnl|canFam2|chr30 (33764273-33764428) | |
| 52-226, gnl|danRer3|chr18 (23525203-23525358) | |
| 52-226, gnl|dasNov1|scaffold_16676 (44360-44205) | |
| 52-226, gnl|echTel1|scaffold_288666 (89625-89780) | |
| 52-226, gnl|fr1|chrUn (67920730-67920575) | |
| 52-226, gnl|galGal2|chr10 (19193608-19193763) | |
| 52-226, gnl|hg17|chr15 (64582749-64582904) | |
| 52-226, gnl|Hg17|chr15 (64582922-64582748) | |
| 52-226, gnl|loxAfr1|scaffold_38887 (1221-1066) | |
| 52-226, gnl|mm7|chr9 (64203253-64203098) | |
| 52-226, gnl|Mm7|chr9 (64203078-64203252) | |
| 52-226, gnl|monDom2|scaffold_12 (46381355-46381200) | |
| 52-226, gnl|oryCun1|scaffold_145482 (13733-13887) | |
| 52-226, gnl|panTro1|chr16 (65087809-65087964) | |
| 52-226, gnl|rheMac2|chr7 (45037352-45037507) | |
| 52-226, gnl|rn3|chr8 (68387451-68387296) | |
| 52-226, gnl|tetNig1|chr13 (7619517-7619672) | |
| 52-226, gnl|xenTro1|scaffold_862 (318900-319055) | |
| 408-618, gnl|bosTau2|chr11 (62719027-62719234) | |
| 408-618, gnl|Hg17|chr15 (64582066-64581161) | |
| 408-618, gnl|Mm7|chr1 (143020543-143020314) | |
| 867-1192, gnl|bosTau2|chr11 (62719452-62719748) | |
| 867-1192, gnl|Hg17|chr15 (64580356-64578928) | |
| 867-1192, gnl|Mm7|chr1 (143020067-143019721) | |
| 1226-1439, gnl|bosTau2|chr15 (50587709-50587494) | |
| 1226-1439, gnl|Hg17|chr3 (186618149-186617873) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1443, gnl|bosTau2|chr19 (7691529-7690097) | |
| 1-1443, gnl|Hg17|chr3 (186619317-186617870) | |
| 1-1443, gnl|Mm7|chr1 (143020930-143019539) | |
| 52-226, gnl|bosTau2|chr17 (17302649-17302823) | |
| 52-226, gnl|canFam2|chr30 (33764273-33764428) | |
| 52-226, gnl|danRer3|chr18 (23525203-23525358) | |
| 52-226, gnl|dasNov1|scaffold_16676 (44360-44205) | |
| 52-226, gnl|echTel1|scaffold_288666 (89625-89780) | |
| 52-226, gnl|fr1|chrUn (67920730-67920575) | |
| 52-226, gnl|galGal2|chr10 (19193608-19193763) | |
| 52-226, gnl|hg17|chr15 (64582749-64582904) | |
| 52-226, gnl|Hg17|chr15 (64582922-64582748) | |
| 52-226, gnl|loxAfr1|scaffold_38887 (1221-1066) | |
| 52-226, gnl|mm7|chr9 (64203253-64203098) | |
| 52-226, gnl|Mm7|chr9 (64203078-64203252) | |
| 52-226, gnl|monDom2|scaffold_12 (46381355-46381200) | |
| 52-226, gnl|oryCun1|scaffold_145482 (13733-13887) | |
| 52-226, gnl|panTro1|chr16 (65087809-65087964) | |
| 52-226, gnl|rheMac2|chr7 (45037352-45037507) | |
| 52-226, gnl|rn3|chr8 (68387451-68387296) | |
| 52-226, gnl|tetNig1|chr13 (7619517-7619672) | |
| 52-226, gnl|xenTro1|scaffold_862 (318900-319055) | |
| 408-618, gnl|bosTau2|chr11 (62719027-62719234) | |
| 408-618, gnl|Hg17|chr15 (64582066-64581161) | |
| 408-618, gnl|Mm7|chr1 (143020543-143020314) | |
| 867-1192, gnl|bosTau2|chr11 (62719452-62719748) | |
| 867-1192, gnl|Hg17|chr15 (64580356-64578928) | |
| 867-1192, gnl|Mm7|chr1 (143020067-143019721) | |
| 1226-1439, gnl|bosTau2|chr15 (50587709-50587494) | |
| 1226-1439, gnl|Hg17|chr3 (186618149-186617873) |
| Expressed library(ies): 92 entry(ies) | More info |
| Expressed library(ies): 92 entry(ies) | Help | Less info |
| ski (6.45635) | |
| bla (5.34693) | |
| ova (5.16529) | |
| tbr (4.47117) | |
| sug (4.45519) | |
| spl (4.00916) | |
| sto (3.95612) | |
| csk (3.94089) | |
| tra (3.81585) | |
| fat (3.68568) | |
| thg (3.67694) | |
| rec (3.28834) | |
| pro (3.0722) | |
| lyg (3.06136) | |
| mgp (2.99885) | |
| eep (2.94154) | |
| eru (2.7611) | |
| ste (2.70416) | |
| lnt (2.70386) | |
| nlu (2.68353) | |
| sin (2.62421) | |
| eje (2.56968) | |
| ldo (2.42507) | |
| isp (2.40601) | |
| pan (2.3596) | |
| aor (2.34329) | |
| liv (2.34055) | |
| gul (2.30865) | |
| mcp (2.21843) | |
| nep (2.2071) | |
| lin (2.18404) | |
| fty (2.11008) | |
| ebs (2.01112) | |
| med (1.97628) | |
| ecc (1.9556) | |
| cbr (1.91963) | |
| nca (1.91623) | |
| cmu (1.86393) | |
| sme (1.83262) | |
| sag (1.82715) | |
| nco (1.77907) | |
| jca (1.7094) | |
| amn (1.67084) | |
| bfe (1.49858) | |
| nmm (1.46082) | |
| hea (1.43149) | |
| ese (1.39152) | |
| eye (1.36402) | |
| ssp (1.3552) | |
| vin (1.33023) | |
| clu (1.3161) | |
| nms (1.28315) | |
| cty (1.24896) | |
| spc (1.24702) | |
| elu (1.15607) | |
| fce (1.08637) | |
| pgl (1.06635) | |
| ill (1.05356) | |
| ret (1.02987) | |
| pty (0.999001) | |
| nje (0.99552) | |
| cst (0.980255) | |
| col (0.975039) | |
| mga (0.96123) | |
| cbe (0.956938) | |
| che (0.954198) | |
| ute (0.929491) | |
| ece (0.917221) | |
| eli (0.910885) | |
| lun (0.902935) | |
| nbm (0.893921) | |
| ton (0.877501) | |
| cut (0.849618) | |
| tes (0.831255) | |
| cje (0.826173) | |
| cki (0.826173) | |
| fcc (0.791139) | |
| kid (0.778412) | |
| fbs (0.701385) | |
| hlv (0.696282) | |
| mas (0.630915) | |
| fli (0.608643) | |
| cly (0.603209) | |
| fhi (0.508733) | |
| jej (0.494609) | |
| mgm (0.360685) | |
| duo (0.345602) | |
| fco (0.314416) | |
| cag (0.302389) | |
| cte (0.29274) | |
| cli (0.152812) | |
| cbl (0.114797) |
| Expressed library(ies): 92 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (6.45635) | |
| bla (5.34693) | |
| ova (5.16529) | |
| tbr (4.47117) | |
| sug (4.45519) | |
| spl (4.00916) | |
| sto (3.95612) | |
| csk (3.94089) | |
| tra (3.81585) | |
| fat (3.68568) | |
| thg (3.67694) | |
| rec (3.28834) | |
| pro (3.0722) | |
| lyg (3.06136) | |
| mgp (2.99885) | |
| eep (2.94154) | |
| eru (2.7611) | |
| ste (2.70416) | |
| lnt (2.70386) | |
| nlu (2.68353) | |
| sin (2.62421) | |
| eje (2.56968) | |
| ldo (2.42507) | |
| isp (2.40601) | |
| pan (2.3596) | |
| aor (2.34329) | |
| liv (2.34055) | |
| gul (2.30865) | |
| mcp (2.21843) | |
| nep (2.2071) | |
| lin (2.18404) | |
| fty (2.11008) | |
| ebs (2.01112) | |
| med (1.97628) | |
| ecc (1.9556) | |
| cbr (1.91963) | |
| nca (1.91623) | |
| cmu (1.86393) | |
| sme (1.83262) | |
| sag (1.82715) | |
| nco (1.77907) | |
| jca (1.7094) | |
| amn (1.67084) | |
| bfe (1.49858) | |
| nmm (1.46082) | |
| hea (1.43149) | |
| ese (1.39152) | |
| eye (1.36402) | |
| ssp (1.3552) | |
| vin (1.33023) | |
| clu (1.3161) | |
| nms (1.28315) | |
| cty (1.24896) | |
| spc (1.24702) | |
| elu (1.15607) | |
| fce (1.08637) | |
| pgl (1.06635) | |
| ill (1.05356) | |
| ret (1.02987) | |
| pty (0.999001) | |
| nje (0.99552) | |
| cst (0.980255) | |
| col (0.975039) | |
| mga (0.96123) | |
| cbe (0.956938) | |
| che (0.954198) | |
| ute (0.929491) | |
| ece (0.917221) | |
| eli (0.910885) | |
| lun (0.902935) | |
| nbm (0.893921) | |
| ton (0.877501) | |
| cut (0.849618) | |
| tes (0.831255) | |
| cje (0.826173) | |
| cki (0.826173) | |
| fcc (0.791139) | |
| kid (0.778412) | |
| fbs (0.701385) | |
| hlv (0.696282) | |
| mas (0.630915) | |
| fli (0.608643) | |
| cly (0.603209) | |
| fhi (0.508733) | |
| jej (0.494609) | |
| mgm (0.360685) | |
| duo (0.345602) | |
| fco (0.314416) | |
| cag (0.302389) | |
| cte (0.29274) | |
| cli (0.152812) | |
| cbl (0.114797) |