Non-Coding RNA Search

Ss1.1-Lng1-LNG010002A12.5.5

Sequence:


               
               AAAAAAAAAAAAAAAAAAAACTCTATCGGCAGCTTCCGACCGCGGGATGTCTCACAGGAA
GTTCTCCGCTCCCAGGCACGGGTCCCTGGGCTTCCTGCCTCGGAAGCGTAGCAGCCGGCA
CCGCGGGAAGGTGAAGAGTTTCCCCAAGGATGACTCTTCCAAGCCCGTGCACCTCACCGC
CTTCCTTGGCTACAAGGCTGGCATGACCCACATTGTGAGGGAGGTCGATAGGCCTGGGTC
CAAGGTGAACAAGAAGGAAGTTGTGGAGGCTGTGACTATTGTGGAGACGCCACCCATGGT
GATTGTGGGCATCGTGGGCTATGTGGAAACCCCTCGGGGCCTCCGGACCTTTAAGACCAT
CTTCGCGGAGCACATCAGCGATGAGTGCAAGAGGCGCTTCTATAAGAACTGGCATAAATC
TAAGAAGAAGGCCTTCACCAAATACTGCAAGAAGTGGCAGGATGAAGATGGCAAGAAGCA
GTTGGAGAGGGACTTCAGTAGCATGAAGAAGTACTGCCAGGTCATCCGGGTCATTGCCCA
CACCCAGATGCGCCTGCTTCCTCTCCGCCAGAAGAAGGCCCACCTCATGGAGATCCAGGT
GAACGGAGGCACAGTGGCTGAAAAACTGGACTGGGCCCGGGAGAGGCTAGAGCAGCAGGT
CCCTGTGAACCAGGTGTTTGGGCAGGATGAGATGATTGATGTCATTGGCGTGACCAAGGG
CAAGGGCTACAAAGGGGTCACCAGCCGTTGGCATACCAAGAAGCTGCCCCGGAAGACCCA
CCGGGGGCTCCGCAAGGTTGCCTGTATTGGCGCGTGGCATCCTGCGCGTGTGGCCTTCTC
CGTGGCCCGGGCTGGGCAGAAAGGCTACCATCACCGCACAGAGATCAACAAGAAGATCTA
CAAGATCGGCCAGGGCTACCTCATCAAGGACGGCAAGCTGATCAAGAACAACGCCTCCAC
GGATTACGATCTCTCCGACAAGAGCATCAATCCTCTGGGAGGCTTTGTCCACTATGGTGA
GGTGACCAATGACTTTGTCATGCTCAAAGGCTGCGTCGTGGGGACCAAGAAGCGAGTGCT
CACCCTTCGCAAGTCCTTGCTGGTACAGACCAAACGACGGGCCCTGGAGAAGATCGATCT
CAAGTTTATTGACACCACCTCCAAGTTTGGCCATGGCCGCTTCCAGACTGTGGAGGAGAA
GAAGGCCTTCATGGGACCACTTAAGAAGGACCGAATTGCAAAGGAAGAAGGGGCCTAATG
ACAGAGATTGTAAGGCTGGTAGAGTCTCAATAAAGTTATTTTCCAGTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAACTCTATCGGCAGCTTCCGACCGCGGGATGTCTCACAGGAA
GTTCTCCGCTCCCAGGCACGGGTCCCTGGGCTTCCTGCCTCGGAAGCGTAGCAGCCGGCA
CCGCGGGAAGGTGAAGAGTTTCCCCAAGGATGACTCTTCCAAGCCCGTGCACCTCACCGC
CTTCCTTGGCTACAAGGCTGGCATGACCCACATTGTGAGGGAGGTCGATAGGCCTGGGTC
CAAGGTGAACAAGAAGGAAGTTGTGGAGGCTGTGACTATTGTGGAGACGCCACCCATGGT
GATTGTGGGCATCGTGGGCTATGTGGAAACCCCTCGGGGCCTCCGGACCTTTAAGACCAT
CTTCGCGGAGCACATCAGCGATGAGTGCAAGAGGCGCTTCTATAAGAACTGGCATAAATC
TAAGAAGAAGGCCTTCACCAAATACTGCAAGAAGTGGCAGGATGAAGATGGCAAGAAGCA
GTTGGAGAGGGACTTCAGTAGCATGAAGAAGTACTGCCAGGTCATCCGGGTCATTGCCCA
CACCCAGATGCGCCTGCTTCCTCTCCGCCAGAAGAAGGCCCACCTCATGGAGATCCAGGT
GAACGGAGGCACAGTGGCTGAAAAACTGGACTGGGCCCGGGAGAGGCTAGAGCAGCAGGT
CCCTGTGAACCAGGTGTTTGGGCAGGATGAGATGATTGATGTCATTGGCGTGACCAAGGG
CAAGGGCTACAAAGGGGTCACCAGCCGTTGGCATACCAAGAAGCTGCCCCGGAAGACCCA
CCGGGGGCTCCGCAAGGTTGCCTGTATTGGCGCGTGGCATCCTGCGCGTGTGGCCTTCTC
CGTGGCCCGGGCTGGGCAGAAAGGCTACCATCACCGCACAGAGATCAACAAGAAGATCTA
CAAGATCGGCCAGGGCTACCTCATCAAGGACGGCAAGCTGATCAAGAACAACGCCTCCAC
GGATTACGATCTCTCCGACAAGAGCATCAATCCTCTGGGAGGCTTTGTCCACTATGGTGA
GGTGACCAATGACTTTGTCATGCTCAAAGGCTGCGTCGTGGGGACCAAGAAGCGAGTGCT
CACCCTTCGCAAGTCCTTGCTGGTACAGACCAAACGACGGGCCCTGGAGAAGATCGATCT
CAAGTTTATTGACACCACCTCCAAGTTTGGCCATGGCCGCTTCCAGACTGTGGAGGAGAA
GAAGGCCTTCATGGGACCACTTAAGAAGGACCGAATTGCAAAGGAAGAAGGGGCCTAATG
ACAGAGATTGTAAGGCTGGTAGAGTCTCAATAAAGTTATTTTCCAGTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5E9A8_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E9A8_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               380-499, + strand, RNAz p=0.539234

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               380-499, + strand, RNAz p=0.539234

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-1325, gnl|bosTau2|chr10 (29602293-29600989)
               

               
               21-1325, gnl|Hg17|chr6 (108433491-108432183)
               

               
               21-1325, gnl|Mm7|chrX (11635696-11637005)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-1325, gnl|bosTau2|chr10 (29602293-29600989)
               

               
               21-1325, gnl|Hg17|chr6 (108433491-108432183)
               

               
               21-1325, gnl|Mm7|chrX (11635696-11637005)

Expressed library(ies): 67 entry(ies)

More info

Expressed library(ies): 67 entry(ies)

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               eje (4.05218)
               

               
               col (2.92512)
               

               
               mcp (2.73038)
               

               
               elu (2.31214)
               

               
               med (2.09254)
               

               
               eep (2.08359)
               

               
               cag (1.81433)
               

               
               nco (1.61734)
               

               
               cly (1.56834)
               

               
               nbm (1.48987)
               

               
               fty (1.40672)
               

               
               eye (1.36402)
               

               
               cje (1.32188)
               

               
               ecc (1.26539)
               

               
               ese (1.26502)
               

               
               eru (1.20048)
               

               
               csp (1.1283)
               

               
               nep (1.10355)
               

               
               fce (1.08637)
               

               
               cov (1.05722)
               

               
               ill (1.05356)
               

               
               fbs (1.05208)
               

               
               cty (1.0408)
               

               
               lnt (0.996158)
               

               
               nje (0.99552)
               

               
               nca (0.958117)
               

               
               ton (0.877501)
               

               
               mas (0.84122)
               

               
               cst (0.840218)
               

               
               cga (0.837287)
               

               
               cki (0.826173)
               

               
               fli (0.811524)
               

               
               nlu (0.766724)
               

               
               eli (0.759071)
               

               
               pgl (0.7109)
               

               
               sin (0.69979)
               

               
               jca (0.683761)
               

               
               nmm (0.664011)
               

               
               jej (0.593531)
               

               
               hlv (0.557025)
               

               
               che (0.545256)
               

               
               cut (0.509771)
               

               
               clu (0.478583)
               

               
               ebs (0.473205)
               

               
               cbl (0.45919)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               cmu (0.372787)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               cbr (0.255951)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 67 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (4.05218)
               

               
               col (2.92512)
               

               
               mcp (2.73038)
               

               
               elu (2.31214)
               

               
               med (2.09254)
               

               
               eep (2.08359)
               

               
               cag (1.81433)
               

               
               nco (1.61734)
               

               
               cly (1.56834)
               

               
               nbm (1.48987)
               

               
               fty (1.40672)
               

               
               eye (1.36402)
               

               
               cje (1.32188)
               

               
               ecc (1.26539)
               

               
               ese (1.26502)
               

               
               eru (1.20048)
               

               
               csp (1.1283)
               

               
               nep (1.10355)
               

               
               fce (1.08637)
               

               
               cov (1.05722)
               

               
               ill (1.05356)
               

               
               fbs (1.05208)
               

               
               cty (1.0408)
               

               
               lnt (0.996158)
               

               
               nje (0.99552)
               

               
               nca (0.958117)
               

               
               ton (0.877501)
               

               
               mas (0.84122)
               

               
               cst (0.840218)
               

               
               cga (0.837287)
               

               
               cki (0.826173)
               

               
               fli (0.811524)
               

               
               nlu (0.766724)
               

               
               eli (0.759071)
               

               
               pgl (0.7109)
               

               
               sin (0.69979)
               

               
               jca (0.683761)
               

               
               nmm (0.664011)
               

               
               jej (0.593531)
               

               
               hlv (0.557025)
               

               
               che (0.545256)
               

               
               cut (0.509771)
               

               
               clu (0.478583)
               

               
               ebs (0.473205)
               

               
               cbl (0.45919)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               cmu (0.372787)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               cbr (0.255951)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	21-1325, gnl\|bosTau2\|chr10 (29602293-29600989)
	21-1325, gnl\|Hg17\|chr6 (108433491-108432183)
	21-1325, gnl\|Mm7\|chrX (11635696-11637005)

	eje (4.05218)
	col (2.92512)
	mcp (2.73038)
	elu (2.31214)
	med (2.09254)
	eep (2.08359)
	cag (1.81433)
	nco (1.61734)
	cly (1.56834)
	nbm (1.48987)
	fty (1.40672)
	eye (1.36402)
	cje (1.32188)
	ecc (1.26539)
	ese (1.26502)
	eru (1.20048)
	csp (1.1283)
	nep (1.10355)
	fce (1.08637)
	cov (1.05722)
	ill (1.05356)
	fbs (1.05208)
	cty (1.0408)
	lnt (0.996158)
	nje (0.99552)
	nca (0.958117)
	ton (0.877501)
	mas (0.84122)
	cst (0.840218)
	cga (0.837287)
	cki (0.826173)
	fli (0.811524)
	nlu (0.766724)
	eli (0.759071)
	pgl (0.7109)
	sin (0.69979)
	jca (0.683761)
	nmm (0.664011)
	jej (0.593531)
	hlv (0.557025)
	che (0.545256)
	cut (0.509771)
	clu (0.478583)
	ebs (0.473205)
	cbl (0.45919)
	hyp (0.42851)
	pty (0.428143)
	nms (0.427716)
	amn (0.417711)
	fcc (0.39557)
	cmu (0.372787)
	duo (0.345602)
	fhi (0.339155)
	spl (0.286369)
	cbr (0.255951)
	gul (0.177588)
	isp (0.150376)
	fat (0.147427)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	spc (0.113366)
	ldo (0.0970026)