Ss1.1-Lng1-LNG010002D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCGATGATTGGGTAGGCGAGCGAAGTTGGGTTCCGCGGGCCGCCTCCGCCTTTTTAGCC CTTAAGAACCTAGAAGCCCAGGTGACTCCTGGAGATCTCTGTTGCGTGATGACAGCTACG ATGAAGCCGGTGAGCAGGGTCCGGCGGCTGGGCTACGTGCTGCCATTTTGCTTCCTGGCC CAGGTTCTCTGGGGCGTCCCAGGGGCCCGGGCCCTGAACAACGGCTTGGCGAGGACCCCT ACCATGGGCTGGCTGCACTGGGAGCGCTTCATGTGCAATGTGGACTGTCAAGAAGATCCG GATTCCTGTATCAGCGAGAAGCTCTTCCGGCAGATAGCTGAGCTCATGGCCTCAGATGGC TGGAAGGATGCAGGTTATGAGTACCTATGCATTGATGACTGTTGGATGGCTCCCAAAAGG GATTCCCAAGGCAGACTTCAGGCAGACCCTAAACGCTTTCCTGGTGGGATCCGCCGCCTA GCCGATTATGTCCACAGCAAAGGACTGAAGCTAGGGATTTATGCAGATGTTGGAAATAAA ACCTGTGCTGGCTTCCCTGGCAGTTTTGGTTACTATGACATTGATGCCAAGACCTTTGCT GAGTGGGGAGTTGATCTGCTCAAATTCGATGGTTGTTACTGTGACAGTGTAAAACATTTG GCAGACGGTTATAAGCAAATGTCCTTGGCCCTGAACAGGACTGGCAGAAGCATTGTGTAC TCCTGTGAGTGGCCCCTTTATATGCAGCCCTTTTTTAAGCCCAATTACACCGAAATCCGA GAGTACTGCAATCACTGGAGAAATTTTGCTGACATTTATGATTCCTGGCAAAGTATAAAG AATATTTTGGACTGGACATCTTCTAACCAGGAGAAAATTGTTCCTGTTGCAGGACCAGGG GGTTGGAATGATCCAGATATGCTGGTGATTGGCAACTTTGGCCTCAGCTGGAATCAGGAG GTAACTCAGATGGCCCTCTGGGCTATCATGGCTGCTCCATTACTCATGTCCAATGACCTC CGACACATCAGCCCCAAAGCCAAAGCTCTTCTTCAGGATAAAGATGTAATAGCCATCAAC CAAGACCCCCTGGGCAAGCAGGGGCACCGGCTCAGAAAGGACAACAACTTTGAAGTGTGG GAAAGGCCTCTCTTGAACTTAGCCTGGGCTGTGGCTATGGTAAACCTGCAGGAGATCGGT GGCCCTCGTGCTTATACCATCTCTCTTACTTCCCTGGGTCAAGGACTAGCCTGTAATCCT GACTGTCTGATCACACAACTCCTCCCTGTGAAGAGGAGGCTTGGGTTTTATGAATGGACT TCAAGTTTAAAAACTCAAATAAATCCCACAGGCACTGTTTTGCTTCGGCTAGAAAGAGCA AGCTCGACTGCATCAAAAAGCTTCCTTTAAAATGTATTGTTTTGGAGTTCCCGTTGTGGT ACACCAGGATCAACAGTGTCTTTGCAGTGCTAGGACGGAGGTTGGATCCCTGGCCTGGCA CAGTGGGTTAAAAGGATCCAGCATTGTGGTGTAGGTCACAACCGCAGCTTGGATCTAATC CATGGCCCAGGAACTCCATATGTCACGGGGCAGCCAAAAAAGGAAAAAAAAAAAAGTCTT ATTCTTCTGTCTACCTTCAGCTGTTATTTCCTTGAGTAAATTTTTTCACACTTGCGTTTT TTTGATAATTACTTTTAAAACTATCTGAAGAGAATGTTTTGGGGAAAAGCTTTTGAACCT AATGTAAACTGCTGAGAAATAATAGCTTAATAATGTAAGTAAAATGTTAATTTATAGACA TACCTCATATCATTGCATTTCGCAAATACTACGGTTTTTGCTTTGTTTACAAATTGAACG TTTGTGTCAATCCTGTGTCCATCAGAAGTCTGTCGGCCCTGTTTTTCCAACAGCATCTGC TCACTTAATGTCTGTGTCACATTGTAGTAATTTCAGCAATATGTCAAACTTTTTCATTAT TATTTATCATGGTGATTGTGATCTTTGATGTTACTATTACAAAAAAAAATATGACTCAAA TGAAGACTTAGAGAATGGTTAGCATTTTTTAGCAATAAAGTATTTTTAAATTAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCGATGATTGGGTAGGCGAGCGAAGTTGGGTTCCGCGGGCCGCCTCCGCCTTTTTAGCC CTTAAGAACCTAGAAGCCCAGGTGACTCCTGGAGATCTCTGTTGCGTGATGACAGCTACG ATGAAGCCGGTGAGCAGGGTCCGGCGGCTGGGCTACGTGCTGCCATTTTGCTTCCTGGCC CAGGTTCTCTGGGGCGTCCCAGGGGCCCGGGCCCTGAACAACGGCTTGGCGAGGACCCCT ACCATGGGCTGGCTGCACTGGGAGCGCTTCATGTGCAATGTGGACTGTCAAGAAGATCCG GATTCCTGTATCAGCGAGAAGCTCTTCCGGCAGATAGCTGAGCTCATGGCCTCAGATGGC TGGAAGGATGCAGGTTATGAGTACCTATGCATTGATGACTGTTGGATGGCTCCCAAAAGG GATTCCCAAGGCAGACTTCAGGCAGACCCTAAACGCTTTCCTGGTGGGATCCGCCGCCTA GCCGATTATGTCCACAGCAAAGGACTGAAGCTAGGGATTTATGCAGATGTTGGAAATAAA ACCTGTGCTGGCTTCCCTGGCAGTTTTGGTTACTATGACATTGATGCCAAGACCTTTGCT GAGTGGGGAGTTGATCTGCTCAAATTCGATGGTTGTTACTGTGACAGTGTAAAACATTTG GCAGACGGTTATAAGCAAATGTCCTTGGCCCTGAACAGGACTGGCAGAAGCATTGTGTAC TCCTGTGAGTGGCCCCTTTATATGCAGCCCTTTTTTAAGCCCAATTACACCGAAATCCGA GAGTACTGCAATCACTGGAGAAATTTTGCTGACATTTATGATTCCTGGCAAAGTATAAAG AATATTTTGGACTGGACATCTTCTAACCAGGAGAAAATTGTTCCTGTTGCAGGACCAGGG GGTTGGAATGATCCAGATATGCTGGTGATTGGCAACTTTGGCCTCAGCTGGAATCAGGAG GTAACTCAGATGGCCCTCTGGGCTATCATGGCTGCTCCATTACTCATGTCCAATGACCTC CGACACATCAGCCCCAAAGCCAAAGCTCTTCTTCAGGATAAAGATGTAATAGCCATCAAC CAAGACCCCCTGGGCAAGCAGGGGCACCGGCTCAGAAAGGACAACAACTTTGAAGTGTGG GAAAGGCCTCTCTTGAACTTAGCCTGGGCTGTGGCTATGGTAAACCTGCAGGAGATCGGT GGCCCTCGTGCTTATACCATCTCTCTTACTTCCCTGGGTCAAGGACTAGCCTGTAATCCT GACTGTCTGATCACACAACTCCTCCCTGTGAAGAGGAGGCTTGGGTTTTATGAATGGACT TCAAGTTTAAAAACTCAAATAAATCCCACAGGCACTGTTTTGCTTCGGCTAGAAAGAGCA AGCTCGACTGCATCAAAAAGCTTCCTTTAAAATGTATTGTTTTGGAGTTCCCGTTGTGGT ACACCAGGATCAACAGTGTCTTTGCAGTGCTAGGACGGAGGTTGGATCCCTGGCCTGGCA CAGTGGGTTAAAAGGATCCAGCATTGTGGTGTAGGTCACAACCGCAGCTTGGATCTAATC CATGGCCCAGGAACTCCATATGTCACGGGGCAGCCAAAAAAGGAAAAAAAAAAAAGTCTT ATTCTTCTGTCTACCTTCAGCTGTTATTTCCTTGAGTAAATTTTTTCACACTTGCGTTTT TTTGATAATTACTTTTAAAACTATCTGAAGAGAATGTTTTGGGGAAAAGCTTTTGAACCT AATGTAAACTGCTGAGAAATAATAGCTTAATAATGTAAGTAAAATGTTAATTTATAGACA TACCTCATATCATTGCATTTCGCAAATACTACGGTTTTTGCTTTGTTTACAAATTGAACG TTTGTGTCAATCCTGTGTCCATCAGAAGTCTGTCGGCCCTGTTTTTCCAACAGCATCTGC TCACTTAATGTCTGTGTCACATTGTAGTAATTTCAGCAATATGTCAAACTTTTTCATTAT TATTTATCATGGTGATTGTGATCTTTGATGTTACTATTACAAAAAAAAATATGACTCAAA TGAAGACTTAGAGAATGGTTAGCATTTTTTAGCAATAAAGTATTTTTAAATTAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 490-608, - strand, RNAz p=0.88577 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 490-608, - strand, RNAz p=0.88577 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-314, gnl|bosTau2|chrX (17809838-17810155) | |
| 1-314, gnl|Hg17|chrX (100469118-100468843) | |
| 1-314, gnl|Mm7|chrX (129320224-129319951) | |
| 490-669, gnl|bosTau2|chrX (17815588-17815767) | |
| 490-669, gnl|Hg17|chrX (100462942-100462763) | |
| 490-669, gnl|Mm7|chrX (129314570-129314391) | |
| 752-921, gnl|bosTau2|chrX (17817830-17818000) | |
| 752-921, gnl|Hg17|chrX (100460088-100459918) | |
| 752-921, gnl|Mm7|chrX (129311447-129311278) | |
| 1118-1385, gnl|bosTau2|chrX (17819034-17819301) | |
| 1118-1385, gnl|canFam2|chrX (78377751-78378050) | |
| 1118-1385, gnl|danRer3|chr14 (64326335-64326617) | |
| 1118-1385, gnl|dasNov1|scaffold_23293 (20666-20956) | |
| 1118-1385, gnl|echTel1|scaffold_292907 (10052-10343) | |
| 1118-1385, gnl|fr1|chrUn (70732980-70732730) | |
| 1118-1385, gnl|galGal2|chr4 (1861960-1861684) | |
| 1118-1385, gnl|hg17|chrX (100458972-100459254) | |
| 1118-1385, gnl|Hg17|chrX (100459234-100458971) | |
| 1118-1385, gnl|loxAfr1|scaffold_6090 (1527-1237) | |
| 1118-1385, gnl|mm7|chrX (129309081-129309366) | |
| 1118-1385, gnl|Mm7|chrX (129309342-129309085) | |
| 1118-1385, gnl|monDom2|scaffold_146 (1450944-1450673) | |
| 1118-1385, gnl|oryCun1|scaffold_173277 (12619-12904) | |
| 1118-1385, gnl|panTro1|chrX (103713827-103714109) | |
| 1118-1385, gnl|rheMac2|chrX (100115798-100116084) | |
| 1118-1385, gnl|rn3|chrX (122119206-122119491) | |
| 1118-1385, gnl|tetNig1|chr1 (4847596-4847340) | |
| 1118-1385, gnl|xenTro1|scaffold_561 (637859-637586) | |
| 1710-2064, gnl|bosTau2|chrX (17821970-17822328) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-314, gnl|bosTau2|chrX (17809838-17810155) | |
| 1-314, gnl|Hg17|chrX (100469118-100468843) | |
| 1-314, gnl|Mm7|chrX (129320224-129319951) | |
| 490-669, gnl|bosTau2|chrX (17815588-17815767) | |
| 490-669, gnl|Hg17|chrX (100462942-100462763) | |
| 490-669, gnl|Mm7|chrX (129314570-129314391) | |
| 752-921, gnl|bosTau2|chrX (17817830-17818000) | |
| 752-921, gnl|Hg17|chrX (100460088-100459918) | |
| 752-921, gnl|Mm7|chrX (129311447-129311278) | |
| 1118-1385, gnl|bosTau2|chrX (17819034-17819301) | |
| 1118-1385, gnl|canFam2|chrX (78377751-78378050) | |
| 1118-1385, gnl|danRer3|chr14 (64326335-64326617) | |
| 1118-1385, gnl|dasNov1|scaffold_23293 (20666-20956) | |
| 1118-1385, gnl|echTel1|scaffold_292907 (10052-10343) | |
| 1118-1385, gnl|fr1|chrUn (70732980-70732730) | |
| 1118-1385, gnl|galGal2|chr4 (1861960-1861684) | |
| 1118-1385, gnl|hg17|chrX (100458972-100459254) | |
| 1118-1385, gnl|Hg17|chrX (100459234-100458971) | |
| 1118-1385, gnl|loxAfr1|scaffold_6090 (1527-1237) | |
| 1118-1385, gnl|mm7|chrX (129309081-129309366) | |
| 1118-1385, gnl|Mm7|chrX (129309342-129309085) | |
| 1118-1385, gnl|monDom2|scaffold_146 (1450944-1450673) | |
| 1118-1385, gnl|oryCun1|scaffold_173277 (12619-12904) | |
| 1118-1385, gnl|panTro1|chrX (103713827-103714109) | |
| 1118-1385, gnl|rheMac2|chrX (100115798-100116084) | |
| 1118-1385, gnl|rn3|chrX (122119206-122119491) | |
| 1118-1385, gnl|tetNig1|chr1 (4847596-4847340) | |
| 1118-1385, gnl|xenTro1|scaffold_561 (637859-637586) | |
| 1710-2064, gnl|bosTau2|chrX (17821970-17822328) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| nje (0.49776) | |
| cbe (0.478469) | |
| sug (0.381874) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| pan (0.23596) | |
| ece (0.229305) | |
| tes (0.207814) | |
| eje (0.197668) | |
| sag (0.182715) | |
| rec (0.17307) | |
| cje (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.49776) | |
| cbe (0.478469) | |
| sug (0.381874) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| pan (0.23596) | |
| ece (0.229305) | |
| tes (0.207814) | |
| eje (0.197668) | |
| sag (0.182715) | |
| rec (0.17307) | |
| cje (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |