Non-Coding RNA Search

Ss1.1-Lng1-LNG010002G08.5

Sequence:


               
               ATGCAAATCAGGAAGACAGCGTGCGATTGGCAAGCACTGCACAGGGCAGGCATCCGTGGC
GCGGCAATCACTTGCGATTGGTCGGCATGGGATGGGCGGCCGGTGCGCCGGTTCCCGGGT
CCCAGCGGACGATGGCGTCTGGTGGCTGGCGCTGGCTCCGCAGCCTGTTGGCCGCGGGGC
AGCCTCTGTTCCAAGGCCGTGCGCTGCTCGTCACCAACACGCTGGGCTGCGGCGCTCTCA
TGGCGGCCGGAGACGGCGTGCGCCAGTCCTGGGAGATCCGCGCCCGGCCGGGCCAGAAGT
TCGACCCTCGGCGTTCAGCGAGCATGTTTGCGGTGGGCTGCAGCATGGGCCCCTTCCTGC
ACTACTGGTACCTCTGGCTGGACCGCCTGCTCCCTGCATCCGGCTTCCGTGGCCTCCCAA
ACGTCCTCCGGAAGGTCCTCGTCGACCAAGTAGTGGCCTCTCCCATGCTGGGCGTCTGGT
ATTTCTTGGGCCTTGGATGCCTGGAGGGCCAGACCCTGGATGAGAGTTGCCAGGAGCTAC
GGGACAAGTTCTGGGAATTCTACAAGGCTGACTGGTGCGTGTGGCCTGCTGCGCAGCTGG
TGAATTTCCTCTTCGTGCCCCCCCAGTTCCGAGTCACCTATATCAACGGCCTGACGCTGG
GCTGGGACACGTACCTCTCCTATCTGAAATACCGGGTCCCAAGCCCCCTGACGCCCCCAG
GCTGTGTGGTCCTGGGCACCGTGCAGACTGAGCTGCCCCCTACCCCCACCAGATGCCAGA
CAGGGCAAGACTGACCCTCAGCTGACCCACCACCTGGGAAGGAAGGGGAACAGGCTCCTG
GGCCAAGTCTTAACCCAGTCCTGATTCCCAGGCATCTGGTTGGGCTGCCCCTTCCAAGCC
CACTGCCAGGCCTCAGTTTGGGGAATCTGGAACACAGCCATGAAGATGAACAGTCATCCC
CCAGCCCTTGCCAGGGAGCCTCAAGTGACTGGTGACAGATGTTCCATCCTCAGCACTGGG
CCCCAGCCAGCCAGCCAGTGCCAAGCCCTCAACACTACTGTGGACTGGGTTCTGTGATCA
AGGTGGGGACATCACCCATCCCCTTAGAGCAGGACCCAGCCTGGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCAAATCAGGAAGACAGCGTGCGATTGGCAAGCACTGCACAGGGCAGGCATCCGTGGC
GCGGCAATCACTTGCGATTGGTCGGCATGGGATGGGCGGCCGGTGCGCCGGTTCCCGGGT
CCCAGCGGACGATGGCGTCTGGTGGCTGGCGCTGGCTCCGCAGCCTGTTGGCCGCGGGGC
AGCCTCTGTTCCAAGGCCGTGCGCTGCTCGTCACCAACACGCTGGGCTGCGGCGCTCTCA
TGGCGGCCGGAGACGGCGTGCGCCAGTCCTGGGAGATCCGCGCCCGGCCGGGCCAGAAGT
TCGACCCTCGGCGTTCAGCGAGCATGTTTGCGGTGGGCTGCAGCATGGGCCCCTTCCTGC
ACTACTGGTACCTCTGGCTGGACCGCCTGCTCCCTGCATCCGGCTTCCGTGGCCTCCCAA
ACGTCCTCCGGAAGGTCCTCGTCGACCAAGTAGTGGCCTCTCCCATGCTGGGCGTCTGGT
ATTTCTTGGGCCTTGGATGCCTGGAGGGCCAGACCCTGGATGAGAGTTGCCAGGAGCTAC
GGGACAAGTTCTGGGAATTCTACAAGGCTGACTGGTGCGTGTGGCCTGCTGCGCAGCTGG
TGAATTTCCTCTTCGTGCCCCCCCAGTTCCGAGTCACCTATATCAACGGCCTGACGCTGG
GCTGGGACACGTACCTCTCCTATCTGAAATACCGGGTCCCAAGCCCCCTGACGCCCCCAG
GCTGTGTGGTCCTGGGCACCGTGCAGACTGAGCTGCCCCCTACCCCCACCAGATGCCAGA
CAGGGCAAGACTGACCCTCAGCTGACCCACCACCTGGGAAGGAAGGGGAACAGGCTCCTG
GGCCAAGTCTTAACCCAGTCCTGATTCCCAGGCATCTGGTTGGGCTGCCCCTTCCAAGCC
CACTGCCAGGCCTCAGTTTGGGGAATCTGGAACACAGCCATGAAGATGAACAGTCATCCC
CCAGCCCTTGCCAGGGAGCCTCAAGTGACTGGTGACAGATGTTCCATCCTCAGCACTGGG
CCCCAGCCAGCCAGCCAGTGCCAAGCCCTCAACACTACTGTGGACTGGGTTCTGTGATCA
AGGTGGGGACATCACCCATCCCCTTAGAGCAGGACCCAGCCTGGACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62202450|gb|AAH93008.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62202450|gb|AAH93008.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               128-221, - strand, RNAz p=0.657411

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-221, - strand, RNAz p=0.657411

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               128-1117, gnl|bosTau2|chr1 (64447734-64446754)
               

               
               128-1117, gnl|Hg17|chr19 (18165088-18168300)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-1117, gnl|bosTau2|chr1 (64447734-64446754)
               

               
               128-1117, gnl|Hg17|chr19 (18165088-18168300)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbr (0.255951)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.255951)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	128-1117, gnl\|bosTau2\|chr1 (64447734-64446754)
	128-1117, gnl\|Hg17\|chr19 (18165088-18168300)

	cbr (0.255951)
	eje (0.197668)
	nep (0.183925)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	cli (0.152812)
	hyp (0.142837)
	pty (0.142714)
	cov (0.132153)
	pgl (0.118483)
	jej (0.0989218)