Non-Coding RNA Search

Ss1.1-Lng1-LNG010003A06.5.5

Sequence:


               
               CCGGGGTGGTGAGCGCGGCCCCTACCCAGCACTCGCAAAGGAGGGTCGCAAAGCCGCGGG
CGTTCCCGGAGGTAGTTGTTGCGAACCTGGCAGTTGAGGGCATCATGGTAGGCTTGAAGA
GGAAACACTCAGATTTGGAGGAGGAAGAAGAGGATGAGAAGTGGGACTGGAGTCCCACAG
GCCTTCGGAGCTACCAGCAAGCCCTGCTCCGCATCTCCCTAGACAAAGTCCAGCGAAGCC
TGGGCCCCCGAGCACCCAGCCTTCGAAGGCATGTCCTCATCCACAACACCCTCCAACAAC
TCCAAGCAGCGCTTTGCCTGACGCCTGCACCTGCCCTGCCCCCCGAGCCCCTCTTCCTGG
GCGAGGAGGACTTCTCCCTGTCGACCACCATCGGCTCTATTCTCAGGGAGCTGGAGACCT
CCATGGATGAGACTGAGCCCCCTCCCAATCCAGTGGCTCCCCCAGGTCCCCAGAATGAAG
TATTGCCCCAGCCCGATCCGGTCTTCTTAGAAGCTCTGAGCTCCCGGTACCTAGGGGACT
CCGGCCTGGATGACTTCTTCCTGGACATTGACACATCGGCAGTGGAGAAGGAGCCTGCAC
TGACCCCACCCGAGCCTCCTCACAACCTCTTCTGTGCCCCAGGTTCCTGGGAGTGGAATG
AACTAGATCACATCATGGAAATCATTCTGGGATCCTAAAACTTTGATGGGGAGGGGGCGC
TCCTTCCCCATCTCAGCCTTGGTGGGCTGAAATCCCTGGATGCAACTCTGTGTGTGTGTG
TTTATATGGAGGCTTTAAGCAGTAACTGTGGCCTCCTTTGCTCCCATTTCAGGGTTCCAC
AAACTGTCTTGCATGTGTGTGTGTGTCTGGTTATCGCAGCCTTCTGTGAAGGTGGGTCTT
CCTGAATTAATTTATCTGTTGCAAATGCCTTAATGAGACTCTGTTTCTGGGAGTCTGATT
TCCCACGTCCACATTTCTTCTGCCTTTCCCTCCAGTTCCTACTCCCCTCGTGTCCCCTGG
GGCCTCAGGGAAGATAAGCTGGGCCTGTCAAAGGATGACAGGGAGGTGCTGCCTGGTTGC
TATGGAAACCCAGCTTCTGCCTCTTGCACCTCTAGGGAATGGGAGGGGCTGGCCTCCTCC
CCAGGCTGAACCCCACCTCCTTCATAGGACCCCAGTCCCAGCAGCCTCCTGATTCATGAC
CAGGCCGGACCACGTGCAATAGGGTGGAAACCAAACTGCTCCATGCCGCATTATTTAATA
GAAAGGCAGGTTTTGTGGTGGGTTTTTTTGTTTTGTTTTCTGATTGTAATTTTTTTTTTT
TTAATAAAAGTATTTTGGAAGGGGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGGTGGTGAGCGCGGCCCCTACCCAGCACTCGCAAAGGAGGGTCGCAAAGCCGCGGG
CGTTCCCGGAGGTAGTTGTTGCGAACCTGGCAGTTGAGGGCATCATGGTAGGCTTGAAGA
GGAAACACTCAGATTTGGAGGAGGAAGAAGAGGATGAGAAGTGGGACTGGAGTCCCACAG
GCCTTCGGAGCTACCAGCAAGCCCTGCTCCGCATCTCCCTAGACAAAGTCCAGCGAAGCC
TGGGCCCCCGAGCACCCAGCCTTCGAAGGCATGTCCTCATCCACAACACCCTCCAACAAC
TCCAAGCAGCGCTTTGCCTGACGCCTGCACCTGCCCTGCCCCCCGAGCCCCTCTTCCTGG
GCGAGGAGGACTTCTCCCTGTCGACCACCATCGGCTCTATTCTCAGGGAGCTGGAGACCT
CCATGGATGAGACTGAGCCCCCTCCCAATCCAGTGGCTCCCCCAGGTCCCCAGAATGAAG
TATTGCCCCAGCCCGATCCGGTCTTCTTAGAAGCTCTGAGCTCCCGGTACCTAGGGGACT
CCGGCCTGGATGACTTCTTCCTGGACATTGACACATCGGCAGTGGAGAAGGAGCCTGCAC
TGACCCCACCCGAGCCTCCTCACAACCTCTTCTGTGCCCCAGGTTCCTGGGAGTGGAATG
AACTAGATCACATCATGGAAATCATTCTGGGATCCTAAAACTTTGATGGGGAGGGGGCGC
TCCTTCCCCATCTCAGCCTTGGTGGGCTGAAATCCCTGGATGCAACTCTGTGTGTGTGTG
TTTATATGGAGGCTTTAAGCAGTAACTGTGGCCTCCTTTGCTCCCATTTCAGGGTTCCAC
AAACTGTCTTGCATGTGTGTGTGTGTCTGGTTATCGCAGCCTTCTGTGAAGGTGGGTCTT
CCTGAATTAATTTATCTGTTGCAAATGCCTTAATGAGACTCTGTTTCTGGGAGTCTGATT
TCCCACGTCCACATTTCTTCTGCCTTTCCCTCCAGTTCCTACTCCCCTCGTGTCCCCTGG
GGCCTCAGGGAAGATAAGCTGGGCCTGTCAAAGGATGACAGGGAGGTGCTGCCTGGTTGC
TATGGAAACCCAGCTTCTGCCTCTTGCACCTCTAGGGAATGGGAGGGGCTGGCCTCCTCC
CCAGGCTGAACCCCACCTCCTTCATAGGACCCCAGTCCCAGCAGCCTCCTGATTCATGAC
CAGGCCGGACCACGTGCAATAGGGTGGAAACCAAACTGCTCCATGCCGCATTATTTAATA
GAAAGGCAGGTTTTGTGGTGGGTTTTTTTGTTTTGTTTTCTGATTGTAATTTTTTTTTTT
TTAATAAAAGTATTTTGGAAGGGGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BK27_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BK27_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               97-413, - strand, RNAz p=0.945244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-413, - strand, RNAz p=0.945244

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               97-1344, gnl|bosTau2|chr18 (41482591-41481335)
               

               
               97-1344, gnl|Hg17|chr19 (45639835-45638591)
               

               
               97-1344, gnl|Mm7|chr7 (24396360-24397587)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-1344, gnl|bosTau2|chr18 (41482591-41481335)
               

               
               97-1344, gnl|Hg17|chr19 (45639835-45638591)
               

               
               97-1344, gnl|Mm7|chr7 (24396360-24397587)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               amn (0.417711)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

	97-1344, gnl\|bosTau2\|chr18 (41482591-41481335)
	97-1344, gnl\|Hg17\|chr19 (45639835-45638591)
	97-1344, gnl\|Mm7\|chr7 (24396360-24397587)

	amn (0.417711)
	cov (0.264306)
	mas (0.210305)
	tes (0.207814)
	eje (0.197668)
	nep (0.183925)
	fty (0.17584)
	sin (0.174948)
	csp (0.161186)
	cag (0.151194)
	ssp (0.13552)
	ute (0.132784)
	cty (0.10408)