Non-Coding RNA Search

Ss1.1-Lng1-LNG010003B05.5

Sequence:


               
               TGACATCACTGCTAACCGGGCGGCCCGCTGGGGTGCACCTGGGCCTACAGCCCTCCACAG
GCCAGTTCTTCGCATCTCTGGATCCCATTAACGAGGCTTCTGCCATCCTGAGTCCCTTAA
GCTCGAACCCAAGAAATTCAGTTCAGCATCAGTTTCAAGACACATTTCCAGGTCCCTATG
CCGTGCTCACGAAGGACACCATGCCGCAGACCTACAAGAGGAAGCGCTCGTGGTCCAGGG
CGGTCTTCTCCAACCTGCAGAGGAAAGGCCTGGAGAAAAGATTTGAGATTCAGAAGTACG
TGACCAAGCCAGACCGAAAGCAGCTGGCGGCCATGCTCGGTCTCACCGACGCACAGGTGA
AGGTGTGGTTCCAAAACCGGCGGATGAAGTGGCGGCACTCCAAGGAGGCCCAGGCCCAGA
AGGACAAAGACAAGGAGGCCGGCGAGAAGCCCTCAGGCGGAGCTGTGGCCGCAGACGGCG
AGCCCGAGGAGCGGAGCCCCAGCCGTTCAGAGGCCGAGGCTGAGAGCGAGAGCAGCGACT
CCGAGTCTCTGGACATGACCCCCAGCGACACGGAGCGGACTGAAGGGGCCGATCGGTCCT
TGCACCCAACGACGGTCATCAAGGCCTCCGCGGCGGGCGCCCTCCTGGCCGCCAGCAGCG
GCGGCAGTGGGGGAAGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGTGGTTTTAGCT
TCGGCGGCCTCAGTAGCAGCAGCACCGGCGCCGGGAGCAGCGGCGGCAGCGGCGCCTCGG
AGCTGCTCCCCGCGCCCCAGCCCGCCCTCGGCAGCGCCCCCAAAAGCCCCGAGTCCACCC
AGGCGCCGCTGGGTGGCCTCTAGACTGGACAAGGTTGGAGGGGACGCGAGGCCCCGGCGC
AGGCTCGCAGCCTTGCAGTGTGGGATGGATTTTGTGCCTGCTTTCTGGTGGCAGCAGGGC
CAGGGCCGGAGACGCGAGGGCAGAGCCCTAATGGAGGGCACGCATCGCTGTCCCAGGCCT
GCAGCCCACCCCTCACGGAGCCGAGGGGAGTCGAGCGCGCCCAGCACCGGGCTCCCAGCT
CCATCCGCACACCTCGGCCTGGATACAAGCAGCTCCCACTGTGAAGCGTTGGACTGAGCA
GTCCTCCCCTCGCTAGGGGTCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACATCACTGCTAACCGGGCGGCCCGCTGGGGTGCACCTGGGCCTACAGCCCTCCACAG
GCCAGTTCTTCGCATCTCTGGATCCCATTAACGAGGCTTCTGCCATCCTGAGTCCCTTAA
GCTCGAACCCAAGAAATTCAGTTCAGCATCAGTTTCAAGACACATTTCCAGGTCCCTATG
CCGTGCTCACGAAGGACACCATGCCGCAGACCTACAAGAGGAAGCGCTCGTGGTCCAGGG
CGGTCTTCTCCAACCTGCAGAGGAAAGGCCTGGAGAAAAGATTTGAGATTCAGAAGTACG
TGACCAAGCCAGACCGAAAGCAGCTGGCGGCCATGCTCGGTCTCACCGACGCACAGGTGA
AGGTGTGGTTCCAAAACCGGCGGATGAAGTGGCGGCACTCCAAGGAGGCCCAGGCCCAGA
AGGACAAAGACAAGGAGGCCGGCGAGAAGCCCTCAGGCGGAGCTGTGGCCGCAGACGGCG
AGCCCGAGGAGCGGAGCCCCAGCCGTTCAGAGGCCGAGGCTGAGAGCGAGAGCAGCGACT
CCGAGTCTCTGGACATGACCCCCAGCGACACGGAGCGGACTGAAGGGGCCGATCGGTCCT
TGCACCCAACGACGGTCATCAAGGCCTCCGCGGCGGGCGCCCTCCTGGCCGCCAGCAGCG
GCGGCAGTGGGGGAAGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGTGGTTTTAGCT
TCGGCGGCCTCAGTAGCAGCAGCACCGGCGCCGGGAGCAGCGGCGGCAGCGGCGCCTCGG
AGCTGCTCCCCGCGCCCCAGCCCGCCCTCGGCAGCGCCCCCAAAAGCCCCGAGTCCACCC
AGGCGCCGCTGGGTGGCCTCTAGACTGGACAAGGTTGGAGGGGACGCGAGGCCCCGGCGC
AGGCTCGCAGCCTTGCAGTGTGGGATGGATTTTGTGCCTGCTTTCTGGTGGCAGCAGGGC
CAGGGCCGGAGACGCGAGGGCAGAGCCCTAATGGAGGGCACGCATCGCTGTCCCAGGCCT
GCAGCCCACCCCTCACGGAGCCGAGGGGAGTCGAGCGCGCCCAGCACCGGGCTCCCAGCT
CCATCCGCACACCTCGGCCTGGATACAAGCAGCTCCCACTGTGAAGCGTTGGACTGAGCA
GTCCTCCCCTCGCTAGGGGTCGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5VVT2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5VVT2_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-173, gnl|bosTau2|chr16 (10545065-10544889)
               

               
               3-173, gnl|Hg17|chr1 (217442936-217443112)
               

               
               3-173, gnl|Mm7|chr1 (184256477-184256301)
               


               
               354-1088, gnl|bosTau2|chr16 (10542114-10541396)
               

               
               354-1088, gnl|Hg17|chr1 (217445929-217446647)
               

               
               354-1088, gnl|Mm7|chr1 (184253606-184252910)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-173, gnl|bosTau2|chr16 (10545065-10544889)
               

               
               3-173, gnl|Hg17|chr1 (217442936-217443112)
               

               
               3-173, gnl|Mm7|chr1 (184256477-184256301)
               


               
               354-1088, gnl|bosTau2|chr16 (10542114-10541396)
               

               
               354-1088, gnl|Hg17|chr1 (217445929-217446647)
               

               
               354-1088, gnl|Mm7|chr1 (184253606-184252910)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	3-173, gnl\|bosTau2\|chr16 (10545065-10544889)
	3-173, gnl\|Hg17\|chr1 (217442936-217443112)
	3-173, gnl\|Mm7\|chr1 (184256477-184256301)

	354-1088, gnl\|bosTau2\|chr16 (10542114-10541396)
	354-1088, gnl\|Hg17\|chr1 (217445929-217446647)
	354-1088, gnl\|Mm7\|chr1 (184253606-184252910)