Ss1.1-Lng1-LNG010003F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCGGGCGCCGCTCTGGCCGTCGTGTGTCCGCACCGCCACCTGGGCCGCGGAGCAGGCA GGCAGGAGACAGAGGCCCAGGAGCCATGGGCGACTGGGGCTTCCTTGAGAAGCTGCTGGA CCAGGTCCAGGAGCACTCGACCGTGGTGGGCAAGATCTGGCTGACGGTCCTGTTCATCTT CCGCATCCTCATCCTGGGCCTGGCGGGCGAGTCGGTGTGGGGCGATGAGCAGTCGGACTT CGAGTGTAACACTGCCCAGCCAGGCTGCACCAACGTGTGCTACGACCAGGCCTTCCCCAT CTCCCACATCCGCTACTGGGTGCTGCAGTTCCTCTTCGTCAGCACGCCCACCCTGGTCTA CCTGGGCCACGTCATTTACCTGTCTCGGCGCGAGGAGCGGCTGCGGCAGAAGGAAGGGGA GCTGCGGGCGCTGCCAGCCAAGGACCCACGTGTGGAACGGGCGCTGGCAGCCATAGAGCG ACAGATGGCCAAGATCTCAGTGGCCGAGGATGGTCACCTGCGAATCCGAGGGGCCCTGAT GGGCACCTATGTGGCCAGCGTGCTCTGCAAGAGTGTGCTAGAGGCAGGCTTCCTGTATGG CCAGTGGCGTCTCTATGGCTGGACCATGGAGCCCGTGTTTGTGTGCCAGCGCTCACCCTG TCCCTACCTCGTAGACTGCTTCGTCTCACGCCCCACAGAGAAGACCATTTTCATCATCTT CATGCTGGTGGTCGGACTCATCTCCCTGGTGCTCAACCTGCTGGAGCTGGCGTACCTGCT GTGCCGCTGCCTCAGCCGGGGCATCAGGGCCCGGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCGGGCGCCGCTCTGGCCGTCGTGTGTCCGCACCGCCACCTGGGCCGCGGAGCAGGCA GGCAGGAGACAGAGGCCCAGGAGCCATGGGCGACTGGGGCTTCCTTGAGAAGCTGCTGGA CCAGGTCCAGGAGCACTCGACCGTGGTGGGCAAGATCTGGCTGACGGTCCTGTTCATCTT CCGCATCCTCATCCTGGGCCTGGCGGGCGAGTCGGTGTGGGGCGATGAGCAGTCGGACTT CGAGTGTAACACTGCCCAGCCAGGCTGCACCAACGTGTGCTACGACCAGGCCTTCCCCAT CTCCCACATCCGCTACTGGGTGCTGCAGTTCCTCTTCGTCAGCACGCCCACCCTGGTCTA CCTGGGCCACGTCATTTACCTGTCTCGGCGCGAGGAGCGGCTGCGGCAGAAGGAAGGGGA GCTGCGGGCGCTGCCAGCCAAGGACCCACGTGTGGAACGGGCGCTGGCAGCCATAGAGCG ACAGATGGCCAAGATCTCAGTGGCCGAGGATGGTCACCTGCGAATCCGAGGGGCCCTGAT GGGCACCTATGTGGCCAGCGTGCTCTGCAAGAGTGTGCTAGAGGCAGGCTTCCTGTATGG CCAGTGGCGTCTCTATGGCTGGACCATGGAGCCCGTGTTTGTGTGCCAGCGCTCACCCTG TCCCTACCTCGTAGACTGCTTCGTCTCACGCCCCACAGAGAAGACCATTTTCATCATCTT CATGCTGGTGGTCGGACTCATCTCCCTGGTGCTCAACCTGCTGGAGCTGGCGTACCTGCT GTGCCGCTGCCTCAGCCGGGGCATCAGGGCCCGGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 191-310, - strand, RNAz p=0.506714 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 191-310, - strand, RNAz p=0.506714 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 67-814, gnl|bosTau2|chr3 (78120738-78119991) | |
| 67-814, gnl|Hg17|chr1 (34928889-34929636) | |
| 67-814, gnl|Mm7|chr4 (126757634-126756887) | |
| 82-425, gnl|bosTau2|chr12 (20723549-20723206) | |
| 82-425, gnl|Hg17|chr13 (19615431-19615085) | |
| 82-425, gnl|Mm7|chr14 (51904636-51904293) | |
| 151-350, gnl|bosTau2|chr10 (19122798-19122599) | |
| 151-350, gnl|canFam2|chr30 (5468398-5468662) | |
| 151-350, gnl|danRer3|chr14 (32898500-32898242) | |
| 151-350, gnl|dasNov1|scaffold_12911 (7735-7471) | |
| 151-350, gnl|echTel1|scaffold_267489 (9676-9399) | |
| 151-350, gnl|fr1|chrUn (63301881-63302128) | |
| 151-350, gnl|galGal2|chr5 (29166960-29166696) | |
| 151-350, gnl|hg17|chr15 (32832627-32832891) | |
| 151-350, gnl|Hg17|chr15 (32832868-32832669) | |
| 151-350, gnl|loxAfr1|scaffold_7781 (65894-66157) | |
| 151-350, gnl|mm7|chr2 (113752525-113752791) | |
| 151-350, gnl|Mm7|chr2 (113752766-113752567) | |
| 151-350, gnl|monDom2|scaffold_12 (9619383-9619116) | |
| 151-350, gnl|oryCun1|scaffold_205165 (22964-22722) | |
| 151-350, gnl|panTro1|chr16 (32613574-32613838) | |
| 151-350, gnl|rheMac2|chr7 (13087652-13087916) | |
| 151-350, gnl|rn3|chr3 (99758994-99759259) | |
| 151-350, gnl|tetNig1|chr10 (7901017-7900773) | |
| 151-350, gnl|xenTro1|scaffold_199 (730670-730413) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-814, gnl|bosTau2|chr3 (78120738-78119991) | |
| 67-814, gnl|Hg17|chr1 (34928889-34929636) | |
| 67-814, gnl|Mm7|chr4 (126757634-126756887) | |
| 82-425, gnl|bosTau2|chr12 (20723549-20723206) | |
| 82-425, gnl|Hg17|chr13 (19615431-19615085) | |
| 82-425, gnl|Mm7|chr14 (51904636-51904293) | |
| 151-350, gnl|bosTau2|chr10 (19122798-19122599) | |
| 151-350, gnl|canFam2|chr30 (5468398-5468662) | |
| 151-350, gnl|danRer3|chr14 (32898500-32898242) | |
| 151-350, gnl|dasNov1|scaffold_12911 (7735-7471) | |
| 151-350, gnl|echTel1|scaffold_267489 (9676-9399) | |
| 151-350, gnl|fr1|chrUn (63301881-63302128) | |
| 151-350, gnl|galGal2|chr5 (29166960-29166696) | |
| 151-350, gnl|hg17|chr15 (32832627-32832891) | |
| 151-350, gnl|Hg17|chr15 (32832868-32832669) | |
| 151-350, gnl|loxAfr1|scaffold_7781 (65894-66157) | |
| 151-350, gnl|mm7|chr2 (113752525-113752791) | |
| 151-350, gnl|Mm7|chr2 (113752766-113752567) | |
| 151-350, gnl|monDom2|scaffold_12 (9619383-9619116) | |
| 151-350, gnl|oryCun1|scaffold_205165 (22964-22722) | |
| 151-350, gnl|panTro1|chr16 (32613574-32613838) | |
| 151-350, gnl|rheMac2|chr7 (13087652-13087916) | |
| 151-350, gnl|rn3|chr3 (99758994-99759259) | |
| 151-350, gnl|tetNig1|chr10 (7901017-7900773) | |
| 151-350, gnl|xenTro1|scaffold_199 (730670-730413) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) |