Non-Coding RNA Search

Ss1.1-Lng1-LNG010004B10.5

Sequence:


               
               TTTGCATAATCTAGCATTTACAGCTAAAATACATTTTTATAAGAACTGGCATCTTGATGT
ATATAGATCTGAAACAATACTTAATCATTTGGGGTTTTTTTATTTAAATGAATAAGACCA
TGATAGATTTTTTTTTAATTTTACTTTTAAGTCATTGCAGTGTGCTATTATTATCTGTTC
CAGTACTCTTAGCCACTTTGGTTTTTATTTATTTACGATACCATATCAAGAACTTGTTAA
TGTTAAAAAGTACTATATGTGACAGAACAAACCAGAACAGTTCCTGGATCGGGGAGGGTT
CGGGTTAGCAGTTACTGAGAGGGCAAGATGGATTGGACTTTGTGCTTTGAAGAGGTCTTG
GTTTTATGAGGTGCTGGTCATATAAGTTGTTTATTTTTATTTCGTCAAAGCCTGGCAGGT
GTTTGCATTCCAATTTACCACTGGGAAAGGCTTACAAGGAAGCTGCTTTTTTAAAAATTA
TTTTTAACGTTGGTTGATGAATTCATTCTGTGGAAAAATGAGATTTATAAATATTAGTTT
TCCTTTGAGATAAAATCATATAAACCAAACCTTCAGAAATTAAGGATGATGAATAATATT
ACAATTTGTCATATACTGTGTTTGTAAGGGTTCCCTCAAGTATTAAAATTCAGGTAATAT
GTGTAAATTGCAAAAGCAGAAACTGTGATGTTTTGGGTAGTATGTCAGTTAACATTCTTT
TCGAGGTGTATGTTATACATACAGTAAACTACTATTCAGCCTTGCTTATCCTGCATTTTT
TTAAAATAAATACAGCATCCCAGGTCACCATTAGATCTGTTAGCCTAGGAAGACTTCATC
TGGCTCTCCTCAGATGACCTCTCCTAAGCCCTCTTCATCACCTGTGTTCGGTTAAGGTGG
CAGTGTGTGTGGACTGTGTGTAAAATACGGACTTCGTGTTGTACCCTTTCAACGGCCATT
GGCAGTAGCCAAAGCCAGCCTCCTAGCCCATGTCCTGCCATGAGGAACTGTGGTGCTGTC
AGTGTGTGTGCCTGTGCGTGTGTGTTCCCGCTTTGATGATTTTTCTTAAGCTACTGAATG
GATACACGCGAGGGGTTGAGTCTGCACTAAAACTATGATGCGACGTTTCCTGTCTACCTG
TCTGTGTCCCTGCCTCTTCAATCTGGGGGTTTTTAAAAATTACTTCTCACTTCCTTGCCA
AGATCATATAATGAGTTAATGGTGAGTGGGATTAAACAAAACTAAAAACATTTGCATATC
CCTCCCCACCTCACACACTGAAAGCTCTGGAGGAGCTAGACCATTTGCTGTTGCCAAGAC
ATGCTTAGATCCCGAAGTTTTCTTTACTCATCCGTCTCACTCACCACCAAGTTTGGGAGA
GTCCCGACCTCAACGTCTAGGAGAGGTTGAGGTGAACGCTCCTCTTGCCCGGCTTTTACA
GCAGCTTGTGTTCCTCACCGACAGCACTCGTTTTCACACCTACTGGTGGAAACTTCCTTA
GCACAGGGATCATGTCTGGGTGATTTTAGTATTTCCACCTCAATCCCGGCAGCTAGCCCA
GTGTCTGGAACAAAGTCAGTGCTTCATGTCCATTGAAGTAGATGGAATAAGGGGTTTCTA
CTCTAGCATCAGCATCTCTCAGGCCTCAGTTGTGTAAGGCGGTAGGTTGTTTGGTTTCCT
CTGCAAACAATTATGATTATCACCCTACACTCTGTAGATGATTTTTAAAACTTTGCTTTC
TTCCCTTCAGATGCTACCCCACGGCCAATTAGCTCTAGAAAATGCGGTTACCTCTGATGA
AATGATTACCCCCATTCTACCCCGATATACTTTGCCAAATTGGAATTTGAATTTTCTGAA
TAAACTGGTCATGTCTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCATAATCTAGCATTTACAGCTAAAATACATTTTTATAAGAACTGGCATCTTGATGT
ATATAGATCTGAAACAATACTTAATCATTTGGGGTTTTTTTATTTAAATGAATAAGACCA
TGATAGATTTTTTTTTAATTTTACTTTTAAGTCATTGCAGTGTGCTATTATTATCTGTTC
CAGTACTCTTAGCCACTTTGGTTTTTATTTATTTACGATACCATATCAAGAACTTGTTAA
TGTTAAAAAGTACTATATGTGACAGAACAAACCAGAACAGTTCCTGGATCGGGGAGGGTT
CGGGTTAGCAGTTACTGAGAGGGCAAGATGGATTGGACTTTGTGCTTTGAAGAGGTCTTG
GTTTTATGAGGTGCTGGTCATATAAGTTGTTTATTTTTATTTCGTCAAAGCCTGGCAGGT
GTTTGCATTCCAATTTACCACTGGGAAAGGCTTACAAGGAAGCTGCTTTTTTAAAAATTA
TTTTTAACGTTGGTTGATGAATTCATTCTGTGGAAAAATGAGATTTATAAATATTAGTTT
TCCTTTGAGATAAAATCATATAAACCAAACCTTCAGAAATTAAGGATGATGAATAATATT
ACAATTTGTCATATACTGTGTTTGTAAGGGTTCCCTCAAGTATTAAAATTCAGGTAATAT
GTGTAAATTGCAAAAGCAGAAACTGTGATGTTTTGGGTAGTATGTCAGTTAACATTCTTT
TCGAGGTGTATGTTATACATACAGTAAACTACTATTCAGCCTTGCTTATCCTGCATTTTT
TTAAAATAAATACAGCATCCCAGGTCACCATTAGATCTGTTAGCCTAGGAAGACTTCATC
TGGCTCTCCTCAGATGACCTCTCCTAAGCCCTCTTCATCACCTGTGTTCGGTTAAGGTGG
CAGTGTGTGTGGACTGTGTGTAAAATACGGACTTCGTGTTGTACCCTTTCAACGGCCATT
GGCAGTAGCCAAAGCCAGCCTCCTAGCCCATGTCCTGCCATGAGGAACTGTGGTGCTGTC
AGTGTGTGTGCCTGTGCGTGTGTGTTCCCGCTTTGATGATTTTTCTTAAGCTACTGAATG
GATACACGCGAGGGGTTGAGTCTGCACTAAAACTATGATGCGACGTTTCCTGTCTACCTG
TCTGTGTCCCTGCCTCTTCAATCTGGGGGTTTTTAAAAATTACTTCTCACTTCCTTGCCA
AGATCATATAATGAGTTAATGGTGAGTGGGATTAAACAAAACTAAAAACATTTGCATATC
CCTCCCCACCTCACACACTGAAAGCTCTGGAGGAGCTAGACCATTTGCTGTTGCCAAGAC
ATGCTTAGATCCCGAAGTTTTCTTTACTCATCCGTCTCACTCACCACCAAGTTTGGGAGA
GTCCCGACCTCAACGTCTAGGAGAGGTTGAGGTGAACGCTCCTCTTGCCCGGCTTTTACA
GCAGCTTGTGTTCCTCACCGACAGCACTCGTTTTCACACCTACTGGTGGAAACTTCCTTA
GCACAGGGATCATGTCTGGGTGATTTTAGTATTTCCACCTCAATCCCGGCAGCTAGCCCA
GTGTCTGGAACAAAGTCAGTGCTTCATGTCCATTGAAGTAGATGGAATAAGGGGTTTCTA
CTCTAGCATCAGCATCTCTCAGGCCTCAGTTGTGTAAGGCGGTAGGTTGTTTGGTTTCCT
CTGCAAACAATTATGATTATCACCCTACACTCTGTAGATGATTTTTAAAACTTTGCTTTC
TTCCCTTCAGATGCTACCCCACGGCCAATTAGCTCTAGAAAATGCGGTTACCTCTGATGA
AATGATTACCCCCATTCTACCCCGATATACTTTGCCAAATTGGAATTTGAATTTTCTGAA
TAAACTGGTCATGTCTGAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               258-759, gnl|bosTau2|chr5 (5430813-5430321)
               

               
               258-759, gnl|Hg17|chr8 (58034604-58034130)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               258-759, gnl|bosTau2|chr5 (5430813-5430321)
               

               
               258-759, gnl|Hg17|chr8 (58034604-58034130)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               ece (0.687916)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	258-759, gnl\|bosTau2\|chr5 (5430813-5430321)
	258-759, gnl\|Hg17\|chr8 (58034604-58034130)

	ece (0.687916)
	fat (0.294855)
	fce (0.271592)
	pla (0.267344)
	pgl (0.236967)
	isp (0.150376)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)