Non-Coding RNA Search

Ss1.1-Lng1-LNG010005A09.5

Sequence:


               
               GAGAGTTCAGATATGCGAAAAGGCAGAAGAATTAAAGGACATTGTGCCTGAAAAGAAAAG
CACTTTAAATGAACATCAGTCTGATATAAAACATCAGTCTCTTCTCCATAAAAATGTGAA
TAAAAGGGATCCACCCAACAGTCATGGGCATGGTGATAAGAAAAATCTCTTGAAAGCAGA
AAATGGTGTCACGCAAAGAGGTAGATCTGCTAGTCCCAAAAAGTCAGCCAGTCGACACTC
AGAGGAACATTTGGAAAAGATCCCCAGTCCTTTAAAAAATGACCCCAAGAGAAGACCCAG
AGATCGATCACTCAGCCCCAGGAAAGGGGAGAACAAGAGCTGTCAGACTGGACCAGATCA
CTGCAGAAAAGGCAGGGGACGGTCCTCCAGCCCAAAGCAGCAGCCAAAAACCGAAGGCAG
CAAAGACCAGTCAAGCATGAGTCGAAGAGCCGGGGGCCATGCCAGCGACCATGCTGAGCA
GATCGCAGACAGGAAAGAAAGATCAGGCGTCACCAGGAAAGACGCAACCCAGAGTCAGCT
TGGAAAAAGCAGAGCCAGGTCTCCAGAGAAGAAAAGCAAGAGAATGGAGGAAAAGTCTCT
TCCATCCCGAAAGACGAATAACATCTCTAGTAGAGTAGTGTCAGAAAATGACAAAGGAAA
GAAAGCAACCTTAGGAGAAACAAGTTCGAGTAAAGATGAAACAGGAGAAAATGTCAAAAG
AGCAGAAAAGAAGCTGAAGCAGCAACCGGAAGAAAGAATGGTCACAAACAAAATAGAAGA
TCACAAAGGAAAAGAACTAGAGACGGCCGACAAGAACAAGGAGAGCAGAGGGTTCAAACC
TGAAAGCGGTTCTCCAGCTAAGAAAACACCAATAACTCCAGGGCCCTGGAAGGTGCCAAG
TGCAAGCAGAGCCACAGGCACTACGGGTGTGGCCGAGAAGCGGTTGTGACCTTTAGTATA
AAACAAAGAAAAACAAGTTGTAATCTTCCTAAAAAGCAGCATTCACAGCCCTGCCCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGTTCAGATATGCGAAAAGGCAGAAGAATTAAAGGACATTGTGCCTGAAAAGAAAAG
CACTTTAAATGAACATCAGTCTGATATAAAACATCAGTCTCTTCTCCATAAAAATGTGAA
TAAAAGGGATCCACCCAACAGTCATGGGCATGGTGATAAGAAAAATCTCTTGAAAGCAGA
AAATGGTGTCACGCAAAGAGGTAGATCTGCTAGTCCCAAAAAGTCAGCCAGTCGACACTC
AGAGGAACATTTGGAAAAGATCCCCAGTCCTTTAAAAAATGACCCCAAGAGAAGACCCAG
AGATCGATCACTCAGCCCCAGGAAAGGGGAGAACAAGAGCTGTCAGACTGGACCAGATCA
CTGCAGAAAAGGCAGGGGACGGTCCTCCAGCCCAAAGCAGCAGCCAAAAACCGAAGGCAG
CAAAGACCAGTCAAGCATGAGTCGAAGAGCCGGGGGCCATGCCAGCGACCATGCTGAGCA
GATCGCAGACAGGAAAGAAAGATCAGGCGTCACCAGGAAAGACGCAACCCAGAGTCAGCT
TGGAAAAAGCAGAGCCAGGTCTCCAGAGAAGAAAAGCAAGAGAATGGAGGAAAAGTCTCT
TCCATCCCGAAAGACGAATAACATCTCTAGTAGAGTAGTGTCAGAAAATGACAAAGGAAA
GAAAGCAACCTTAGGAGAAACAAGTTCGAGTAAAGATGAAACAGGAGAAAATGTCAAAAG
AGCAGAAAAGAAGCTGAAGCAGCAACCGGAAGAAAGAATGGTCACAAACAAAATAGAAGA
TCACAAAGGAAAAGAACTAGAGACGGCCGACAAGAACAAGGAGAGCAGAGGGTTCAAACC
TGAAAGCGGTTCTCCAGCTAAGAAAACACCAATAACTCCAGGGCCCTGGAAGGTGCCAAG
TGCAAGCAGAGCCACAGGCACTACGGGTGTGGCCGAGAAGCGGTTGTGACCTTTAGTATA
AAACAAAGAAAAACAAGTTGTAATCTTCCTAAAAAGCAGCATTCACAGCCCTGCCCACCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61830578|ref|XP_585425.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61830578|ref|XP_585425.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               559-678, - strand, RNAz p=0.689268

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-678, - strand, RNAz p=0.689268

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1019, gnl|bosTau2|chr3 (24607191-24606150)
               

               
               1-1019, gnl|Hg17|chr1 (113937690-113938740)
               

               
               1-1019, gnl|Mm7|chr3 (103809922-103808895)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1019, gnl|bosTau2|chr3 (24607191-24606150)
               

               
               1-1019, gnl|Hg17|chr1 (113937690-113938740)
               

               
               1-1019, gnl|Mm7|chr3 (103809922-103808895)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

	1-1019, gnl\|bosTau2\|chr3 (24607191-24606150)
	1-1019, gnl\|Hg17\|chr1 (113937690-113938740)
	1-1019, gnl\|Mm7\|chr3 (103809922-103808895)

	ece (0.229305)
	cty (0.20816)
	hea (0.204499)
	gul (0.177588)
	sin (0.174948)
	pla (0.133672)
	ret (0.128733)