Ss1.1-Lng1-LNG010005G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTGCGAGCCACAGCGCGCGAGGCGAGCCAGCGAGAGGTCGATCGGTGCTGCCTGCTGC TTGTAGCCTAGGCGGGCCGGCGAGCCAGTGCGCGTGCGCGGCGGCGGCCTCCGCGGCGAC CGGGAGCGGACGCGCGGGCTAGCAAGCGAGTGGAGCTGGGCGCGAGGCGAGGCCGAGCCA TAGCGACATGGGGGACCGCGAACAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGA GCGCTACGACGACATGGCCTCCGCCATGAAGGCGGTGACAGAGCTCAATGAACCTCTCTC CAATGAGGACCGAAACCTCCTCTCTGTGGCCTACAAGAATGTGGTCGGTGCCCGGCGGTC TTCCTGGAGGGTCATCAGCAGCATTGAGCAGAAAACCATGGCCGACGGGAACGAGAAGAA GTTGGAGAAGGTTAAGGCTTACCGGGAGAAGATAGAGAAGGAGCTGGAGACGGTGTGCAA TGATGTGCTGGCTTTGCTAGACAAGTTCCTCATCAAGAACTGCAATGATTTCCAGTACGA GAGCAAGGTCTTCTACCTGAAGATGAAGGGCGATTACTACCGCTACCTGGCCGAGGTGGC TTCTGGGGAGAAGAAAAACAGCGTGGTTGAAGCTTCAGAGGCTGCCTACAAGGAAGCCTT TGAAATTAGCAAAGAGCACATGCAGCCGACACACCCCATCCGGCTGGGCCTGGCCCTCAA CTTCTCCGTGTTCTACTATGAGATCCAGAACGCACCGGAGCAGGCCTGTCTCTTAGCCAA ACAGGCCTTTGATGACGCCATAGCCGAGCTGGACACACTAAATGAGGATTCCTATAAGGA CTCCACGCTCATCATGCAGCTGCTGCGAGATAACCTCACCCTCTGGACCAGCGACCAGCA GGACGAAGAAGCCGGAGAAGGCAACTGAGGCTCCCTGACCTGCCCCGCCCCCGCCCCATC ACCACCGGTCCTTCCTCGCCACAGTCACTCAGTATCCAGTGCTAAACCTATGTGTATGAC AGCACAGCTACTCAGATCTGCTCTCCGCCCCTGGGAAGCAGTTCCAGATAAATTTATGGG CATTGCTGGACTGATGATTGCTTTGAGACCACGGGAGCTCCCTTTTCGAATTGAGCAGAC AGGTGCGTTCTGAAGGAGGCATTTCACCATGCCTGCAGTCTAGGTGAATTGCAGGTAAAA GCAGTGGGGAAGTTAGAAACTAGAAAGGAGACTCAGCCTTTAACAGGCCACAGTTGGTAT TTAAATGGTCCATTTAAAACAAGCTGATAGTGTTTTGTTAAGCAGTACATCTGTGCATGC AAAAATGAATTCGCCCCTCCCACCTCTTTCTTCAGCTAATGGAAAACTTAGGGGAAGCTG AGATGAAGAGACCACTTGCTCCTTTCCATCCGCTTGGTAATAAACTGTTTAATGTGAGGT TTCAGTAGCGCCTTGTTTTGCCTCTTTAAATTATGACGTGCACAACCTTCTTTTCAATGC AATGCATCTAAAGTTTTGATACCTGTACCTTTTTTTTTTTTTGGTTGCGATTGTTTAAGA ATCATGGATTTATTTTTTGTAACTCTTTGGCTGTTGTCCTTGTGTATCCTGACAGCACCA TGTGTGTCAGCCCATGTCAATCAAGATGGGTAATTATGAAATGCCAGACTTCTAAATTAA ATGTTTTGGAATTCAGTGGGTAAATAAATGCTGCTTTGGGGATATTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTGCGAGCCACAGCGCGCGAGGCGAGCCAGCGAGAGGTCGATCGGTGCTGCCTGCTGC TTGTAGCCTAGGCGGGCCGGCGAGCCAGTGCGCGTGCGCGGCGGCGGCCTCCGCGGCGAC CGGGAGCGGACGCGCGGGCTAGCAAGCGAGTGGAGCTGGGCGCGAGGCGAGGCCGAGCCA TAGCGACATGGGGGACCGCGAACAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGA GCGCTACGACGACATGGCCTCCGCCATGAAGGCGGTGACAGAGCTCAATGAACCTCTCTC CAATGAGGACCGAAACCTCCTCTCTGTGGCCTACAAGAATGTGGTCGGTGCCCGGCGGTC TTCCTGGAGGGTCATCAGCAGCATTGAGCAGAAAACCATGGCCGACGGGAACGAGAAGAA GTTGGAGAAGGTTAAGGCTTACCGGGAGAAGATAGAGAAGGAGCTGGAGACGGTGTGCAA TGATGTGCTGGCTTTGCTAGACAAGTTCCTCATCAAGAACTGCAATGATTTCCAGTACGA GAGCAAGGTCTTCTACCTGAAGATGAAGGGCGATTACTACCGCTACCTGGCCGAGGTGGC TTCTGGGGAGAAGAAAAACAGCGTGGTTGAAGCTTCAGAGGCTGCCTACAAGGAAGCCTT TGAAATTAGCAAAGAGCACATGCAGCCGACACACCCCATCCGGCTGGGCCTGGCCCTCAA CTTCTCCGTGTTCTACTATGAGATCCAGAACGCACCGGAGCAGGCCTGTCTCTTAGCCAA ACAGGCCTTTGATGACGCCATAGCCGAGCTGGACACACTAAATGAGGATTCCTATAAGGA CTCCACGCTCATCATGCAGCTGCTGCGAGATAACCTCACCCTCTGGACCAGCGACCAGCA GGACGAAGAAGCCGGAGAAGGCAACTGAGGCTCCCTGACCTGCCCCGCCCCCGCCCCATC ACCACCGGTCCTTCCTCGCCACAGTCACTCAGTATCCAGTGCTAAACCTATGTGTATGAC AGCACAGCTACTCAGATCTGCTCTCCGCCCCTGGGAAGCAGTTCCAGATAAATTTATGGG CATTGCTGGACTGATGATTGCTTTGAGACCACGGGAGCTCCCTTTTCGAATTGAGCAGAC AGGTGCGTTCTGAAGGAGGCATTTCACCATGCCTGCAGTCTAGGTGAATTGCAGGTAAAA GCAGTGGGGAAGTTAGAAACTAGAAAGGAGACTCAGCCTTTAACAGGCCACAGTTGGTAT TTAAATGGTCCATTTAAAACAAGCTGATAGTGTTTTGTTAAGCAGTACATCTGTGCATGC AAAAATGAATTCGCCCCTCCCACCTCTTTCTTCAGCTAATGGAAAACTTAGGGGAAGCTG AGATGAAGAGACCACTTGCTCCTTTCCATCCGCTTGGTAATAAACTGTTTAATGTGAGGT TTCAGTAGCGCCTTGTTTTGCCTCTTTAAATTATGACGTGCACAACCTTCTTTTCAATGC AATGCATCTAAAGTTTTGATACCTGTACCTTTTTTTTTTTTTGGTTGCGATTGTTTAAGA ATCATGGATTTATTTTTTGTAACTCTTTGGCTGTTGTCCTTGTGTATCCTGACAGCACCA TGTGTGTCAGCCCATGTCAATCAAGATGGGTAATTATGAAATGCCAGACTTCTAAATTAA ATGTTTTGGAATTCAGTGGGTAAATAAATGCTGCTTTGGGGATATTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 204-479, gnl|bosTau2|chr11 (68309342-68309611) | |
| 204-479, gnl|Hg17|chr2 (9721166-9720897) | |
| 204-479, gnl|Mm7|chr12 (19776483-19776214) | |
| 644-768, gnl|bosTau2|chr11 (68336862-68336986) | |
| 644-768, gnl|canFam2|chr17 (9636934-9637120) | |
| 644-768, gnl|danRer3|chr20 (36800273-36800472) | |
| 644-768, gnl|dasNov1|scaffold_13187 (42567-42731) | |
| 644-768, gnl|echTel1|scaffold_290334 (33939-34142) | |
| 644-768, gnl|fr1|chrUn (134354687-134354513) | |
| 644-768, gnl|galGal2|chr3 (94531091-94531273) | |
| 644-768, gnl|hg17|chr2 (9678883-9679079) | |
| 644-768, gnl|Hg17|chr2 (9679032-9678908) | |
| 644-768, gnl|loxAfr1|scaffold_10725 (42556-42748) | |
| 644-768, gnl|mm7|chr12 (19755678-19755874) | |
| 644-768, gnl|Mm7|chr12 (19755827-19755703) | |
| 644-768, gnl|monDom2|scaffold_1 (127372404-127372596) | |
| 644-768, gnl|oryCun1|scaffold_182255 (67066-67259) | |
| 644-768, gnl|panTro1|chr12 (10327875-10328071) | |
| 644-768, gnl|rheMac2|chr5 (109582222-109582058) | |
| 644-768, gnl|rn3|chr6 (41953778-41953972) | |
| 644-768, gnl|tetNig1|chr9 (6333152-6332962) | |
| 644-768, gnl|xenTro1|scaffold_469 (7842-8023) | |
| 903-1751, gnl|bosTau2|chr25 (33587872-33587033) | |
| 903-1751, gnl|Hg17|chr22 (30677308-30678144) | |
| 903-1751, gnl|Mm7|chr3 (98617174-98617994) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-479, gnl|bosTau2|chr11 (68309342-68309611) | |
| 204-479, gnl|Hg17|chr2 (9721166-9720897) | |
| 204-479, gnl|Mm7|chr12 (19776483-19776214) | |
| 644-768, gnl|bosTau2|chr11 (68336862-68336986) | |
| 644-768, gnl|canFam2|chr17 (9636934-9637120) | |
| 644-768, gnl|danRer3|chr20 (36800273-36800472) | |
| 644-768, gnl|dasNov1|scaffold_13187 (42567-42731) | |
| 644-768, gnl|echTel1|scaffold_290334 (33939-34142) | |
| 644-768, gnl|fr1|chrUn (134354687-134354513) | |
| 644-768, gnl|galGal2|chr3 (94531091-94531273) | |
| 644-768, gnl|hg17|chr2 (9678883-9679079) | |
| 644-768, gnl|Hg17|chr2 (9679032-9678908) | |
| 644-768, gnl|loxAfr1|scaffold_10725 (42556-42748) | |
| 644-768, gnl|mm7|chr12 (19755678-19755874) | |
| 644-768, gnl|Mm7|chr12 (19755827-19755703) | |
| 644-768, gnl|monDom2|scaffold_1 (127372404-127372596) | |
| 644-768, gnl|oryCun1|scaffold_182255 (67066-67259) | |
| 644-768, gnl|panTro1|chr12 (10327875-10328071) | |
| 644-768, gnl|rheMac2|chr5 (109582222-109582058) | |
| 644-768, gnl|rn3|chr6 (41953778-41953972) | |
| 644-768, gnl|tetNig1|chr9 (6333152-6332962) | |
| 644-768, gnl|xenTro1|scaffold_469 (7842-8023) | |
| 903-1751, gnl|bosTau2|chr25 (33587872-33587033) | |
| 903-1751, gnl|Hg17|chr22 (30677308-30678144) | |
| 903-1751, gnl|Mm7|chr3 (98617174-98617994) |
| Expressed library(ies): 61 entry(ies) | More info |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
| cbe (3.34928) | |
| cbr (1.91963) | |
| fcc (1.78006) | |
| spc (1.70049) | |
| ebs (1.30131) | |
| hyp (1.14269) | |
| cty (1.0408) | |
| bla (0.994777) | |
| ece (0.917221) | |
| fbs (0.876732) | |
| pgl (0.829384) | |
| hea (0.817996) | |
| clu (0.717875) | |
| eye (0.682012) | |
| fhi (0.678311) | |
| nco (0.646935) | |
| nms (0.641574) | |
| fco (0.628832) | |
| eep (0.61282) | |
| fat (0.58971) | |
| spl (0.572738) | |
| ton (0.526501) | |
| thg (0.507164) | |
| mgp (0.461361) | |
| ecc (0.46014) | |
| eli (0.455443) | |
| liv (0.438853) | |
| lin (0.436808) | |
| csk (0.422238) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| jej (0.395687) | |
| ova (0.387397) | |
| ret (0.3862) | |
| sug (0.381874) | |
| gul (0.355177) | |
| duo (0.345602) | |
| cbl (0.344392) | |
| cag (0.302389) | |
| nbm (0.297974) | |
| ski (0.29347) | |
| pty (0.285429) | |
| fce (0.271592) | |
| cly (0.241284) | |
| tes (0.207814) | |
| fli (0.202881) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| jca (0.11396) |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (3.34928) | |
| cbr (1.91963) | |
| fcc (1.78006) | |
| spc (1.70049) | |
| ebs (1.30131) | |
| hyp (1.14269) | |
| cty (1.0408) | |
| bla (0.994777) | |
| ece (0.917221) | |
| fbs (0.876732) | |
| pgl (0.829384) | |
| hea (0.817996) | |
| clu (0.717875) | |
| eye (0.682012) | |
| fhi (0.678311) | |
| nco (0.646935) | |
| nms (0.641574) | |
| fco (0.628832) | |
| eep (0.61282) | |
| fat (0.58971) | |
| spl (0.572738) | |
| ton (0.526501) | |
| thg (0.507164) | |
| mgp (0.461361) | |
| ecc (0.46014) | |
| eli (0.455443) | |
| liv (0.438853) | |
| lin (0.436808) | |
| csk (0.422238) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| jej (0.395687) | |
| ova (0.387397) | |
| ret (0.3862) | |
| sug (0.381874) | |
| gul (0.355177) | |
| duo (0.345602) | |
| cbl (0.344392) | |
| cag (0.302389) | |
| nbm (0.297974) | |
| ski (0.29347) | |
| pty (0.285429) | |
| fce (0.271592) | |
| cly (0.241284) | |
| tes (0.207814) | |
| fli (0.202881) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| jca (0.11396) |