Ss1.1-Lng1-LNG010005H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGATGGCGGCACAGGGAGCAGCTGCAGCCGTTGCGGCGGCGACTTCAGGGGTCGCGGG GGAGGGCGAGCCCGGGCCTGGGGAGAATGCGGCGGTCGAGGGGACCGCCCCGTCCCCAGG CCGCGTCTCTCCGCCGACCCCGGCGCGGGGAGAGCCGGAAGTCACCGTGGAAATTGGAGA AACGTACCTGTGCCGGCGACCGGATAGCACCTGGCATTCTGCTGAAGTGATCCAGTCTCG AGTGAACGATCAGGAGGGCCGAGAGGAATTCTATGTACACTATGTGGGCTTTAACCGGCG ACTGGACGAATGGGTAGACAAGAACCGGCTGGCACTGACCAAGACAGTGAAGGATGCCGT GCAGAAGAACTCGGAGAAGTACCTGAGTGAGCTGGCTGAGCAGCCCGAGCGCAAGATCAC TCGCAACCAAAAGCGCAAGCACGATGAGATCAACCACGTGCAGAAGACCTATGCTGAGAT GGACCCCACGACAGCAGCCTTGGAGAAGGAACACGAGGCGATCACCAAGGTGAAGTACGT GGACAAGATCCACATCGGCAACTACGAAATCGATGCCTGGTACTTCTCCCCGTTCCCCGA GGACTATGGGAAGCAGCCGAAACTCTGGCTCTGCGAGTACTGTCTCAAGTACATGAAATA TGAGAAGAGCTACCGCTTCCACTTGGGCCAGTGCCAGTGGCGGCAGCCCCCGGGGAAGGA GATCTACCGCAAGAGCAACATCTCTGTGTACGAGGTGGACGGCAAAGACCACAAGATTTA CTGTCAGAACCTGTGTCTGCTGGCCAAGCTTTTCCTGGACCACAAGACGCTGTACTTTGA CGTGGAGCCGTTCGTCTTCTACATCTTGACCGAGGTGGACAGGCAGGGGGCTCACATCGT CGGCTACTTCTCCAAGGAGAAGGAGTCGCCAGACGGGAACAACGTGGCCTGCATCCTGAC CCTGCCCCCCTACCAGCGCCGAGGCTATGGGAAGTTCCTCATCGCGTTCAGTTATGAGCT GTCCAAGCTGGAGAGCACGGTAGGCTCCCCTGAGAAGCCGCTGTCTGACCTGGGCAAGCT CAGCTACCGCAGCTACTGGTCCTGGGTCCTGCTGGAGATCCTGCGAGACTTCAGGGGCAC ACTGTCCATCAAGGACCTTAGCCAGATGACGAGTATCACCCAGAATGACATCATCAGCAC CCTCCAGTCCCTCAACATGGTCAAGTACTGGAAGGGCCAGCACGTGATCTGCGTCACGCC CAAGCTGGTGGAGGAGCATCTCAAGAGTGCCCAGTATAAGAAACCGCCCATAACGGTGGA CTCTGTCTGCCTCAAGTGGGCGCCCCCCAAGCACAAGCAAGTCAAACTCTCCAAGAAGTG AGTGGCCTGCGCCCCTGCTGCTGGACCCGAGCCTCCTTGCCCCGAGCCTGTAAATATGTA CAGACCCGTTTCGTCATTTTTTTAAAATAAAGTTCTGCCGGCGGCCCTGGACTCTGGCGG TGGCAGGGAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGATGGCGGCACAGGGAGCAGCTGCAGCCGTTGCGGCGGCGACTTCAGGGGTCGCGGG GGAGGGCGAGCCCGGGCCTGGGGAGAATGCGGCGGTCGAGGGGACCGCCCCGTCCCCAGG CCGCGTCTCTCCGCCGACCCCGGCGCGGGGAGAGCCGGAAGTCACCGTGGAAATTGGAGA AACGTACCTGTGCCGGCGACCGGATAGCACCTGGCATTCTGCTGAAGTGATCCAGTCTCG AGTGAACGATCAGGAGGGCCGAGAGGAATTCTATGTACACTATGTGGGCTTTAACCGGCG ACTGGACGAATGGGTAGACAAGAACCGGCTGGCACTGACCAAGACAGTGAAGGATGCCGT GCAGAAGAACTCGGAGAAGTACCTGAGTGAGCTGGCTGAGCAGCCCGAGCGCAAGATCAC TCGCAACCAAAAGCGCAAGCACGATGAGATCAACCACGTGCAGAAGACCTATGCTGAGAT GGACCCCACGACAGCAGCCTTGGAGAAGGAACACGAGGCGATCACCAAGGTGAAGTACGT GGACAAGATCCACATCGGCAACTACGAAATCGATGCCTGGTACTTCTCCCCGTTCCCCGA GGACTATGGGAAGCAGCCGAAACTCTGGCTCTGCGAGTACTGTCTCAAGTACATGAAATA TGAGAAGAGCTACCGCTTCCACTTGGGCCAGTGCCAGTGGCGGCAGCCCCCGGGGAAGGA GATCTACCGCAAGAGCAACATCTCTGTGTACGAGGTGGACGGCAAAGACCACAAGATTTA CTGTCAGAACCTGTGTCTGCTGGCCAAGCTTTTCCTGGACCACAAGACGCTGTACTTTGA CGTGGAGCCGTTCGTCTTCTACATCTTGACCGAGGTGGACAGGCAGGGGGCTCACATCGT CGGCTACTTCTCCAAGGAGAAGGAGTCGCCAGACGGGAACAACGTGGCCTGCATCCTGAC CCTGCCCCCCTACCAGCGCCGAGGCTATGGGAAGTTCCTCATCGCGTTCAGTTATGAGCT GTCCAAGCTGGAGAGCACGGTAGGCTCCCCTGAGAAGCCGCTGTCTGACCTGGGCAAGCT CAGCTACCGCAGCTACTGGTCCTGGGTCCTGCTGGAGATCCTGCGAGACTTCAGGGGCAC ACTGTCCATCAAGGACCTTAGCCAGATGACGAGTATCACCCAGAATGACATCATCAGCAC CCTCCAGTCCCTCAACATGGTCAAGTACTGGAAGGGCCAGCACGTGATCTGCGTCACGCC CAAGCTGGTGGAGGAGCATCTCAAGAGTGCCCAGTATAAGAAACCGCCCATAACGGTGGA CTCTGTCTGCCTCAAGTGGGCGCCCCCCAAGCACAAGCAAGTCAAACTCTCCAAGAAGTG AGTGGCCTGCGCCCCTGCTGCTGGACCCGAGCCTCCTTGCCCCGAGCCTGTAAATATGTA CAGACCCGTTTCGTCATTTTTTTAAAATAAAGTTCTGCCGGCGGCCCTGGACTCTGGCGG TGGCAGGGAGAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 3-215, gnl|bosTau2|chr25 (22982536-22982748) | |
| 3-215, gnl|Hg17|chr16 (31036502-31036714) | |
| 3-215, gnl|Mm7|chr7 (124009088-124009300) | |
| 291-466, gnl|bosTau2|chr25 (22984107-22984282) | |
| 291-466, gnl|Hg17|chr16 (31039161-31039336) | |
| 291-466, gnl|Mm7|chr7 (124011937-124012112) | |
| 520-686, gnl|bosTau2|chr25 (22988188-22988354) | |
| 520-686, gnl|canFam2|chr6 (20129829-20129621) | |
| 520-686, gnl|danRer3|chr3 (27225963-27225781) | |
| 520-686, gnl|echTel1|scaffold_228628 (2684-2477) | |
| 520-686, gnl|fr1|chrUn (146940760-146940947) | |
| 520-686, gnl|hg17|chr16 (31045994-31046196) | |
| 520-686, gnl|Hg17|chr16 (31046010-31046176) | |
| 520-686, gnl|loxAfr1|scaffold_27247 (12863-12660) | |
| 520-686, gnl|mm7|chr7 (124016963-124017169) | |
| 520-686, gnl|Mm7|chr7 (124016979-124017145) | |
| 520-686, gnl|monDom2|scaffold_17 (9157023-9157223) | |
| 520-686, gnl|oryCun1|scaffold_211153 (83025-82816) | |
| 520-686, gnl|panTro1|chr18 (31837644-31837846) | |
| 520-686, gnl|rn3|chr1 (187355330-187355552) | |
| 520-686, gnl|tetNig1|chr3 (14025004-14025191) | |
| 520-686, gnl|xenTro1|scaffold_690 (341907-342094) | |
| 774-917, gnl|bosTau2|chr19 (29559492-29559349) | |
| 774-917, gnl|canFam2|chr27 (37847427-37847568) | |
| 774-917, gnl|canFam2|chr9 (29191521-29191694) | |
| 774-917, gnl|danRer3|chr3 (26939632-26939784) | |
| 774-917, gnl|danRer3|chr3 (26939867-26939636) | |
| 774-917, gnl|dasNov1|scaffold_3555 (35960-36133) | |
| 774-917, gnl|dasNov1|scaffold_3555 (36126-35985) | |
| 774-917, gnl|echTel1|scaffold_162535 (564-736) | |
| 774-917, gnl|echTel1|scaffold_162535 (726-588) | |
| 774-917, gnl|fr1|chrUn (264793514-264793685) | |
| 774-917, gnl|fr1|chrUn (91393873-91394113) | |
| 774-917, gnl|galGal2|chrUn (85028886-85029048) | |
| 774-917, gnl|galGal2|chrUn (85029044-85028903) | |
| 774-917, gnl|hg17|chr17 (45253987-45254160) | |
| 774-917, gnl|Hg17|chr17 (45254009-45254152) | |
| 774-917, gnl|hg17|chrX (95034922-95035063) | |
| 774-917, gnl|loxAfr1|scaffold_15739 (55199-55058) | |
| 774-917, gnl|loxAfr1|scaffold_2557 (54529-54393) | |
| 774-917, gnl|mm7|chr11 (95390704-95390533) | |
| 774-917, gnl|mm7|chr11 (95390540-95390681) | |
| 774-917, gnl|Mm7|chr11 (95390682-95390539) | |
| 774-917, gnl|monDom2|scaffold_18 (43809200-43809030) | |
| 774-917, gnl|monDom2|scaffold_18 (43809044-43809185) | |
| 774-917, gnl|oryCun1|scaffold_199541 (75367-75196) | |
| 774-917, gnl|oryCun1|scaffold_199541 (75203-75344) | |
| 774-917, gnl|panTro1|chr19_random (30862238-30862411) | |
| 774-917, gnl|panTro1|chr19_random (30862404-30862270) | |
| 774-917, gnl|rheMac2|chr16 (34064358-34064531) | |
| 774-917, gnl|rheMac2|chr16 (34064524-34064383) | |
| 774-917, gnl|rn3|chr10 (83981381-83981210) | |
| 774-917, gnl|rn3|chr10 (83981217-83981358) | |
| 774-917, gnl|tetNig1|chr2 (4203086-4203234) | |
| 774-917, gnl|tetNig1|chr2 (4203331-4203090) | |
| 774-917, gnl|xenTro1|scaffold_1185 (65617-65775) | |
| 774-917, gnl|xenTro1|scaffold_1185 (65773-65632) | |
| 1159-1319, gnl|bosTau2|chr25 (22991622-22991783) | |
| 1159-1319, gnl|Hg17|chr16 (31049565-31049726) | |
| 1159-1319, gnl|Mm7|chr7 (124021664-124021825) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-215, gnl|bosTau2|chr25 (22982536-22982748) | |
| 3-215, gnl|Hg17|chr16 (31036502-31036714) | |
| 3-215, gnl|Mm7|chr7 (124009088-124009300) | |
| 291-466, gnl|bosTau2|chr25 (22984107-22984282) | |
| 291-466, gnl|Hg17|chr16 (31039161-31039336) | |
| 291-466, gnl|Mm7|chr7 (124011937-124012112) | |
| 520-686, gnl|bosTau2|chr25 (22988188-22988354) | |
| 520-686, gnl|canFam2|chr6 (20129829-20129621) | |
| 520-686, gnl|danRer3|chr3 (27225963-27225781) | |
| 520-686, gnl|echTel1|scaffold_228628 (2684-2477) | |
| 520-686, gnl|fr1|chrUn (146940760-146940947) | |
| 520-686, gnl|hg17|chr16 (31045994-31046196) | |
| 520-686, gnl|Hg17|chr16 (31046010-31046176) | |
| 520-686, gnl|loxAfr1|scaffold_27247 (12863-12660) | |
| 520-686, gnl|mm7|chr7 (124016963-124017169) | |
| 520-686, gnl|Mm7|chr7 (124016979-124017145) | |
| 520-686, gnl|monDom2|scaffold_17 (9157023-9157223) | |
| 520-686, gnl|oryCun1|scaffold_211153 (83025-82816) | |
| 520-686, gnl|panTro1|chr18 (31837644-31837846) | |
| 520-686, gnl|rn3|chr1 (187355330-187355552) | |
| 520-686, gnl|tetNig1|chr3 (14025004-14025191) | |
| 520-686, gnl|xenTro1|scaffold_690 (341907-342094) | |
| 774-917, gnl|bosTau2|chr19 (29559492-29559349) | |
| 774-917, gnl|canFam2|chr27 (37847427-37847568) | |
| 774-917, gnl|canFam2|chr9 (29191521-29191694) | |
| 774-917, gnl|danRer3|chr3 (26939632-26939784) | |
| 774-917, gnl|danRer3|chr3 (26939867-26939636) | |
| 774-917, gnl|dasNov1|scaffold_3555 (35960-36133) | |
| 774-917, gnl|dasNov1|scaffold_3555 (36126-35985) | |
| 774-917, gnl|echTel1|scaffold_162535 (564-736) | |
| 774-917, gnl|echTel1|scaffold_162535 (726-588) | |
| 774-917, gnl|fr1|chrUn (264793514-264793685) | |
| 774-917, gnl|fr1|chrUn (91393873-91394113) | |
| 774-917, gnl|galGal2|chrUn (85028886-85029048) | |
| 774-917, gnl|galGal2|chrUn (85029044-85028903) | |
| 774-917, gnl|hg17|chr17 (45253987-45254160) | |
| 774-917, gnl|Hg17|chr17 (45254009-45254152) | |
| 774-917, gnl|hg17|chrX (95034922-95035063) | |
| 774-917, gnl|loxAfr1|scaffold_15739 (55199-55058) | |
| 774-917, gnl|loxAfr1|scaffold_2557 (54529-54393) | |
| 774-917, gnl|mm7|chr11 (95390704-95390533) | |
| 774-917, gnl|mm7|chr11 (95390540-95390681) | |
| 774-917, gnl|Mm7|chr11 (95390682-95390539) | |
| 774-917, gnl|monDom2|scaffold_18 (43809200-43809030) | |
| 774-917, gnl|monDom2|scaffold_18 (43809044-43809185) | |
| 774-917, gnl|oryCun1|scaffold_199541 (75367-75196) | |
| 774-917, gnl|oryCun1|scaffold_199541 (75203-75344) | |
| 774-917, gnl|panTro1|chr19_random (30862238-30862411) | |
| 774-917, gnl|panTro1|chr19_random (30862404-30862270) | |
| 774-917, gnl|rheMac2|chr16 (34064358-34064531) | |
| 774-917, gnl|rheMac2|chr16 (34064524-34064383) | |
| 774-917, gnl|rn3|chr10 (83981381-83981210) | |
| 774-917, gnl|rn3|chr10 (83981217-83981358) | |
| 774-917, gnl|tetNig1|chr2 (4203086-4203234) | |
| 774-917, gnl|tetNig1|chr2 (4203331-4203090) | |
| 774-917, gnl|xenTro1|scaffold_1185 (65617-65775) | |
| 774-917, gnl|xenTro1|scaffold_1185 (65773-65632) | |
| 1159-1319, gnl|bosTau2|chr25 (22991622-22991783) | |
| 1159-1319, gnl|Hg17|chr16 (31049565-31049726) | |
| 1159-1319, gnl|Mm7|chr7 (124021664-124021825) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ton (0.351) | |
| fce (0.271592) | |
| cly (0.241284) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| hlv (0.139256) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| fce (0.271592) | |
| cly (0.241284) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| hlv (0.139256) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |