Ss1.1-Lng1-LNG010006A04.5
|
TTAGAAGGCTCAGGCCGTTGTGCTATTCGCGCGTTAGAAGGCTCAGGCCGTTGTGCTGTG
CTGTCTTCCCGCCTGCGCCAGGGACCTGCCCAACTCAGTGGTGACCATGGCATCAGACGA
GGGCAAACTTTTCGTTGGAGGGCTGAGCTTTGACACCAATGAGCAGTCGCTGGAGCAGGT
CTTCTCAAAATATGGGCAGATCTCAGAAGTGGTAGTAGTGAAGGACAGGGAGACCCAGCG
ATCGAGGGGCTTTGGGTTTGTCACCTTTGAGAACATTGATGACGCCAAGGACGCTATGAT
GGCCATGAACGGGAAGTCTGTGGATGGGCGGCAGATCCGGGTTGACCAGGCCGGGAAGTC
ATCTGATAACCGATCCCGTGGGTACCGAGGTGGCTCCTCGGGGGGCCGGGGCTTCTTCCG
TGGGGGCCGAGGCCGGGGCCGTGGGTTCTCCAGAGGAGGAGGGGATCGAGGCTATGGTGG
TAGCCGGTTCGAGTCCAGGAGTGGGGGCTATGGCGGCTCCAGGGACTACTACAGCAGCCG
GAGTCAGGGTGGCAGCTATGGTGACCGGAGCTCAGGCGGGTCCTACAGAGACAGCTACGA
CAGTTACGCTACACACAACGAGTAAAAATCCTGCTCAAGATCGTCCTTCCAATGGCTGTA
TATTTAAAGATTTTGGGAGCTCCGCTGAATCGTTAATGTGTAGTGAATCCACCTCCTTGT
ACCCACTTTTGTAGTCTTATCAGTTCCTATCTTGTCAAACACAGCCTGACTGCTTCTGAC
CCCAGATGGCCTCATTATTACACTTTTCTTTTTAAAGAAGTGCCATCTGTTTTTGAGGAT
TTTGAACATGTTTTGCAAAGCACTTCAGGTTTTACTTTTTATCGTGAGCCATGAGCTTTT
TAGAAAAATCATTGAGGGTTGCGAGAGTTTGAGTTTGGGTTGTGTTGCCTTTTTTCTCTT
TTTCGTGGGGTCGGCCCCAAGTAGTTAGGGGCCCCGAGTCACTTGTCTTTTGAGTCTGAA
CGGACTCTGAATCCGCTCTTTGTCGGAAGCTGAGCACACTGTGGCTTTTTTTCAGCTCCG
TGTAATGTTCCTGAGCGTAGCATGGTATGGTAGGACCGGGTGGCGGCAGAGGTGCCCGGC
TGCCTGGCCCCACCGCCCCTCTGTACTGTATCATCCACGGTAGACTTGCAGACGTCCCAA
GAGTTTCTTGAAAATGTTTATTTATATTGTCTTTTTTTTTACTGGAAGACGTGTGCATAT
GTCATCGATGTTGTATTTGAAGTGGCTAAGGAATTCTTGTATGCAGTTTTCTTTGGCTTC
ACGAAGCCGATTAAAAGCCCGTCTGAATGAAAAAAATCTGACCATCTCCCTTTGATCACA
CCACACTTTCCCTGCTGCGGACTCGCAGCAGGCAGACCTGAGCAGAGAGGGCAGCTTGAG
GATTAGGTCCACCAGTCCTTCCTGAGGCTGCCGAGAGCTAGAGGAGAAAGGCAGAGGCAA
TGACGCTGGCCAGGCCCCTGTGACAGCGGACTGCCACTGGTCCCAGTTAGGTGAGCAGGT
GGGTGATGGGAGTGGGCTCTTGGACCACAGGGCAGCACCGGGAGGCCTCTGGCAGTGGCA
GCCAGAGGGCTCGACAGGGCGGGCAGCCAAGCAGGGACGGTGGACACACGGGCACCTGAC
ATTGACCCCGAGCACTTTAGTTTAGAAGCAGGCCAGAGAGCAGACGTAAGCAGTGTCCTT
GGGTGACTCCAGATCGACCAGTTTGTTAGCTAGCTCTGCTGTTGCTTTACAAGTTCTGAG
CGTTCTCTGCTAGCCTATGGAAGCTGCAGCCCCTCGGAGGACAGAAGTGTTGTGCGCCCA
ACAGAAACCTCTGAGACGCAAGCTGCTCCCTGGGCTAGCTCATATGTGGAGATAGTCCTG
TAATTCGAGGTAACTCCTTTTGCTCGTCCACATCCCTCTTCTTGTCCAGAGCTCTTTTGA
AAGTAAAGTCATGTAACCGGGGAATGTTCCTTTGACTGGTTTTTGCTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTAGAAGGCTCAGGCCGTTGTGCTATTCGCGCGTTAGAAGGCTCAGGCCGTTGTGCTGTG
CTGTCTTCCCGCCTGCGCCAGGGACCTGCCCAACTCAGTGGTGACCATGGCATCAGACGA
GGGCAAACTTTTCGTTGGAGGGCTGAGCTTTGACACCAATGAGCAGTCGCTGGAGCAGGT
CTTCTCAAAATATGGGCAGATCTCAGAAGTGGTAGTAGTGAAGGACAGGGAGACCCAGCG
ATCGAGGGGCTTTGGGTTTGTCACCTTTGAGAACATTGATGACGCCAAGGACGCTATGAT
GGCCATGAACGGGAAGTCTGTGGATGGGCGGCAGATCCGGGTTGACCAGGCCGGGAAGTC
ATCTGATAACCGATCCCGTGGGTACCGAGGTGGCTCCTCGGGGGGCCGGGGCTTCTTCCG
TGGGGGCCGAGGCCGGGGCCGTGGGTTCTCCAGAGGAGGAGGGGATCGAGGCTATGGTGG
TAGCCGGTTCGAGTCCAGGAGTGGGGGCTATGGCGGCTCCAGGGACTACTACAGCAGCCG
GAGTCAGGGTGGCAGCTATGGTGACCGGAGCTCAGGCGGGTCCTACAGAGACAGCTACGA
CAGTTACGCTACACACAACGAGTAAAAATCCTGCTCAAGATCGTCCTTCCAATGGCTGTA
TATTTAAAGATTTTGGGAGCTCCGCTGAATCGTTAATGTGTAGTGAATCCACCTCCTTGT
ACCCACTTTTGTAGTCTTATCAGTTCCTATCTTGTCAAACACAGCCTGACTGCTTCTGAC
CCCAGATGGCCTCATTATTACACTTTTCTTTTTAAAGAAGTGCCATCTGTTTTTGAGGAT
TTTGAACATGTTTTGCAAAGCACTTCAGGTTTTACTTTTTATCGTGAGCCATGAGCTTTT
TAGAAAAATCATTGAGGGTTGCGAGAGTTTGAGTTTGGGTTGTGTTGCCTTTTTTCTCTT
TTTCGTGGGGTCGGCCCCAAGTAGTTAGGGGCCCCGAGTCACTTGTCTTTTGAGTCTGAA
CGGACTCTGAATCCGCTCTTTGTCGGAAGCTGAGCACACTGTGGCTTTTTTTCAGCTCCG
TGTAATGTTCCTGAGCGTAGCATGGTATGGTAGGACCGGGTGGCGGCAGAGGTGCCCGGC
TGCCTGGCCCCACCGCCCCTCTGTACTGTATCATCCACGGTAGACTTGCAGACGTCCCAA
GAGTTTCTTGAAAATGTTTATTTATATTGTCTTTTTTTTTACTGGAAGACGTGTGCATAT
GTCATCGATGTTGTATTTGAAGTGGCTAAGGAATTCTTGTATGCAGTTTTCTTTGGCTTC
ACGAAGCCGATTAAAAGCCCGTCTGAATGAAAAAAATCTGACCATCTCCCTTTGATCACA
CCACACTTTCCCTGCTGCGGACTCGCAGCAGGCAGACCTGAGCAGAGAGGGCAGCTTGAG
GATTAGGTCCACCAGTCCTTCCTGAGGCTGCCGAGAGCTAGAGGAGAAAGGCAGAGGCAA
TGACGCTGGCCAGGCCCCTGTGACAGCGGACTGCCACTGGTCCCAGTTAGGTGAGCAGGT
GGGTGATGGGAGTGGGCTCTTGGACCACAGGGCAGCACCGGGAGGCCTCTGGCAGTGGCA
GCCAGAGGGCTCGACAGGGCGGGCAGCCAAGCAGGGACGGTGGACACACGGGCACCTGAC
ATTGACCCCGAGCACTTTAGTTTAGAAGCAGGCCAGAGAGCAGACGTAAGCAGTGTCCTT
GGGTGACTCCAGATCGACCAGTTTGTTAGCTAGCTCTGCTGTTGCTTTACAAGTTCTGAG
CGTTCTCTGCTAGCCTATGGAAGCTGCAGCCCCTCGGAGGACAGAAGTGTTGTGCGCCCA
ACAGAAACCTCTGAGACGCAAGCTGCTCCCTGGGCTAGCTCATATGTGGAGATAGTCCTG
TAATTCGAGGTAACTCCTTTTGCTCGTCCACATCCCTCTTCTTGTCCAGAGCTCTTTTGA
AAGTAAAGTCATGTAACCGGGGAATGTTCCTTTGACTGGTTTTTGCTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
104-209, gnl|bosTau2|chr7 (29181173-29181068) |
|
104-209, gnl|Hg17|chr19 (1221930-1222035) |
|
104-209, gnl|Mm7|chr10 (79952106-79952211) |
| |
|
315-456, gnl|bosTau2|chr7 (29180784-29180643) |
|
315-456, gnl|Hg17|chr19 (1222326-1222467) |
|
315-456, gnl|Mm7|chr10 (79952495-79952636) |
| |
|
608-1144, gnl|bosTau2|chr7 (29179986-29179454) |
|
608-1144, gnl|Hg17|chr19 (1223425-1223977) |
| |
|
1196-2022, gnl|bosTau2|chr7 (29179428-29178610) |
|
1196-2022, gnl|Hg17|chr19 (1224017-1224802) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
104-209, gnl|bosTau2|chr7 (29181173-29181068) |
|
104-209, gnl|Hg17|chr19 (1221930-1222035) |
|
104-209, gnl|Mm7|chr10 (79952106-79952211) |
| |
|
315-456, gnl|bosTau2|chr7 (29180784-29180643) |
|
315-456, gnl|Hg17|chr19 (1222326-1222467) |
|
315-456, gnl|Mm7|chr10 (79952495-79952636) |
| |
|
608-1144, gnl|bosTau2|chr7 (29179986-29179454) |
|
608-1144, gnl|Hg17|chr19 (1223425-1223977) |
| |
|
1196-2022, gnl|bosTau2|chr7 (29179428-29178610) |
|
1196-2022, gnl|Hg17|chr19 (1224017-1224802) |
|
nmm (0.664011) |
|
tes (0.623441) |
|
cga (0.558191) |
|
eru (0.480192) |
|
ece (0.45861) |
|
mas (0.42061) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
ebs (0.354904) |
|
duo (0.345602) |
|
nje (0.33184) |
|
nco (0.323468) |
|
csp (0.322373) |
|
eje (0.296501) |
|
spl (0.286369) |
|
fce (0.271592) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fli (0.202881) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
cbr (0.127975) |
|
bla (0.124347) |
|
tra (0.123092) |
|
clu (0.119646) |
|
med (0.116252) |
|
spc (0.113366) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
nmm (0.664011) |
|
tes (0.623441) |
|
cga (0.558191) |
|
eru (0.480192) |
|
ece (0.45861) |
|
mas (0.42061) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
ebs (0.354904) |
|
duo (0.345602) |
|
nje (0.33184) |
|
nco (0.323468) |
|
csp (0.322373) |
|
eje (0.296501) |
|
spl (0.286369) |
|
fce (0.271592) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fli (0.202881) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
cbr (0.127975) |
|
bla (0.124347) |
|
tra (0.123092) |
|
clu (0.119646) |
|
med (0.116252) |
|
spc (0.113366) |
|
cty (0.10408) |
|
jej (0.0989218) |
