Ss1.1-Lng1-LNG010006C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGCGCTCCGGTGGAATGAACCTTACTTGTTGAATATCTCCTGGTTACTAGTTGGATT CACTTGTGAAAGAATCATTTTCCCCTGCGTTGAAGCCACTTAGTGGCATATTTAAGTATA AGTCCAGGCATCGCAAAGATTTTGATTTCCCAAAGGAGGGACATACCACTATATCGAATA AGCTTGACGTTACAGCCAAAATGGTGCTGTCCCAGAGACAACGAGATGAACTAAATCGAG CTATAGCAGATTATCTTCGTTCAAATGGCTATGAAGAAGCATATTCAGTTTTTAAAAAGG AAGCTGAATTAGATATGAATGAAGAATTAGATAAGAAATATGCTGGTCTTTTGGAAAAAA AATGGACATCTGTTATTAGATTACAAAAGAAGGTTATGGAATTAGAATCAAAACTAAATG AAGCGAAAGAAGAATTTACGTCGGGTGGACCTCTTGGTCAAAAACGAGACCCAAAAGAAT GGATTCCCCGTCCACCAGAAAAATATGCATTGAGTGGTCATAGGAGTCCAGTTACTCGAG TCATTTTCCATCCTGTGTTCAGTGTTATGGTCTCTGCTTCAGAGGATGCTACAATTAAGG TGTGGGATTATGAGACTGGAGATTTTGAAAGAACTCTTAAGGGGCATACAGACTCTGTAC AGGATATATCATTTGACCACAGTGGCAAGCTTCTGGCTTCATGTTCTGCAGATATGACCA TTAAACTATGGGATTTTCAGGGCTTTGAATGCATCAGAACCATGCATGGCCATGACCACA ATGTTTCTTCAGTAGCCATCATGCCCAATGGAGATCATATAGTGTCTGCCTCAAGGGATA AAACTATAAAAATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACATTCACAGGACACA GAGAGTGGGTACGTATGGTGCGGCCAAATCAGGATGGCACGCTGATAGCCAGCTGTTCCA ATGACCAGACTGTGCGCGTATGGGTCGTAGCAACAAAGGAATGCAAGGCTGAGCTTCGAG AACATGAGCATGTGGTAGAATGCATTTCCTGGGCTCCAGAAAGCTCATATTCTTCCATCT CTGAAGCAACAGGATCTGAGACTAAAAAAAGCGGCAAGCCTGGGCCATTCTTACTGTCTG GATCCAGAGATAAGACTATTAAGATGTGGGACGTCAGTACTGGCATGTGCCTTATGACCC TTGTGGGTCATGATAACTGGGTACGTGGAGTTCTGTTCCATTCTGGGGGGAAGTTTATTT TGAGTTGCGCTGATGACAAGACCCTGCGTGTGTGGGATTACAAGAACAAGCGATGCATGA AGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGATTTCCATAAGACGGCACCAT ATGTGGTTACTGGCAGTGTAGATCAAACAGTAAAGGTGTGGGAGTGCCGTTGATTGAGTC TCATTTGGCCCCTCCTCCCTTTTTTCCTCTGGATGCACTCTGATGATACCATGGTTACCC CATTGAGCTCTGTTTAAATAAATATTGTCCTTTCATGTAAATTATTCTGGATGTAGATTG AGCTTATTAAATGTTACACACAAAGTATTCATGCATGGTGAATCCAAATTGTATACTGTA AATTTACATACGTTGTCTAGAAGTACCTTAGGGTTTAAAAACCTGGGCTGGCATTGGTCA CACCAGGCCTAAGAAGGCAGAAGTTGAAATAAATTGAAATAGGGCACTAAACTGAATAGT TGACAGTGTCATTTTATGTTGGATTATTAATTCCTGTTTTCTTTCTGCTATCTGTTGGTG CCTGACTTGATGGCCTCATTTGGGGGAAAGTGGTGGTTATTAGGGCTTTTTCTGAAATGT GTATCTATGTAACATCACTTAAGTGTGCTTAATAAATCTTCTTTAAGGATGTTAGATAAT AAGACTACAATTCAAAATCTTCTGAACCATCTATGTAATTAATGGGGATTACACATTGGA ATTTTTGTCATGACACATTTGCCAAATCAATAGGATACATTTGTTTTGGCAGCCTATCAA GCAAAGGCTAGTGGTATATTTATGTAAGAAAATGACTGTAAATCTGAAATAAGAAAAATC TCAGCAGCTAATAGCAAATCATTTAGTTCATTTGGGTCTTAATGCTTTGTAAACAGGTTT TAAAAACACTGTAATACTCTAAGCTTCTATTTTCCACACTAGACACACTTCTAGTTGTAT TCTCCATACTATTAGACTGTATAGTGATGTGACTTCCAAGTAGAGTTTAATCTTCCCATC GAGTGTGTCATGGTACAAATCACTATTGTTTTTGATGTTTTTTAGGGATGTGCAATGTGC ATAACATAATGACAAAGAAATATTGAAAAGGTTATGTTTGCCCATTTTAAGGGAGTGGGA GAAATACAGCGGTTTGTTTTTCAACATGAATCTGATATCGATTTAAACTGTGTTTAACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGCGCTCCGGTGGAATGAACCTTACTTGTTGAATATCTCCTGGTTACTAGTTGGATT CACTTGTGAAAGAATCATTTTCCCCTGCGTTGAAGCCACTTAGTGGCATATTTAAGTATA AGTCCAGGCATCGCAAAGATTTTGATTTCCCAAAGGAGGGACATACCACTATATCGAATA AGCTTGACGTTACAGCCAAAATGGTGCTGTCCCAGAGACAACGAGATGAACTAAATCGAG CTATAGCAGATTATCTTCGTTCAAATGGCTATGAAGAAGCATATTCAGTTTTTAAAAAGG AAGCTGAATTAGATATGAATGAAGAATTAGATAAGAAATATGCTGGTCTTTTGGAAAAAA AATGGACATCTGTTATTAGATTACAAAAGAAGGTTATGGAATTAGAATCAAAACTAAATG AAGCGAAAGAAGAATTTACGTCGGGTGGACCTCTTGGTCAAAAACGAGACCCAAAAGAAT GGATTCCCCGTCCACCAGAAAAATATGCATTGAGTGGTCATAGGAGTCCAGTTACTCGAG TCATTTTCCATCCTGTGTTCAGTGTTATGGTCTCTGCTTCAGAGGATGCTACAATTAAGG TGTGGGATTATGAGACTGGAGATTTTGAAAGAACTCTTAAGGGGCATACAGACTCTGTAC AGGATATATCATTTGACCACAGTGGCAAGCTTCTGGCTTCATGTTCTGCAGATATGACCA TTAAACTATGGGATTTTCAGGGCTTTGAATGCATCAGAACCATGCATGGCCATGACCACA ATGTTTCTTCAGTAGCCATCATGCCCAATGGAGATCATATAGTGTCTGCCTCAAGGGATA AAACTATAAAAATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACATTCACAGGACACA GAGAGTGGGTACGTATGGTGCGGCCAAATCAGGATGGCACGCTGATAGCCAGCTGTTCCA ATGACCAGACTGTGCGCGTATGGGTCGTAGCAACAAAGGAATGCAAGGCTGAGCTTCGAG AACATGAGCATGTGGTAGAATGCATTTCCTGGGCTCCAGAAAGCTCATATTCTTCCATCT CTGAAGCAACAGGATCTGAGACTAAAAAAAGCGGCAAGCCTGGGCCATTCTTACTGTCTG GATCCAGAGATAAGACTATTAAGATGTGGGACGTCAGTACTGGCATGTGCCTTATGACCC TTGTGGGTCATGATAACTGGGTACGTGGAGTTCTGTTCCATTCTGGGGGGAAGTTTATTT TGAGTTGCGCTGATGACAAGACCCTGCGTGTGTGGGATTACAAGAACAAGCGATGCATGA AGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGATTTCCATAAGACGGCACCAT ATGTGGTTACTGGCAGTGTAGATCAAACAGTAAAGGTGTGGGAGTGCCGTTGATTGAGTC TCATTTGGCCCCTCCTCCCTTTTTTCCTCTGGATGCACTCTGATGATACCATGGTTACCC CATTGAGCTCTGTTTAAATAAATATTGTCCTTTCATGTAAATTATTCTGGATGTAGATTG AGCTTATTAAATGTTACACACAAAGTATTCATGCATGGTGAATCCAAATTGTATACTGTA AATTTACATACGTTGTCTAGAAGTACCTTAGGGTTTAAAAACCTGGGCTGGCATTGGTCA CACCAGGCCTAAGAAGGCAGAAGTTGAAATAAATTGAAATAGGGCACTAAACTGAATAGT TGACAGTGTCATTTTATGTTGGATTATTAATTCCTGTTTTCTTTCTGCTATCTGTTGGTG CCTGACTTGATGGCCTCATTTGGGGGAAAGTGGTGGTTATTAGGGCTTTTTCTGAAATGT GTATCTATGTAACATCACTTAAGTGTGCTTAATAAATCTTCTTTAAGGATGTTAGATAAT AAGACTACAATTCAAAATCTTCTGAACCATCTATGTAATTAATGGGGATTACACATTGGA ATTTTTGTCATGACACATTTGCCAAATCAATAGGATACATTTGTTTTGGCAGCCTATCAA GCAAAGGCTAGTGGTATATTTATGTAAGAAAATGACTGTAAATCTGAAATAAGAAAAATC TCAGCAGCTAATAGCAAATCATTTAGTTCATTTGGGTCTTAATGCTTTGTAAACAGGTTT TAAAAACACTGTAATACTCTAAGCTTCTATTTTCCACACTAGACACACTTCTAGTTGTAT TCTCCATACTATTAGACTGTATAGTGATGTGACTTCCAAGTAGAGTTTAATCTTCCCATC GAGTGTGTCATGGTACAAATCACTATTGTTTTTGATGTTTTTTAGGGATGTGCAATGTGC ATAACATAATGACAAAGAAATATTGAAAAGGTTATGTTTGCCCATTTTAAGGGAGTGGGA GAAATACAGCGGTTTGTTTTTCAACATGAATCTGATATCGATTTAAACTGTGTTTAACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1916-2075, + strand, RNAz p=0.776183 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1916-2075, + strand, RNAz p=0.776183 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_000430, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 12-232, gnl|bosTau2|chr19 (18113264-18113485) | |
| 12-232, gnl|Hg17|chr17 (2488142-2488364) | |
| 12-232, gnl|Mm7|chr11 (74781095-74780885) | |
| 390-601, gnl|bosTau2|chr19 (18133005-18133216) | |
| 390-601, gnl|canFam2|chr9 (50034197-50034425) | |
| 390-601, gnl|danRer3|chr15 (30785861-30786074) | |
| 390-601, gnl|echTel1|scaffold_283137 (11898-12106) | |
| 390-601, gnl|fr1|chrUn (84918425-84918208) | |
| 390-601, gnl|galGal2|chr19 (8993874-8994109) | |
| 390-601, gnl|hg17|chr17 (2517034-2517270) | |
| 390-601, gnl|Hg17|chr17 (2517033-2517244) | |
| 390-601, gnl|loxAfr1|scaffold_16440 (30556-30775) | |
| 390-601, gnl|mm7|chr11 (74770761-74770538) | |
| 390-601, gnl|Mm7|chr11 (74770760-74770549) | |
| 390-601, gnl|monDom2|scaffold_86 (3823125-3823350) | |
| 390-601, gnl|oryCun1|scaffold_206134 (67657-67421) | |
| 390-601, gnl|panTro1|chr19 (2708541-2708777) | |
| 390-601, gnl|rheMac2|chr16 (2468671-2468907) | |
| 390-601, gnl|tetNig1|chr10 (10226348-10226558) | |
| 390-601, gnl|xenTro1|scaffold_281 (1016454-1016237) | |
| 871-1100, gnl|bosTau2|chr19 (18140621-18140850) | |
| 871-1100, gnl|Hg17|chr17 (2524103-2524332) | |
| 871-1100, gnl|Mm7|chr11 (74765262-74765033) | |
| 1359-2458, gnl|bosTau2|chr19 (18145511-18146611) | |
| 1359-2458, gnl|Hg17|chr17 (2531772-2532869) | |
| 1359-2458, gnl|Mm7|chr11 (74759317-74758255) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-232, gnl|bosTau2|chr19 (18113264-18113485) | |
| 12-232, gnl|Hg17|chr17 (2488142-2488364) | |
| 12-232, gnl|Mm7|chr11 (74781095-74780885) | |
| 390-601, gnl|bosTau2|chr19 (18133005-18133216) | |
| 390-601, gnl|canFam2|chr9 (50034197-50034425) | |
| 390-601, gnl|danRer3|chr15 (30785861-30786074) | |
| 390-601, gnl|echTel1|scaffold_283137 (11898-12106) | |
| 390-601, gnl|fr1|chrUn (84918425-84918208) | |
| 390-601, gnl|galGal2|chr19 (8993874-8994109) | |
| 390-601, gnl|hg17|chr17 (2517034-2517270) | |
| 390-601, gnl|Hg17|chr17 (2517033-2517244) | |
| 390-601, gnl|loxAfr1|scaffold_16440 (30556-30775) | |
| 390-601, gnl|mm7|chr11 (74770761-74770538) | |
| 390-601, gnl|Mm7|chr11 (74770760-74770549) | |
| 390-601, gnl|monDom2|scaffold_86 (3823125-3823350) | |
| 390-601, gnl|oryCun1|scaffold_206134 (67657-67421) | |
| 390-601, gnl|panTro1|chr19 (2708541-2708777) | |
| 390-601, gnl|rheMac2|chr16 (2468671-2468907) | |
| 390-601, gnl|tetNig1|chr10 (10226348-10226558) | |
| 390-601, gnl|xenTro1|scaffold_281 (1016454-1016237) | |
| 871-1100, gnl|bosTau2|chr19 (18140621-18140850) | |
| 871-1100, gnl|Hg17|chr17 (2524103-2524332) | |
| 871-1100, gnl|Mm7|chr11 (74765262-74765033) | |
| 1359-2458, gnl|bosTau2|chr19 (18145511-18146611) | |
| 1359-2458, gnl|Hg17|chr17 (2531772-2532869) | |
| 1359-2458, gnl|Mm7|chr11 (74759317-74758255) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| tes (0.623441) | |
| elu (0.385356) | |
| ebs (0.354904) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| elu (0.385356) | |
| ebs (0.354904) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |