Non-Coding RNA Search

Ss1.1-Lng1-LNG010006D03.5.5

Sequence:


               
               GCTCCTCTTAGCTCCGCTCCTGCGGGTGTCCTCCACTCGCGCTTTCCCGCTCTCGTCGCG
GCCTCCCGTGCTTCTGCCGCCTGTGCCGCCCCGCGCCGCTTGTAGCCCCGCGCGCAACCA
TGCCCAACATCGTGCTCTTCAGCGGCAGCTCGCACCAGGACCTGTCCCAGCGCGTGGCCG
ACCGGCTCGGCCTGGAGCTGGGCAAGGTGGTCACCAAGAAGTTCAGCAACCAGGAGACCA
GCGTGGAGATTGGCGAAAGCGTGAGGGGGGAGGACGTGTACATCATCCAGAGTGGCTGCG
GCGAAATCAACGACAACCTGATGGAGCTGCTCATCATGATCAACGCCTGCAAGATCGCCT
CCTCCTCCAGGGTGACCGCCGTGATCCCATGCTTCCCCTACGCCCGGCAAGACAAAAAGG
ACAAGAGTCGTGCTCCGATTTCAGCAAAACTTGTGGCCAATATGCTGTCGGTGGCTGGGG
CAGATCACATCATCACCATGGACCTGCATGCCTCTCAGATCCAGGGCTTCTTTGATATCC
CCGTGGACAACTTGTACGCGGAGCCCGCGGTCCTGCAGTGGATTCGGGAGAACATCGCCG
AGTGGAGGAACTGCATCATCGTTTCCCCTGATGCCGGCGGCGCCAAAAGGGTCACGTCAA
TTGCAGACAGGTTGAATGTGGAGTTTGCCTTGATTCACAAGGAGAGGAAGAAGGCGAATG
AAGTGGACCGGATGGTCCTGGTGGGCGACGTGAAGGACCGAGTGGCCATCCTTGTGGATG
ACATGGCTGACACGTGTGGCACCATCTGCCATGCTGCAGACAAGCTACTCTCTGCCGGAG
CCACCAAAGTATATGCTATCCTTACCCATGGGATCTTCTCTGGGCCAGCTATTTCCAGAA
TAAATAATGCCGCCTTTGAGGCTGTTGTTGTCACCAACACCATTCCACAAGAGGACAAAA
TGAAGCACTGCTCCAAGATTCAGGTTATCGACATTTCGATGATCTTGGCCGAGGCCATCC
GCAGGACCCACAACGGCGAATCTGTGTCTTACCTGTTCAGCCACGTCCCGCTCTAAGGCC
AGGATGGGAGGTGTGGAGCAAGCCTGAGCTGGCTTCTGACTCGCGTGCATTTGTCTGATG
TTTTCTTTAGCTTTAGAACTGAGTAGTTATATTAATGCAGAAGCATCAGAACTTTGTGTG
CTCCCCAGCCCAGTGTTTCTCCTTCTAAAGCTCTTGACCGTTGATTTCCAGTTTGCTGGG
GAGGGCGGTGGTTTATTTGATCTTTAAGTGCACAGCCTTCAATGAGAAGTATTTTTGTCG
TCTTGACCTGTTCTGATAGGTGACCTTTTCCTTTGTTCTGGCAGTACTTGGAGGCCACAA
CTTAAGTGCATGTTGCCATTCTGGAAGTTCATAGTTTATGTGTTTCGGGGTTGCCAAAGG
TCACGTCAGATTAAAGCCTCTGTGTAAATATAAAATGACAATGCCTATGGACATTCGGAT
AACACCTTGTAGAGAATTAGCCTTTTACTTCTGAGTCAACCTTTAGAAAATGTGTAATAC
CCTGAGTGTTGAATATTTGTTTCAGTGATCAGGTTTCCAATAAACCCTTTGGGCCATTTT
GCTGAATTTAGACCAAATTTTATGTAGCTGAAGGTGGCCACTGACACATCGATTTTGGGT
AAACATTAGACCTATCAGAGGCAGTGTAATTCAGAATTTTTTCTGTGGCCACTTTTGAAA
AACATGACTATCACTTACGTGCAATATCATGTTCTCGAACTCCAAAATTGTGTTCAGCGG
TAGATCTGATTGAGGAACTGTTTTGAGATAGTCTCCAAGTTCACTGTCACATTCACGCTC
TTCTGTGCCCATCCCAGATGCACCTCGTGTCCTGCCATCGTGGTTTTTTATGTCCCTTTT
TTAGCTCTTGCTTTTACTTTGCCTTTTTTCCAGTGGTTTCATGTTGCGGGTTTCCACTTC
TTAAAGTCCCCACCCATTGACTAGTCCGATCACTGTTTTGCTTTTAACAAAATAAAAAGG
TGAACTTTTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCTCTTAGCTCCGCTCCTGCGGGTGTCCTCCACTCGCGCTTTCCCGCTCTCGTCGCG
GCCTCCCGTGCTTCTGCCGCCTGTGCCGCCCCGCGCCGCTTGTAGCCCCGCGCGCAACCA
TGCCCAACATCGTGCTCTTCAGCGGCAGCTCGCACCAGGACCTGTCCCAGCGCGTGGCCG
ACCGGCTCGGCCTGGAGCTGGGCAAGGTGGTCACCAAGAAGTTCAGCAACCAGGAGACCA
GCGTGGAGATTGGCGAAAGCGTGAGGGGGGAGGACGTGTACATCATCCAGAGTGGCTGCG
GCGAAATCAACGACAACCTGATGGAGCTGCTCATCATGATCAACGCCTGCAAGATCGCCT
CCTCCTCCAGGGTGACCGCCGTGATCCCATGCTTCCCCTACGCCCGGCAAGACAAAAAGG
ACAAGAGTCGTGCTCCGATTTCAGCAAAACTTGTGGCCAATATGCTGTCGGTGGCTGGGG
CAGATCACATCATCACCATGGACCTGCATGCCTCTCAGATCCAGGGCTTCTTTGATATCC
CCGTGGACAACTTGTACGCGGAGCCCGCGGTCCTGCAGTGGATTCGGGAGAACATCGCCG
AGTGGAGGAACTGCATCATCGTTTCCCCTGATGCCGGCGGCGCCAAAAGGGTCACGTCAA
TTGCAGACAGGTTGAATGTGGAGTTTGCCTTGATTCACAAGGAGAGGAAGAAGGCGAATG
AAGTGGACCGGATGGTCCTGGTGGGCGACGTGAAGGACCGAGTGGCCATCCTTGTGGATG
ACATGGCTGACACGTGTGGCACCATCTGCCATGCTGCAGACAAGCTACTCTCTGCCGGAG
CCACCAAAGTATATGCTATCCTTACCCATGGGATCTTCTCTGGGCCAGCTATTTCCAGAA
TAAATAATGCCGCCTTTGAGGCTGTTGTTGTCACCAACACCATTCCACAAGAGGACAAAA
TGAAGCACTGCTCCAAGATTCAGGTTATCGACATTTCGATGATCTTGGCCGAGGCCATCC
GCAGGACCCACAACGGCGAATCTGTGTCTTACCTGTTCAGCCACGTCCCGCTCTAAGGCC
AGGATGGGAGGTGTGGAGCAAGCCTGAGCTGGCTTCTGACTCGCGTGCATTTGTCTGATG
TTTTCTTTAGCTTTAGAACTGAGTAGTTATATTAATGCAGAAGCATCAGAACTTTGTGTG
CTCCCCAGCCCAGTGTTTCTCCTTCTAAAGCTCTTGACCGTTGATTTCCAGTTTGCTGGG
GAGGGCGGTGGTTTATTTGATCTTTAAGTGCACAGCCTTCAATGAGAAGTATTTTTGTCG
TCTTGACCTGTTCTGATAGGTGACCTTTTCCTTTGTTCTGGCAGTACTTGGAGGCCACAA
CTTAAGTGCATGTTGCCATTCTGGAAGTTCATAGTTTATGTGTTTCGGGGTTGCCAAAGG
TCACGTCAGATTAAAGCCTCTGTGTAAATATAAAATGACAATGCCTATGGACATTCGGAT
AACACCTTGTAGAGAATTAGCCTTTTACTTCTGAGTCAACCTTTAGAAAATGTGTAATAC
CCTGAGTGTTGAATATTTGTTTCAGTGATCAGGTTTCCAATAAACCCTTTGGGCCATTTT
GCTGAATTTAGACCAAATTTTATGTAGCTGAAGGTGGCCACTGACACATCGATTTTGGGT
AAACATTAGACCTATCAGAGGCAGTGTAATTCAGAATTTTTTCTGTGGCCACTTTTGAAA
AACATGACTATCACTTACGTGCAATATCATGTTCTCGAACTCCAAAATTGTGTTCAGCGG
TAGATCTGATTGAGGAACTGTTTTGAGATAGTCTCCAAGTTCACTGTCACATTCACGCTC
TTCTGTGCCCATCCCAGATGCACCTCGTGTCCTGCCATCGTGGTTTTTTATGTCCCTTTT
TTAGCTCTTGCTTTTACTTTGCCTTTTTTCCAGTGGTTTCATGTTGCGGGTTTCCACTTC
TTAAAGTCCCCACCCATTGACTAGTCCGATCACTGTTTTGCTTTTAACAAAATAAAAAGG
TGAACTTTTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|6981418|ref|NP_036766.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|6981418|ref|NP_036766.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               122-1076, gnl|bosTau2|chr4 (9692732-9693686)
               

               
               122-1076, gnl|Hg17|chr7 (17840643-17839689)
               

               
               122-1076, gnl|Mm7|chr12 (32833345-32834299)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-1076, gnl|bosTau2|chr4 (9692732-9693686)
               

               
               122-1076, gnl|Hg17|chr7 (17840643-17839689)
               

               
               122-1076, gnl|Mm7|chr12 (32833345-32834299)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               cly (0.723851)
               

               
               spl (0.429553)
               

               
               cty (0.41632)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               cbl (0.229595)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.723851)
               

               
               spl (0.429553)
               

               
               cty (0.41632)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               cbl (0.229595)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	122-1076, gnl\|bosTau2\|chr4 (9692732-9693686)
	122-1076, gnl\|Hg17\|chr7 (17840643-17839689)
	122-1076, gnl\|Mm7\|chr12 (32833345-32834299)

	cly (0.723851)
	spl (0.429553)
	cty (0.41632)
	csp (0.322373)
	lnt (0.284616)
	cga (0.279096)
	pla (0.267344)
	cbl (0.229595)
	nbm (0.198649)
	col (0.195008)
	fty (0.17584)
	ill (0.175593)
	cje (0.165235)
	nco (0.161734)
	cli (0.152812)
	che (0.136314)
	bla (0.124347)
	med (0.116252)
	eje (0.0988338)