Non-Coding RNA Search

Ss1.1-Lng1-LNG010006E02.5

Sequence:


               
               CGAATTGACTGTGAGCGGAACCTGAGGTGGCTGAGGCCTGCGGGTGGGAGAGGGCCTTAG
TAGAGATGGACAGCCGGATTCCTTACGATGACTACCCGGTGGTTTTCCTGCCTGCCTACG
AGAATCCCCCAGCATGGATTCCTCCTCATGAGAGAGTATACCACCCAGACTACAACAATG
AGTTGACCCAGTTTCTTCCCCGCATCGTCACACTAAAGAAACCCCCTGGAGCTCAGTTGG
GATTTAATATCCGAGGAGGAAAGGCCTCCCAGCTAGGCATTTTCATCTCCAAGGTGATTC
CTGACTCTGATGCACATCGAGCAGGACTTCAGGAAGGGGACCAAGTCCTAGCTGTGAACG
ATGTGGATTTCCAAGATATTGAGCACAGCAAGGCTGTTGAGATCCTGAAGACAGCTCGTG
AAATCAGCATGCGTGTCCGCTTTTTTCCCTACAATTATCATCGCCAGAAAGAGAGGACTG
TGCACTAGAGACTCACAACCCTCAGCCCTCCACATGGAATCTTCTAGGACAAGCTAGCTA
GGCCTCAGGGAAGTCACTTGGGGAGCTCTACTCTCAGCCCCACCCTGGCAGAGGGGAGCG
AGGGGGATGGGGAGACAGCCAGTCTCTGCACTGAGCCAGCCAGCCAACTGCATTTTCTCA
ACTGTACTGCACTTTAAGTTCCCTAGTTTTCCAGGTGAGCTTCATTTCCTGAAAGGAGAA
GGATGGCGATGTCTAGGTACCCTTAGCCTGTGGAGAACCCTTGCTAGAGAAGGCAGCTGA
CATTTGTTGAATACCATGTGCTAGGCAATTCCATGTATGTCATCATTTTCATTAGTGTGT
ATGAATCAATAGAAAAATGGATCTTGGGGACCTCCCATCTTATCTACCTGGCCATCTCAT
CCCGTCCTTATGCTACCAGTCTCATACCTTTTGGAGACTCCAGTGGATCCCTGTTTCCTT
CCTCCTCCCTCCTTCTATCTCCTCCCCCCAGAAAGTAAAAAACAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAATTGACTGTGAGCGGAACCTGAGGTGGCTGAGGCCTGCGGGTGGGAGAGGGCCTTAG
TAGAGATGGACAGCCGGATTCCTTACGATGACTACCCGGTGGTTTTCCTGCCTGCCTACG
AGAATCCCCCAGCATGGATTCCTCCTCATGAGAGAGTATACCACCCAGACTACAACAATG
AGTTGACCCAGTTTCTTCCCCGCATCGTCACACTAAAGAAACCCCCTGGAGCTCAGTTGG
GATTTAATATCCGAGGAGGAAAGGCCTCCCAGCTAGGCATTTTCATCTCCAAGGTGATTC
CTGACTCTGATGCACATCGAGCAGGACTTCAGGAAGGGGACCAAGTCCTAGCTGTGAACG
ATGTGGATTTCCAAGATATTGAGCACAGCAAGGCTGTTGAGATCCTGAAGACAGCTCGTG
AAATCAGCATGCGTGTCCGCTTTTTTCCCTACAATTATCATCGCCAGAAAGAGAGGACTG
TGCACTAGAGACTCACAACCCTCAGCCCTCCACATGGAATCTTCTAGGACAAGCTAGCTA
GGCCTCAGGGAAGTCACTTGGGGAGCTCTACTCTCAGCCCCACCCTGGCAGAGGGGAGCG
AGGGGGATGGGGAGACAGCCAGTCTCTGCACTGAGCCAGCCAGCCAACTGCATTTTCTCA
ACTGTACTGCACTTTAAGTTCCCTAGTTTTCCAGGTGAGCTTCATTTCCTGAAAGGAGAA
GGATGGCGATGTCTAGGTACCCTTAGCCTGTGGAGAACCCTTGCTAGAGAAGGCAGCTGA
CATTTGTTGAATACCATGTGCTAGGCAATTCCATGTATGTCATCATTTTCATTAGTGTGT
ATGAATCAATAGAAAAATGGATCTTGGGGACCTCCCATCTTATCTACCTGGCCATCTCAT
CCCGTCCTTATGCTACCAGTCTCATACCTTTTGGAGACTCCAGTGGATCCCTGTTTCCTT
CCTCCTCCCTCCTTCTATCTCCTCCCCCCAGAAAGTAAAAAACAATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48675923|ref|NP_001001630.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48675923|ref|NP_001001630.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               129-806, gnl|bosTau2|chr15 (23272362-23271689)
               

               
               129-806, gnl|Hg17|chr14 (70867187-70866524)
               

               
               129-806, gnl|Mm7|chrX (95952688-95950462)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-806, gnl|bosTau2|chr15 (23272362-23271689)
               

               
               129-806, gnl|Hg17|chr14 (70867187-70866524)
               

               
               129-806, gnl|Mm7|chrX (95952688-95950462)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               nco (0.485201)
               

               
               duo (0.345602)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.485201)
               

               
               duo (0.345602)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	129-806, gnl\|bosTau2\|chr15 (23272362-23271689)
	129-806, gnl\|Hg17\|chr14 (70867187-70866524)
	129-806, gnl\|Mm7\|chrX (95952688-95950462)

	nco (0.485201)
	duo (0.345602)
	nmm (0.265604)
	ece (0.229305)
	mas (0.210305)
	ill (0.175593)
	ton (0.1755)
	fhi (0.169578)
	hlv (0.139256)
	nca (0.136874)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	ecc (0.115035)
	cty (0.10408)