Non-Coding RNA Search

Ss1.1-Lng1-LNG010006H09.5

Sequence:


               
               ACGCTGTTCCCGGAAACGCTTCCTTCCTACGTATCCGCTGCTGCCTCGGCCGCCGCTGGA
GCTTTGCCTCTCTAGGCCTGTAGGGACTCTTCTCCATGGTTCTGCCTGTCAGCACTGCTT
CGGGGGCCAGCCGGTGAGACTGGGCCGCACTCGGACGCTTTGATTCTCGAGTCCGACACT
GGTGCCGGGGCTGCCCGGGGCCCATGGCGCGGCGGCGGCGGCGCTGACCCAGGCCCGGGC
GGCAGCAGTGCCCCGCGAGCCGGCATGGCGGGCCAGTTCCGCAGCTACGTGTGGGACCCG
TTGCTGATCCTGTCACAGATCGTCCTCATGCAGACTGTCTATTACGGCTCGCTAGGCCTG
TGGCTGGCGCTGGTGGACGGGCTGGTGCGCAGCAGCCCCTCGCTGGACCAGATGTTCGAC
GCCGAGATCCTGGGCTTTTCCACCCCTCCAGGCCGGCTCTCCACCATGTCCTTCGTCCTC
AACGCCCCCACCTGTGCCCTGGGCTTGCTGTACTTCATCCGGCGAGGGAAGCAGTGTCTG
GATTTCACTGTCACTGTCCATTTCTTTCACCTCCTGGGCTGCTGGTTCTACAGCTCCCGT
TTCCCCTCGGCGCTGACCTGGTGGCTGGTCCAGGCCGTGTGCATTGCGCTCATGGCTGTC
ATCGGGGAGTACCTGTGCATGCGGTCGGAGCTCAAGGAGATCCCCCTCAACTCGGCCCCT
AAGTCCAATGTCTAGAGTTGGGTCCTTTGGACACCCCGTTGGGCACTTGACACCCCCGCC
CCCAACACCTGGGGCTGCTCAGACCGTCCAGATGAGGTCCAGCCCAGGCCTGAGAGGAAC
CCTGGAAATGTGAAGTCTCTGTTGGTGTGGGAGAACGAGGCCCCATCAAGAAGGCAGGTA
GCAGGCAGGGTCACAGTGCAAGAATGGCCGCCGTCTACTGAAGCCCTGGTATCTGGGAGG
TCGGCGTGGGGACCTCTTTCAGGGCAATAACAGAATCGGAACCATGTCACTCTTGAGCCA
CCATACCTGTCACCAGCCTGTTATTTTAAAAAGGAAAACAAAACAAAACAAATCAAGGAA
ACCTGATCGGAATGAACCACTCTTCTCATCATCTGACGTACCTCCCTGGGACAGCTGTTA
CCTTTGCCATGTTGCCGAACTGCAGCTATTCTGTTTGGAGAAACGCTTGGTTTCTGGATC
CAGAGCCCCAGAAAGAGATGTAGGCGCAAAGTAGCAGGCTGCTGTCAGGGATGGGGCGGC
AGGAGGAGGCATCAAGCACAAGGAAAACGCACAACCCATGTCCTGCTGTATGCACGTGCG
TGCGCAAGCGCAGCCACAAACCCGTGACTCACTTTCTTCCGGTTCTGTCTACTGGGTCCC
CACCCTGCTGCAGCTTTTGACATAGCAGGCCACAGGACCCAGAGCAGAAGCCCAGCATCG
CTCCCTGTCTAGCCCTTGTGCTAGAGTCACTGCCCGTTCCCTAGGAATGACCAGGCACCG
CAGCCCCCGCTGGCCATCAGTTCTGGCAGTGGTTCCCTTTTCCTGTCTTATTTGGAAGTC
CGCAGTGGGTAGGGTACAGTGGGTGCCCAGACACAGGAAGCCCAGCCTTCCAGCCGGAGG
TGCCCTGATAGTGCCGAGGAGATAGGAATTTGCTACTAAGATTTTTCTTTGGGGTGGAGT
GTTCTCTGTGAGGGGCTTGCAGCTGCCCTTCCTGTGTACATAAATACAGTATTTTCCACG
GTTCTGCCTGTACTTACTTTGTAATGCCACGGTTAGGACTGGGAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCTGTTCCCGGAAACGCTTCCTTCCTACGTATCCGCTGCTGCCTCGGCCGCCGCTGGA
GCTTTGCCTCTCTAGGCCTGTAGGGACTCTTCTCCATGGTTCTGCCTGTCAGCACTGCTT
CGGGGGCCAGCCGGTGAGACTGGGCCGCACTCGGACGCTTTGATTCTCGAGTCCGACACT
GGTGCCGGGGCTGCCCGGGGCCCATGGCGCGGCGGCGGCGGCGCTGACCCAGGCCCGGGC
GGCAGCAGTGCCCCGCGAGCCGGCATGGCGGGCCAGTTCCGCAGCTACGTGTGGGACCCG
TTGCTGATCCTGTCACAGATCGTCCTCATGCAGACTGTCTATTACGGCTCGCTAGGCCTG
TGGCTGGCGCTGGTGGACGGGCTGGTGCGCAGCAGCCCCTCGCTGGACCAGATGTTCGAC
GCCGAGATCCTGGGCTTTTCCACCCCTCCAGGCCGGCTCTCCACCATGTCCTTCGTCCTC
AACGCCCCCACCTGTGCCCTGGGCTTGCTGTACTTCATCCGGCGAGGGAAGCAGTGTCTG
GATTTCACTGTCACTGTCCATTTCTTTCACCTCCTGGGCTGCTGGTTCTACAGCTCCCGT
TTCCCCTCGGCGCTGACCTGGTGGCTGGTCCAGGCCGTGTGCATTGCGCTCATGGCTGTC
ATCGGGGAGTACCTGTGCATGCGGTCGGAGCTCAAGGAGATCCCCCTCAACTCGGCCCCT
AAGTCCAATGTCTAGAGTTGGGTCCTTTGGACACCCCGTTGGGCACTTGACACCCCCGCC
CCCAACACCTGGGGCTGCTCAGACCGTCCAGATGAGGTCCAGCCCAGGCCTGAGAGGAAC
CCTGGAAATGTGAAGTCTCTGTTGGTGTGGGAGAACGAGGCCCCATCAAGAAGGCAGGTA
GCAGGCAGGGTCACAGTGCAAGAATGGCCGCCGTCTACTGAAGCCCTGGTATCTGGGAGG
TCGGCGTGGGGACCTCTTTCAGGGCAATAACAGAATCGGAACCATGTCACTCTTGAGCCA
CCATACCTGTCACCAGCCTGTTATTTTAAAAAGGAAAACAAAACAAAACAAATCAAGGAA
ACCTGATCGGAATGAACCACTCTTCTCATCATCTGACGTACCTCCCTGGGACAGCTGTTA
CCTTTGCCATGTTGCCGAACTGCAGCTATTCTGTTTGGAGAAACGCTTGGTTTCTGGATC
CAGAGCCCCAGAAAGAGATGTAGGCGCAAAGTAGCAGGCTGCTGTCAGGGATGGGGCGGC
AGGAGGAGGCATCAAGCACAAGGAAAACGCACAACCCATGTCCTGCTGTATGCACGTGCG
TGCGCAAGCGCAGCCACAAACCCGTGACTCACTTTCTTCCGGTTCTGTCTACTGGGTCCC
CACCCTGCTGCAGCTTTTGACATAGCAGGCCACAGGACCCAGAGCAGAAGCCCAGCATCG
CTCCCTGTCTAGCCCTTGTGCTAGAGTCACTGCCCGTTCCCTAGGAATGACCAGGCACCG
CAGCCCCCGCTGGCCATCAGTTCTGGCAGTGGTTCCCTTTTCCTGTCTTATTTGGAAGTC
CGCAGTGGGTAGGGTACAGTGGGTGCCCAGACACAGGAAGCCCAGCCTTCCAGCCGGAGG
TGCCCTGATAGTGCCGAGGAGATAGGAATTTGCTACTAAGATTTTTCTTTGGGGTGGAGT
GTTCTCTGTGAGGGGCTTGCAGCTGCCCTTCCTGTGTACATAAATACAGTATTTTCCACG
GTTCTGCCTGTACTTACTTTGTAATGCCACGGTTAGGACTGGGAGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23618848|ref|NP_291020.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23618848|ref|NP_291020.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               765-880, - strand, RNAz p=0.651812
               

               
               1309-1465, - strand, RNAz p=0.99448

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               765-880, - strand, RNAz p=0.651812
               

               
               1309-1465, - strand, RNAz p=0.99448

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               181-426, gnl|bosTau2|chr13 (55473264-55473022)
               

               
               181-426, gnl|Mm7|chr2 (164201946-164202254)
               


               
               486-1785, gnl|bosTau2|chr13 (55470342-55469024)
               

               
               486-1785, gnl|Hg17|chr20 (43428921-43430213)
               

               
               486-1785, gnl|Mm7|chr2 (164205004-164206203)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-426, gnl|bosTau2|chr13 (55473264-55473022)
               

               
               181-426, gnl|Mm7|chr2 (164201946-164202254)
               


               
               486-1785, gnl|bosTau2|chr13 (55470342-55469024)
               

               
               486-1785, gnl|Hg17|chr20 (43428921-43430213)
               

               
               486-1785, gnl|Mm7|chr2 (164205004-164206203)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               pla (0.401016)
               

               
               mcp (0.341297)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               mcp (0.341297)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	765-880, - strand, RNAz p=0.651812
	1309-1465, - strand, RNAz p=0.99448

	181-426, gnl\|bosTau2\|chr13 (55473264-55473022)
	181-426, gnl\|Mm7\|chr2 (164201946-164202254)

	486-1785, gnl\|bosTau2\|chr13 (55470342-55469024)
	486-1785, gnl\|Hg17\|chr20 (43428921-43430213)
	486-1785, gnl\|Mm7\|chr2 (164205004-164206203)

	pla (0.401016)
	mcp (0.341297)
	lnt (0.284616)
	mas (0.210305)
	fbs (0.175346)
	fhi (0.169578)
	cje (0.165235)
	cag (0.151194)
	ute (0.132784)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	eje (0.0988338)