Ss1.1-Lng1-LNG010007A02.5
|
ATAAAAAGGGATGGTCTTTGAAGATGACGGGGCTCTAAAAAGCTTCTAAGCGGCGCCCAG
GAAGCTTTGAGCCACTTTTGATAGGAATCAGGGTTAGCAAAACTTCAGCAGTTCATTGCT
GCTAAGAAGGCGCAGGCTACCCGCTCGCCCTGGGGTGAGCTAGAGTAGACATCTCTATGG
TCGAGTGACCATAGAGAGGTTCACTTCCCATGCGTGGGGCAACGCCTGAGCAGTAGCAGC
TGCGCTGGAAAAATGGCGGAGGAAGAGCAAAGAAAAAAGATCCCTTTGGTTCCAGAAAAT
CTCTTGAAAAAGAGGAAGGCATATCAGGCCCTCAAAGCCACCCAGGCAAAGCAAGCGCTT
TTGCAAAAGAAAGAGCAGAGGAAAGGAAAGGAACTCAAGTTTAAACGACTGGAATGGTTC
CTACATGATTCCTGGCGGCAACTACGTGACAGAGTGCGCCTCAGACGACTGGAAGTGAAG
CCTCATGGCTTGGAAGTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGG
ATCAGTGGGGTGAGTTCAGTGGTGCAGAGGACCATTGCAAGACTTCGCCTGAAGAAGATT
TTCAGCGGTGTCTTTATGCAGGTCACCCCTCAAACCATAAAAACGCTTCGTATAGTGGAA
CCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTTCGGGAACTCATCTTAAAACGG
GGACAAGCCAAGGTCAAGAACAAAATCATTCCTCTGACAGACAACACAGTGATTGAGGAG
CATCTGGGGAAGTTTGGTGTCATTTGCTTGGAAGACCTCATTCATGAAATTGCCTTCCCT
GGGAAGAATTTTCAGGCGATCTCAGGGTTCTTGCGCCCTTTTCAACTCTCAGTGGCCCGT
CATGCTACCAAGAATAGAGTGGGCTTCCTCAAGGAAGTGGGCTCTCCTGGCTACCGTGGT
GAACGCATCAATCAGCTCATCCGGCAATTGAACTAAACCCAGAATACCTGAAAGCACAGT
GCATTGGAAGCATGTGTTTTTGTCTTATGGAATTATCACCCAGTATCTTCAAGGAAGATT
ATTTTCTGCTGTAGCTTCAGAAGCTGGAGTGGAAGAGTCAGAGAAAGATGATGTTCACGG
CAGGCACTTTTCATCCCACCCACAGTGCCATGGAAAAGTTCCTGTGTATTTTCTGCAGTG
ACCGCCATCTACCTCTGAAAAACAGCAAAGGACTCATTCCATGGAGAAGGTAGTCCTGTT
TTGTCACATCTTCTAGGAAAACCCAAGCATGAATACAAGACAGCAGTGGCATACTTGAAC
CTGCGGGCTCCTCGGGTCTTGCTTTGGAAAGAACTTGAAATACAATTAGAAAGAAGCACA
CAAAAATAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATAAAAAGGGATGGTCTTTGAAGATGACGGGGCTCTAAAAAGCTTCTAAGCGGCGCCCAG
GAAGCTTTGAGCCACTTTTGATAGGAATCAGGGTTAGCAAAACTTCAGCAGTTCATTGCT
GCTAAGAAGGCGCAGGCTACCCGCTCGCCCTGGGGTGAGCTAGAGTAGACATCTCTATGG
TCGAGTGACCATAGAGAGGTTCACTTCCCATGCGTGGGGCAACGCCTGAGCAGTAGCAGC
TGCGCTGGAAAAATGGCGGAGGAAGAGCAAAGAAAAAAGATCCCTTTGGTTCCAGAAAAT
CTCTTGAAAAAGAGGAAGGCATATCAGGCCCTCAAAGCCACCCAGGCAAAGCAAGCGCTT
TTGCAAAAGAAAGAGCAGAGGAAAGGAAAGGAACTCAAGTTTAAACGACTGGAATGGTTC
CTACATGATTCCTGGCGGCAACTACGTGACAGAGTGCGCCTCAGACGACTGGAAGTGAAG
CCTCATGGCTTGGAAGTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGG
ATCAGTGGGGTGAGTTCAGTGGTGCAGAGGACCATTGCAAGACTTCGCCTGAAGAAGATT
TTCAGCGGTGTCTTTATGCAGGTCACCCCTCAAACCATAAAAACGCTTCGTATAGTGGAA
CCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTTCGGGAACTCATCTTAAAACGG
GGACAAGCCAAGGTCAAGAACAAAATCATTCCTCTGACAGACAACACAGTGATTGAGGAG
CATCTGGGGAAGTTTGGTGTCATTTGCTTGGAAGACCTCATTCATGAAATTGCCTTCCCT
GGGAAGAATTTTCAGGCGATCTCAGGGTTCTTGCGCCCTTTTCAACTCTCAGTGGCCCGT
CATGCTACCAAGAATAGAGTGGGCTTCCTCAAGGAAGTGGGCTCTCCTGGCTACCGTGGT
GAACGCATCAATCAGCTCATCCGGCAATTGAACTAAACCCAGAATACCTGAAAGCACAGT
GCATTGGAAGCATGTGTTTTTGTCTTATGGAATTATCACCCAGTATCTTCAAGGAAGATT
ATTTTCTGCTGTAGCTTCAGAAGCTGGAGTGGAAGAGTCAGAGAAAGATGATGTTCACGG
CAGGCACTTTTCATCCCACCCACAGTGCCATGGAAAAGTTCCTGTGTATTTTCTGCAGTG
ACCGCCATCTACCTCTGAAAAACAGCAAAGGACTCATTCCATGGAGAAGGTAGTCCTGTT
TTGTCACATCTTCTAGGAAAACCCAAGCATGAATACAAGACAGCAGTGGCATACTTGAAC
CTGCGGGCTCCTCGGGTCTTGCTTTGGAAAGAACTTGAAATACAATTAGAAAGAAGCACA
CAAAAATAAAAAAAAAAAAAAAAA
|
|
gi|55626630|ref|XP_518478.1| |
Protein identifier
|
gi|55626630|ref|XP_518478.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
244-854, gnl|bosTau2|chr11 (16089416-16090024) |
|
244-854, gnl|Hg17|chr7 (107744619-107745228) |
|
244-854, gnl|Mm7|chr11 (46684562-46685240) |
| |
|
959-1274, gnl|bosTau2|chr8 (29423977-29423684) |
|
959-1274, gnl|Hg17|chr3 (140283231-140282926) |
|
959-1274, gnl|Mm7|chr18 (68123457-68123910) |
| |
|
1000-1270, gnl|bosTau2|chr23 (12964352-12964621) |
|
1000-1270, gnl|canFam2|chr12 (14454153-14453866) |
|
1000-1270, gnl|dasNov1|scaffold_10172 (1553-1249) |
|
1000-1270, gnl|echTel1|scaffold_303381 (12363-12645) |
|
1000-1270, gnl|Hg17|chr6 (42962902-42963450) |
|
1000-1270, gnl|hg17|chr7 (51100212-51100522) |
|
1000-1270, gnl|loxAfr1|scaffold_12521 (33933-33640) |
|
1000-1270, gnl|mm7|chr15 (33513478-33513757) |
|
1000-1270, gnl|monDom2|scaffold_0 (198789671-198789967) |
|
1000-1270, gnl|oryCun1|scaffold_129778 (50348-50609) |
|
1000-1270, gnl|panTro1|chr6 (52741425-52741733) |
|
1000-1270, gnl|rheMac2|chr3 (75110791-75110481) |
|
1000-1270, gnl|rn3|chrUn (48532435-48532138) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
244-854, gnl|bosTau2|chr11 (16089416-16090024) |
|
244-854, gnl|Hg17|chr7 (107744619-107745228) |
|
244-854, gnl|Mm7|chr11 (46684562-46685240) |
| |
|
959-1274, gnl|bosTau2|chr8 (29423977-29423684) |
|
959-1274, gnl|Hg17|chr3 (140283231-140282926) |
|
959-1274, gnl|Mm7|chr18 (68123457-68123910) |
| |
|
1000-1270, gnl|bosTau2|chr23 (12964352-12964621) |
|
1000-1270, gnl|canFam2|chr12 (14454153-14453866) |
|
1000-1270, gnl|dasNov1|scaffold_10172 (1553-1249) |
|
1000-1270, gnl|echTel1|scaffold_303381 (12363-12645) |
|
1000-1270, gnl|Hg17|chr6 (42962902-42963450) |
|
1000-1270, gnl|hg17|chr7 (51100212-51100522) |
|
1000-1270, gnl|loxAfr1|scaffold_12521 (33933-33640) |
|
1000-1270, gnl|mm7|chr15 (33513478-33513757) |
|
1000-1270, gnl|monDom2|scaffold_0 (198789671-198789967) |
|
1000-1270, gnl|oryCun1|scaffold_129778 (50348-50609) |
|
1000-1270, gnl|panTro1|chr6 (52741425-52741733) |
|
1000-1270, gnl|rheMac2|chr3 (75110791-75110481) |
|
1000-1270, gnl|rn3|chrUn (48532435-48532138) |
|
mgp (0.692042) |
|
sin (0.524843) |
|
hea (0.408998) |
|
elu (0.385356) |
|
eep (0.367692) |
|
eru (0.360144) |
|
sto (0.359648) |
|
tbr (0.308356) |
|
thg (0.253582) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cli (0.152812) |
|
cag (0.151194) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
ute (0.132784) |
|
kid (0.129735) |
|
sug (0.127291) |
|
ese (0.126502) |
|
bla (0.124347) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
spc (0.113366) |
|
cty (0.10408) |
|
mgp (0.692042) |
|
sin (0.524843) |
|
hea (0.408998) |
|
elu (0.385356) |
|
eep (0.367692) |
|
eru (0.360144) |
|
sto (0.359648) |
|
tbr (0.308356) |
|
thg (0.253582) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cli (0.152812) |
|
cag (0.151194) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
ute (0.132784) |
|
kid (0.129735) |
|
sug (0.127291) |
|
ese (0.126502) |
|
bla (0.124347) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
spc (0.113366) |
|
cty (0.10408) |
