Non-Coding RNA Search

Ss1.1-Lng1-LNG010007H12.5

Sequence:


               
               CCACCCCCAGCCACCCCTACTGCCGCCTGGTTTCTCTTTCTTGAGCTCAGTGGACCCAGG
TGTCTAGGGGGGCCCAGCCTCCTCCCCTCTCTGAGACCCGGAAGCCTGGATCGCCAGCCT
CTTCATCACCCAGGACCCAGAAACCCAGCCTCCACCACCAGCCATGGAGCCCTGTCGGTC
CCTGGCCCTGCTCACGAGCTCCCTGGGCCTGATGTCTGTCTTGGTTGCCCTGAGCACAAA
TTTCTGGTTCGAGGCCCAGGGGCCCCACTTCTCATCTCACTCAGGCCTCTGGCCAAGTGG
GGATGAGGGCTCCATAGAAGGCTACATCCATGTGACCCAGAGCTTTGGCATCCTGGCCGC
CCTGTGGGGCCTGGTCTCTGTGAGCTTCCTGGTCATGTCCTGCATACCCTCGCTGTCCGC
GCCTGGCCGTGGCCCCCTGGTCTCAACTTTCACAGCCTTTGGTGCAGCTCTCTCTCTGAT
GGTGGCTATGACCGTCTACACTGTTGAGCGCTGGAACCAGCCCAGACACTCCCAGATCCA
GAGGAGCTTCTCCTGGTCCTTCTACCTGGGCTGGGTTTCAACAGTCCTCTTTCTCTGTAC
AGGTGGCCTGAGTCTGGGCGCTCACTTTGGTGCCCCTCGGGCCGGCTATGACAGCGTGTG
ACCTGCGCGCTGGCTTTGGGGCTCCCTTCTCGGAAGGCATCATCAGGGACCTCGGGAACA
GCCAGCTCCCTTTCCAGCCCAGACTCCCAGCCTCCACAGCCTCCTCCCTTGGTGTCTTTA
TTCTTTCAACAAACATTTGCTGGAATCTGGTTATTCCCCCCCCCATTTATGCAGCCGCCA
CATAAGTCAACAACTGGCTAGCTCCACGGTAGGTGACACGGTGCCCAGAGAGGAGTCAGA
CCTGTCACCTGCCCTGCCCCCAAGGTGCTTCCCACCCCGTGTGGGCTCGGGCACGACCCC
AGGGCTTTCTCTCCCCTCCGTCTGGCCCTTGGCTCTCTTCTTCGTCCTTTTACCTCTATT
TTTCAGTGTCTTTCTCCTTGTAGCCCTTTTCTTCTTGCTCCTTCTCTGACTTTGTCACCT
TCACCTCAGTCCTCCTTGCTCATTTCATTAATAAATGCACTCCTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCCCAGCCACCCCTACTGCCGCCTGGTTTCTCTTTCTTGAGCTCAGTGGACCCAGG
TGTCTAGGGGGGCCCAGCCTCCTCCCCTCTCTGAGACCCGGAAGCCTGGATCGCCAGCCT
CTTCATCACCCAGGACCCAGAAACCCAGCCTCCACCACCAGCCATGGAGCCCTGTCGGTC
CCTGGCCCTGCTCACGAGCTCCCTGGGCCTGATGTCTGTCTTGGTTGCCCTGAGCACAAA
TTTCTGGTTCGAGGCCCAGGGGCCCCACTTCTCATCTCACTCAGGCCTCTGGCCAAGTGG
GGATGAGGGCTCCATAGAAGGCTACATCCATGTGACCCAGAGCTTTGGCATCCTGGCCGC
CCTGTGGGGCCTGGTCTCTGTGAGCTTCCTGGTCATGTCCTGCATACCCTCGCTGTCCGC
GCCTGGCCGTGGCCCCCTGGTCTCAACTTTCACAGCCTTTGGTGCAGCTCTCTCTCTGAT
GGTGGCTATGACCGTCTACACTGTTGAGCGCTGGAACCAGCCCAGACACTCCCAGATCCA
GAGGAGCTTCTCCTGGTCCTTCTACCTGGGCTGGGTTTCAACAGTCCTCTTTCTCTGTAC
AGGTGGCCTGAGTCTGGGCGCTCACTTTGGTGCCCCTCGGGCCGGCTATGACAGCGTGTG
ACCTGCGCGCTGGCTTTGGGGCTCCCTTCTCGGAAGGCATCATCAGGGACCTCGGGAACA
GCCAGCTCCCTTTCCAGCCCAGACTCCCAGCCTCCACAGCCTCCTCCCTTGGTGTCTTTA
TTCTTTCAACAAACATTTGCTGGAATCTGGTTATTCCCCCCCCCATTTATGCAGCCGCCA
CATAAGTCAACAACTGGCTAGCTCCACGGTAGGTGACACGGTGCCCAGAGAGGAGTCAGA
CCTGTCACCTGCCCTGCCCCCAAGGTGCTTCCCACCCCGTGTGGGCTCGGGCACGACCCC
AGGGCTTTCTCTCCCCTCCGTCTGGCCCTTGGCTCTCTTCTTCGTCCTTTTACCTCTATT
TTTCAGTGTCTTTCTCCTTGTAGCCCTTTTCTTCTTGCTCCTTCTCTGACTTTGTCACCT
TCACCTCAGTCCTCCTTGCTCATTTCATTAATAAATGCACTCCTTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864349|ref|XP_590620.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864349|ref|XP_590620.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               193-321, + strand, RNAz p=0.849039

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-321, + strand, RNAz p=0.849039

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005601, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005601, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-321, gnl|bosTau2|chr18 (50753634-50753311)
               

               
               4-321, gnl|Hg17|chr19 (56567751-56567444)
               

               
               4-321, gnl|Mm7|chr7 (39612725-39613031)
               


               
               600-1033, gnl|bosTau2|chr18 (50752686-50752276)
               

               
               600-1033, gnl|Hg17|chr19 (56566904-56566483)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-321, gnl|bosTau2|chr18 (50753634-50753311)
               

               
               4-321, gnl|Hg17|chr19 (56567751-56567444)
               

               
               4-321, gnl|Mm7|chr7 (39612725-39613031)
               


               
               600-1033, gnl|bosTau2|chr18 (50752686-50752276)
               

               
               600-1033, gnl|Hg17|chr19 (56566904-56566483)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               jej (0.197844)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	4-321, gnl\|bosTau2\|chr18 (50753634-50753311)
	4-321, gnl\|Hg17\|chr19 (56567751-56567444)
	4-321, gnl\|Mm7\|chr7 (39612725-39613031)

	600-1033, gnl\|bosTau2\|chr18 (50752686-50752276)
	600-1033, gnl\|Hg17\|chr19 (56566904-56566483)

	jej (0.197844)
	csp (0.161186)
	cag (0.151194)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)