Non-Coding RNA Search

Ss1.1-Lng1-LNG010008A05.5

Sequence:


               
               CAATACTGAATGCACTTCTCACTTGGGTCCGGCATGATTTGGAACAGAGACGGAAAGATC
TCAGCAAACTTTTGGCTTATATTAGGCTACCTCTTCTTCTTTTCTAGTTCCTAGCAGACA
TGGAAAATAATGCACTTTTTCGAGATGATATAGAATGTCAGAAACTAATTATGGAAGCAA
TGAAGTATCATTTACTACCAGAGAGACGGCCTATGTTACAGAGCCCTCGGACAAAACCTA
GGAAGTCAACTGTTGGTACATTATTTGCAGTTGGAGGAATGGATTCAACAAAAGGAGCAA
CAAGCATTGAGAAGTACGATCTCCGTACAAATATGTGGACTCCTGTAGCAAATATGAATG
GGAGGAGGCTACAGTTTGGCGTGGCGGTCTTAGATGACAAACTGTATGTGGTTGGAGGAA
GAGATGGACTGAAGACTTTGAATACCGTAGAGTGCTACAACCCCAAAACGAAAACGTGGA
GTGTCATGCCTCCTATGTCTACACATAGGCATGGCCTTGGCGTGGCTGTATTGGAAGGCC
CTATGTATGCAGTAGGAGGACATGATGGCTGGAGCTACCTGAATACAGTGGAGAGATGGG
ACCCTCAGGCTCGCCAGTGGAATTTTGTTGCCACCATGTCCACTCCCAGGAGCACAGTAG
GTGTGGCTGTACTAAGTGGAAAACTTTATGCAGTCGGTGGTCGTGATGGAAGTTCTTGTC
TCAAGTCAGTAGAATGTTTTGATCCTCATACTAATAAATGGACACTCTGTGCACAAATGT
CTAAAAGGAGAGGCGGCGTAGGAGTCACCACGTGGAATGGATTGCTCTATGCCATCGGAG
GGCATGATGCGCCCGCGTCCAACTTGACCTCCAGACTCTCAGACTGCGTGGAGAGGTATG
ATCCCAAAACAGATATGTGGACAGCAGTGGCATCTATGAGCATCAGCAGAGATGCTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATACTGAATGCACTTCTCACTTGGGTCCGGCATGATTTGGAACAGAGACGGAAAGATC
TCAGCAAACTTTTGGCTTATATTAGGCTACCTCTTCTTCTTTTCTAGTTCCTAGCAGACA
TGGAAAATAATGCACTTTTTCGAGATGATATAGAATGTCAGAAACTAATTATGGAAGCAA
TGAAGTATCATTTACTACCAGAGAGACGGCCTATGTTACAGAGCCCTCGGACAAAACCTA
GGAAGTCAACTGTTGGTACATTATTTGCAGTTGGAGGAATGGATTCAACAAAAGGAGCAA
CAAGCATTGAGAAGTACGATCTCCGTACAAATATGTGGACTCCTGTAGCAAATATGAATG
GGAGGAGGCTACAGTTTGGCGTGGCGGTCTTAGATGACAAACTGTATGTGGTTGGAGGAA
GAGATGGACTGAAGACTTTGAATACCGTAGAGTGCTACAACCCCAAAACGAAAACGTGGA
GTGTCATGCCTCCTATGTCTACACATAGGCATGGCCTTGGCGTGGCTGTATTGGAAGGCC
CTATGTATGCAGTAGGAGGACATGATGGCTGGAGCTACCTGAATACAGTGGAGAGATGGG
ACCCTCAGGCTCGCCAGTGGAATTTTGTTGCCACCATGTCCACTCCCAGGAGCACAGTAG
GTGTGGCTGTACTAAGTGGAAAACTTTATGCAGTCGGTGGTCGTGATGGAAGTTCTTGTC
TCAAGTCAGTAGAATGTTTTGATCCTCATACTAATAAATGGACACTCTGTGCACAAATGT
CTAAAAGGAGAGGCGGCGTAGGAGTCACCACGTGGAATGGATTGCTCTATGCCATCGGAG
GGCATGATGCGCCCGCGTCCAACTTGACCTCCAGACTCTCAGACTGCGTGGAGAGGTATG
ATCCCAAAACAGATATGTGGACAGCAGTGGCATCTATGAGCATCAGCAGAGATGCTGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29476994|gb|AAH48262.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29476994|gb|AAH48262.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               385-628, gnl|bosTau2|chr1 (16516699-16516942)
               

               
               385-628, gnl|Hg17|chr22 (22594969-22595212)
               

               
               385-628, gnl|Mm7|chr5 (64513685-64515961)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               385-628, gnl|bosTau2|chr1 (16516699-16516942)
               

               
               385-628, gnl|Hg17|chr22 (22594969-22595212)
               

               
               385-628, gnl|Mm7|chr5 (64513685-64515961)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	385-628, gnl\|bosTau2\|chr1 (16516699-16516942)
	385-628, gnl\|Hg17\|chr22 (22594969-22595212)
	385-628, gnl\|Mm7\|chr5 (64513685-64515961)