Ss1.1-Lng1-LNG010008B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGGGCGGGCCGGCGCGCCGGGGCAGTGAGTCGGTCTCGCAGACTGCTGTGGCCCGAA GTGCATTTCCCTTAGTGTTGGTCCAGGAGGAGGAAAGATGGTGCTGGATCTGGATTTGTT TCGGGTAGATAAAGGAGGGGACCCAGCCCTCATCCGAGAGTCGCAGGAGAAGCGCTTCAA GGACCCAGGACTAGTGGATCAGCTGGTGAAGGCAGACAGCGAGTGGCGACGATGCAGATT TCGGGCAGACAATCTGAACAAGCTGAAGAACCTATGCAGCAGGACAATTGGAGAGAAAAT GAAGAAGAAAGAGGCAGTAGGAAATGATGAGTCCCTTCCAGAAGATGTATTAAATCTTGA TGATCTTACTGCAGACACTTTAACTAACCTCAAAGTCGCGCAAATCAAAAAAGTCCGACT CCTCATTGACGAGGCCATCCTAAAGTGTGATGCTGAGCGGATAAAGCTGGAAGCAGAGCG GTTTGAGAACCTTCGAGAGATCGGGAATCTTCTGCACCCCTCTGTGCCCATCAGCAATGA TGAGGATGCCGACAACAAAGTAGAGAGGATCTGGGGTGACTGTTCGGTCAGGAAGAAGTA CTCTCACGTGGACCTCGTGGTGATGGTGGATGGCTTCGAAGGCGAAAAGGGGGCTGTGGT AGCTGGGAGTCGAGGGTACTTCCTGAAGGGGGTCCTGGTGTTCCTGGAACAGGCGCTCAT CCAGTATGCCCTTCGCACTTTGGGAAGTCGGGGCTACACTCCCATTTATACGCCCTTCTT CATGAGGAAGGAGGTCATGCAGGAAGTGGCACAGCTCAGCCAGTTTGATGAAGAACTTTA TAAGGTGATTGGCAAAGGCAGCGAAAAGTCTGACGACAACTCCTACGAGGAGAAGTATCT GATTGCCACCTCTGAGCAGCCCATTGCCGCCCTCCACCGGGACGAGTGGCTTCGGCCGGA GGACTTGCCAATCAAGTATGCTGGCCTGTCCACCTGCTTTCGCCAGGAGGTGGGCTCCCA CGGCCGCGACACCCGCGGCATCTTTCGAGTCCATCAGTTTGAGAAGATTGAACAGTTTGT CTACTCATCGCCACACGACAACAAGTCCTGGGAGATGTTTGAGGAGATGATCGGAACCGC GGAGGAGTTCTACCAGTCCCTGGGGATCCCCTACCACATCGTGAATATCGTCTCAGGTTC TTTGAATCATGCTGCCAGTAAGAAGCTTGACCTGGAGGCCTGGTTTCCGGGCTCGGGAGC CTTCCGTGAGTTAGTCTCCTGTTCTAACTGCACCGACTATCAGGCTCGCCGGCTCCGAAT CCGATACGGGCAAACCAAGAAGATGATGGACAAGGTGGAGTTTGTCCACATGCTTAACGC CACGATGTGCGCCACGACCCGCACCATCTGTGCCATCCTGGAGAACTACCAGACAGAGAA GGGCATCGTCGTGCCAGAGAAATTGAAGGAATTCATGCCGCCAGGTCTCCAAGAACTGAT CCCCTTTGTGAAGCCTGCGCCTATTGACCAGGAGCCATCTAAGAAGCAGAAGAAGCAGCA TGAGGGCAGCAAAAAAAAAGGGGGAGCCAGAGAGGTTGCCCTGGAAAGCCAGCTGCAGAG CCTGGAGGTCACTGATGCCTGAACATTCCTCTGTCCCACCTTGCCAGGCTTTCACTTCCA GCAGCTGGAATCTCCGCCTGCCCACAGGCAGGAAGCCAAGCACTCACGCATCACCCACCC ATCCGACTACATTGCTAAAAGGGGAACCATCTGCCACGTACAGTGTGCAGCGTTCCTCTT TTCTCGCCTGGGCATGAGATCCAATCACTGGTGACTGATGAAACCATGTAATAAAGCATC TCTGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGGGCGGGCCGGCGCGCCGGGGCAGTGAGTCGGTCTCGCAGACTGCTGTGGCCCGAA GTGCATTTCCCTTAGTGTTGGTCCAGGAGGAGGAAAGATGGTGCTGGATCTGGATTTGTT TCGGGTAGATAAAGGAGGGGACCCAGCCCTCATCCGAGAGTCGCAGGAGAAGCGCTTCAA GGACCCAGGACTAGTGGATCAGCTGGTGAAGGCAGACAGCGAGTGGCGACGATGCAGATT TCGGGCAGACAATCTGAACAAGCTGAAGAACCTATGCAGCAGGACAATTGGAGAGAAAAT GAAGAAGAAAGAGGCAGTAGGAAATGATGAGTCCCTTCCAGAAGATGTATTAAATCTTGA TGATCTTACTGCAGACACTTTAACTAACCTCAAAGTCGCGCAAATCAAAAAAGTCCGACT CCTCATTGACGAGGCCATCCTAAAGTGTGATGCTGAGCGGATAAAGCTGGAAGCAGAGCG GTTTGAGAACCTTCGAGAGATCGGGAATCTTCTGCACCCCTCTGTGCCCATCAGCAATGA TGAGGATGCCGACAACAAAGTAGAGAGGATCTGGGGTGACTGTTCGGTCAGGAAGAAGTA CTCTCACGTGGACCTCGTGGTGATGGTGGATGGCTTCGAAGGCGAAAAGGGGGCTGTGGT AGCTGGGAGTCGAGGGTACTTCCTGAAGGGGGTCCTGGTGTTCCTGGAACAGGCGCTCAT CCAGTATGCCCTTCGCACTTTGGGAAGTCGGGGCTACACTCCCATTTATACGCCCTTCTT CATGAGGAAGGAGGTCATGCAGGAAGTGGCACAGCTCAGCCAGTTTGATGAAGAACTTTA TAAGGTGATTGGCAAAGGCAGCGAAAAGTCTGACGACAACTCCTACGAGGAGAAGTATCT GATTGCCACCTCTGAGCAGCCCATTGCCGCCCTCCACCGGGACGAGTGGCTTCGGCCGGA GGACTTGCCAATCAAGTATGCTGGCCTGTCCACCTGCTTTCGCCAGGAGGTGGGCTCCCA CGGCCGCGACACCCGCGGCATCTTTCGAGTCCATCAGTTTGAGAAGATTGAACAGTTTGT CTACTCATCGCCACACGACAACAAGTCCTGGGAGATGTTTGAGGAGATGATCGGAACCGC GGAGGAGTTCTACCAGTCCCTGGGGATCCCCTACCACATCGTGAATATCGTCTCAGGTTC TTTGAATCATGCTGCCAGTAAGAAGCTTGACCTGGAGGCCTGGTTTCCGGGCTCGGGAGC CTTCCGTGAGTTAGTCTCCTGTTCTAACTGCACCGACTATCAGGCTCGCCGGCTCCGAAT CCGATACGGGCAAACCAAGAAGATGATGGACAAGGTGGAGTTTGTCCACATGCTTAACGC CACGATGTGCGCCACGACCCGCACCATCTGTGCCATCCTGGAGAACTACCAGACAGAGAA GGGCATCGTCGTGCCAGAGAAATTGAAGGAATTCATGCCGCCAGGTCTCCAAGAACTGAT CCCCTTTGTGAAGCCTGCGCCTATTGACCAGGAGCCATCTAAGAAGCAGAAGAAGCAGCA TGAGGGCAGCAAAAAAAAAGGGGGAGCCAGAGAGGTTGCCCTGGAAAGCCAGCTGCAGAG CCTGGAGGTCACTGATGCCTGAACATTCCTCTGTCCCACCTTGCCAGGCTTTCACTTCCA GCAGCTGGAATCTCCGCCTGCCCACAGGCAGGAAGCCAAGCACTCACGCATCACCCACCC ATCCGACTACATTGCTAAAAGGGGAACCATCTGCCACGTACAGTGTGCAGCGTTCCTCTT TTCTCGCCTGGGCATGAGATCCAATCACTGGTGACTGATGAAACCATGTAATAAAGCATC TCTGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 78-197, + strand, RNAz p=0.928319 | |
| 572-1640, + strand, RNAz p=0.920553 | |
| 843-961, - strand, RNAz p=0.554555 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 78-197, + strand, RNAz p=0.928319 | |
| 572-1640, + strand, RNAz p=0.920553 | |
| 843-961, - strand, RNAz p=0.554555 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR626109, + |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-245, gnl|bosTau2|chr3 (30562380-30562134) | |
| 1-245, gnl|Hg17|chr1 (109468558-109468804) | |
| 1-245, gnl|Mm7|chr3 (108263506-108263273) | |
| 514-689, gnl|bosTau2|chr3 (30549084-30548909) | |
| 514-689, gnl|Hg17|chr1 (109485512-109485686) | |
| 514-689, gnl|Mm7|chr3 (108251490-108251305) | |
| 843-1066, gnl|bosTau2|chr3 (30545343-30545120) | |
| 843-1066, gnl|canFam2|chr6 (45647127-45646867) | |
| 843-1066, gnl|danRer3|chr23 (51113866-51114097) | |
| 843-1066, gnl|dasNov1|scaffold_46207 (9956-9736) | |
| 843-1066, gnl|echTel1|scaffold_319338 (105363-105104) | |
| 843-1066, gnl|fr1|chrUn (190153329-190153100) | |
| 843-1066, gnl|hg17|chr1 (109489842-109490102) | |
| 843-1066, gnl|Hg17|chr1 (109489872-109490095) | |
| 843-1066, gnl|loxAfr1|scaffold_1838 (76438-76698) | |
| 843-1066, gnl|mm7|chr3 (108247779-108247524) | |
| 843-1066, gnl|Mm7|chr3 (108247752-108247529) | |
| 843-1066, gnl|monDom2|scaffold_0 (7457337-7457107) | |
| 843-1066, gnl|oryCun1|scaffold_209665 (77553-77812) | |
| 843-1066, gnl|panTro1|chr1 (108413574-108413834) | |
| 843-1066, gnl|rheMac2|chr1 (112291535-112291795) | |
| 843-1066, gnl|rn3|chr2 (203961214-203960959) | |
| 843-1066, gnl|tetNig1|chrUn_random (79135425-79135686) | |
| 843-1066, gnl|xenTro1|scaffold_566 (829243-829484) | |
| 1194-1367, gnl|bosTau2|chr3 (30544139-30543967) | |
| 1194-1367, gnl|canFam2|chr6 (45645888-45645700) | |
| 1194-1367, gnl|danRer3|chr23 (51115262-51115435) | |
| 1194-1367, gnl|dasNov1|scaffold_95690 (8311-8122) | |
| 1194-1367, gnl|echTel1|scaffold_319338 (104025-103837) | |
| 1194-1367, gnl|fr1|chrUn (190152434-190152246) | |
| 1194-1367, gnl|galGal2|chrUn (28753351-28753513) | |
| 1194-1367, gnl|hg17|chr1 (109491033-109491221) | |
| 1194-1367, gnl|Hg17|chr1 (109491052-109491223) | |
| 1194-1367, gnl|loxAfr1|scaffold_1838 (78015-78203) | |
| 1194-1367, gnl|mm7|chr3 (108246640-108246455) | |
| 1194-1367, gnl|Mm7|chr3 (108246622-108246450) | |
| 1194-1367, gnl|monDom2|scaffold_0 (7455844-7455656) | |
| 1194-1367, gnl|oryCun1|scaffold_209665 (78694-78882) | |
| 1194-1367, gnl|panTro1|chr1 (108414765-108414953) | |
| 1194-1367, gnl|rheMac2|chr1 (112292726-112292914) | |
| 1194-1367, gnl|rn3|chr2 (203960059-203959874) | |
| 1194-1367, gnl|tetNig1|chrUn_random (79136020-79136208) | |
| 1482-1869, gnl|bosTau2|chr3 (30543053-30542670) | |
| 1482-1869, gnl|Hg17|chr1 (109492392-109492782) | |
| 1482-1869, gnl|Mm7|chr3 (108245272-108244904) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-245, gnl|bosTau2|chr3 (30562380-30562134) | |
| 1-245, gnl|Hg17|chr1 (109468558-109468804) | |
| 1-245, gnl|Mm7|chr3 (108263506-108263273) | |
| 514-689, gnl|bosTau2|chr3 (30549084-30548909) | |
| 514-689, gnl|Hg17|chr1 (109485512-109485686) | |
| 514-689, gnl|Mm7|chr3 (108251490-108251305) | |
| 843-1066, gnl|bosTau2|chr3 (30545343-30545120) | |
| 843-1066, gnl|canFam2|chr6 (45647127-45646867) | |
| 843-1066, gnl|danRer3|chr23 (51113866-51114097) | |
| 843-1066, gnl|dasNov1|scaffold_46207 (9956-9736) | |
| 843-1066, gnl|echTel1|scaffold_319338 (105363-105104) | |
| 843-1066, gnl|fr1|chrUn (190153329-190153100) | |
| 843-1066, gnl|hg17|chr1 (109489842-109490102) | |
| 843-1066, gnl|Hg17|chr1 (109489872-109490095) | |
| 843-1066, gnl|loxAfr1|scaffold_1838 (76438-76698) | |
| 843-1066, gnl|mm7|chr3 (108247779-108247524) | |
| 843-1066, gnl|Mm7|chr3 (108247752-108247529) | |
| 843-1066, gnl|monDom2|scaffold_0 (7457337-7457107) | |
| 843-1066, gnl|oryCun1|scaffold_209665 (77553-77812) | |
| 843-1066, gnl|panTro1|chr1 (108413574-108413834) | |
| 843-1066, gnl|rheMac2|chr1 (112291535-112291795) | |
| 843-1066, gnl|rn3|chr2 (203961214-203960959) | |
| 843-1066, gnl|tetNig1|chrUn_random (79135425-79135686) | |
| 843-1066, gnl|xenTro1|scaffold_566 (829243-829484) | |
| 1194-1367, gnl|bosTau2|chr3 (30544139-30543967) | |
| 1194-1367, gnl|canFam2|chr6 (45645888-45645700) | |
| 1194-1367, gnl|danRer3|chr23 (51115262-51115435) | |
| 1194-1367, gnl|dasNov1|scaffold_95690 (8311-8122) | |
| 1194-1367, gnl|echTel1|scaffold_319338 (104025-103837) | |
| 1194-1367, gnl|fr1|chrUn (190152434-190152246) | |
| 1194-1367, gnl|galGal2|chrUn (28753351-28753513) | |
| 1194-1367, gnl|hg17|chr1 (109491033-109491221) | |
| 1194-1367, gnl|Hg17|chr1 (109491052-109491223) | |
| 1194-1367, gnl|loxAfr1|scaffold_1838 (78015-78203) | |
| 1194-1367, gnl|mm7|chr3 (108246640-108246455) | |
| 1194-1367, gnl|Mm7|chr3 (108246622-108246450) | |
| 1194-1367, gnl|monDom2|scaffold_0 (7455844-7455656) | |
| 1194-1367, gnl|oryCun1|scaffold_209665 (78694-78882) | |
| 1194-1367, gnl|panTro1|chr1 (108414765-108414953) | |
| 1194-1367, gnl|rheMac2|chr1 (112292726-112292914) | |
| 1194-1367, gnl|rn3|chr2 (203960059-203959874) | |
| 1194-1367, gnl|tetNig1|chrUn_random (79136020-79136208) | |
| 1482-1869, gnl|bosTau2|chr3 (30543053-30542670) | |
| 1482-1869, gnl|Hg17|chr1 (109492392-109492782) | |
| 1482-1869, gnl|Mm7|chr3 (108245272-108244904) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fcc (0.593354) | |
| ill (0.526778) | |
| cly (0.482567) | |
| hyp (0.42851) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| col (0.195008) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.593354) | |
| ill (0.526778) | |
| cly (0.482567) | |
| hyp (0.42851) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| col (0.195008) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) |