Ss1.1-Lng1-LNG010008B10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGGGCCAGCGGCCCGGGATAAATACAGCGGCCGGGACCTCAGCGCAGCACTCCAGCGA GCCCCGCGCGCCCGGCGACCCTCCACAGCACCCTTCGCGAGCGCAGGGACCCCGCTCCGC ACCCCAGATCCCGCAGCCCTCCACACAGGTTCCCTGAAGCCGCTCCCTCACCGGCCCCAG CACCCCCGTCCGAGCATCCGCCCAGGGCGGCGCGTCCCCGAGGCCGCCCGGCCGGTCCTG TCCATCAGTCCGTCGCGTCCGTTTGCAGTGCCATGCCATTCCTCGGGCAGGACTGGCGGT CCCCCGGGCAGAGCTGGGTGAAGACAGCCGATGGCTGGAAGCGCTTCCTGGATGAGAAGA GTGGCAGCTTCGTGAGCGACCTCAGCAGTTACTGCAACAAGGAAGTATACAATAAGGAGA ATCTTTTCAACAGCCTGAACTATGATGTTGCGGCCAAGAAGAGAAAGAAGGACATGCTGA ACAGCAAAACCAAAACTCAGTATTTCCACCAAGAAAAATGGATCTATGTTCACAAAGGAA GTACTAAAGAGCGCCATGGATACTGCACTTTGGGGGAAGCTTTCAACAGGCTGGACTTCT CGACTGCCATTCTAGATTCCAGAAGATTCAACTATGTCGTACGGCTGTTGGAACTGATAG CGAAGTCACAGCTCACATCCCTGAGTGGCATTGCCCAAAAGAACTTCATGAACATTTTGG AAAAAGTGGTACTGAAAGTGCTTGAAGACCAGCAAAACATCAGACTGATAAGGGAACTCC TCCAGACCCTCTACACGTCCCTGTGCACACTGGTCCAGAGAGTCGGCAAGTCCGTGCTGG TCGGGAACATTAACATGTGGGTGTATCGGATGGAGACGATTCTACACTGGCAGCAGCAGC TGAACAACATCCAGATCACCAGGCCTGCCTTCAAAGGCCTCACCTTCACCGACCTGCCTC TGTGTTTGCAACTGAACATCATGCAAAGGCTAAGTGATGGCCGGGACCTGGTCAGCCTGG GCCAGGTGGCCCCCGACCTGCACGTGCTCAGCGAGGACCGGCTCCTGTGGAAGAAACTCT GCCAGTACCACTTCTCCGAGCGGCAGATCCGCAAGCGATTAATTTTGTCAGACAAAGGAC AGCTGGATTGGAAGAAGATGTATTTTAAACTTGTGCGATGCTACCCTCGGAAAGAGCAAT ATGGAGACACCCTTCAGCTCTGCAGACACTGCCACATTCTTTCCTGGAAGGGCACCGATC ACCCCTGCACAGCCAATAACCCAGAGAGCTGCTCCGTGTCGCTGTCACCCCAGGACTTTA TCAACCTGTTCAAGTTCTGAATCCCGGCTCATGACCGCACCGCAGAAGGGTTTCCCTGCT GATTGGATGGCTGGGGATACAGAATTTGGATGCTTCATTTGTAAATAGCGTACATTTTAA ACATTGGCTCGAAACTTCTGAGATAAGTCATTGAGAGGACACTGGCGGGGAATTTAAGCG TATGGACTTCTCGTTAGAATTGGTATGGAAAAGCAGGAATACTGTAAATAAACTGTTTTT TCCCTAAAGATTTGCCAGCAAGACTATGAGGTAGGAGTTCTATTTCATGGGTGAAAATGG AATTTTCTTGATGTTCACGGAAACGCCTTTACAGATCCCTAGAGATGTGGAAGAAGAGGG CAAAACTCGAACACAAGATAGGATGCTCTTTGTTTACAATGTGAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGGGCCAGCGGCCCGGGATAAATACAGCGGCCGGGACCTCAGCGCAGCACTCCAGCGA GCCCCGCGCGCCCGGCGACCCTCCACAGCACCCTTCGCGAGCGCAGGGACCCCGCTCCGC ACCCCAGATCCCGCAGCCCTCCACACAGGTTCCCTGAAGCCGCTCCCTCACCGGCCCCAG CACCCCCGTCCGAGCATCCGCCCAGGGCGGCGCGTCCCCGAGGCCGCCCGGCCGGTCCTG TCCATCAGTCCGTCGCGTCCGTTTGCAGTGCCATGCCATTCCTCGGGCAGGACTGGCGGT CCCCCGGGCAGAGCTGGGTGAAGACAGCCGATGGCTGGAAGCGCTTCCTGGATGAGAAGA GTGGCAGCTTCGTGAGCGACCTCAGCAGTTACTGCAACAAGGAAGTATACAATAAGGAGA ATCTTTTCAACAGCCTGAACTATGATGTTGCGGCCAAGAAGAGAAAGAAGGACATGCTGA ACAGCAAAACCAAAACTCAGTATTTCCACCAAGAAAAATGGATCTATGTTCACAAAGGAA GTACTAAAGAGCGCCATGGATACTGCACTTTGGGGGAAGCTTTCAACAGGCTGGACTTCT CGACTGCCATTCTAGATTCCAGAAGATTCAACTATGTCGTACGGCTGTTGGAACTGATAG CGAAGTCACAGCTCACATCCCTGAGTGGCATTGCCCAAAAGAACTTCATGAACATTTTGG AAAAAGTGGTACTGAAAGTGCTTGAAGACCAGCAAAACATCAGACTGATAAGGGAACTCC TCCAGACCCTCTACACGTCCCTGTGCACACTGGTCCAGAGAGTCGGCAAGTCCGTGCTGG TCGGGAACATTAACATGTGGGTGTATCGGATGGAGACGATTCTACACTGGCAGCAGCAGC TGAACAACATCCAGATCACCAGGCCTGCCTTCAAAGGCCTCACCTTCACCGACCTGCCTC TGTGTTTGCAACTGAACATCATGCAAAGGCTAAGTGATGGCCGGGACCTGGTCAGCCTGG GCCAGGTGGCCCCCGACCTGCACGTGCTCAGCGAGGACCGGCTCCTGTGGAAGAAACTCT GCCAGTACCACTTCTCCGAGCGGCAGATCCGCAAGCGATTAATTTTGTCAGACAAAGGAC AGCTGGATTGGAAGAAGATGTATTTTAAACTTGTGCGATGCTACCCTCGGAAAGAGCAAT ATGGAGACACCCTTCAGCTCTGCAGACACTGCCACATTCTTTCCTGGAAGGGCACCGATC ACCCCTGCACAGCCAATAACCCAGAGAGCTGCTCCGTGTCGCTGTCACCCCAGGACTTTA TCAACCTGTTCAAGTTCTGAATCCCGGCTCATGACCGCACCGCAGAAGGGTTTCCCTGCT GATTGGATGGCTGGGGATACAGAATTTGGATGCTTCATTTGTAAATAGCGTACATTTTAA ACATTGGCTCGAAACTTCTGAGATAAGTCATTGAGAGGACACTGGCGGGGAATTTAAGCG TATGGACTTCTCGTTAGAATTGGTATGGAAAAGCAGGAATACTGTAAATAAACTGTTTTT TCCCTAAAGATTTGCCAGCAAGACTATGAGGTAGGAGTTCTATTTCATGGGTGAAAATGG AATTTTCTTGATGTTCACGGAAACGCCTTTACAGATCCCTAGAGATGTGGAAGAAGAGGG CAAAACTCGAACACAAGATAGGATGCTCTTTGTTTACAATGTGAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-388, gnl|bosTau2|chr14 (7650307-7650685) | |
| 1-388, gnl|Hg17|chr8 (124622673-124622320) | |
| 1-388, gnl|Mm7|chr15 (58280227-58279832) | |
| 737-919, gnl|bosTau2|chr1 (100119432-100119250) | |
| 737-919, gnl|Hg17|chr8 (391267-391449) | |
| 737-919, gnl|Mm7|chr8 (13903474-13903656) | |
| 923-1106, gnl|bosTau2|chr14 (7680159-7680342) | |
| 923-1106, gnl|canFam2|chr13 (24847969-24848110) | |
| 923-1106, gnl|danRer3|chr15 (12243696-12243561) | |
| 923-1106, gnl|echTel1|scaffold_244082 (1148-1288) | |
| 923-1106, gnl|fr1|chrUn (55630720-55630862) | |
| 923-1106, gnl|galGal2|chr2 (145724898-145724763) | |
| 923-1106, gnl|hg17|chr8 (124587806-124587947) | |
| 923-1106, gnl|Hg17|chr8 (124587996-124587813) | |
| 923-1106, gnl|loxAfr1|scaffold_586 (53374-53515) | |
| 923-1106, gnl|mm7|chr15 (58249411-58249552) | |
| 923-1106, gnl|Mm7|chr15 (58249601-58249418) | |
| 923-1106, gnl|monDom2|scaffold_3 (31244506-31244368) | |
| 923-1106, gnl|oryCun1|scaffold_214405 (56174-56315) | |
| 923-1106, gnl|panTro1|chr7 (127311735-127311876) | |
| 923-1106, gnl|rheMac2|chr8 (126082169-126082310) | |
| 923-1106, gnl|rn3|chr7 (94946374-94946515) | |
| 923-1106, gnl|tetNig1|chr8 (3432211-3432353) | |
| 923-1106, gnl|xenTro1|scaffold_890 (257390-257527) | |
| 1249-1728, gnl|bosTau2|chr14 (7682166-7682654) | |
| 1249-1728, gnl|Hg17|chr8 (124584885-124584396) | |
| 1249-1728, gnl|Mm7|chr15 (58246893-58246427) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-388, gnl|bosTau2|chr14 (7650307-7650685) | |
| 1-388, gnl|Hg17|chr8 (124622673-124622320) | |
| 1-388, gnl|Mm7|chr15 (58280227-58279832) | |
| 737-919, gnl|bosTau2|chr1 (100119432-100119250) | |
| 737-919, gnl|Hg17|chr8 (391267-391449) | |
| 737-919, gnl|Mm7|chr8 (13903474-13903656) | |
| 923-1106, gnl|bosTau2|chr14 (7680159-7680342) | |
| 923-1106, gnl|canFam2|chr13 (24847969-24848110) | |
| 923-1106, gnl|danRer3|chr15 (12243696-12243561) | |
| 923-1106, gnl|echTel1|scaffold_244082 (1148-1288) | |
| 923-1106, gnl|fr1|chrUn (55630720-55630862) | |
| 923-1106, gnl|galGal2|chr2 (145724898-145724763) | |
| 923-1106, gnl|hg17|chr8 (124587806-124587947) | |
| 923-1106, gnl|Hg17|chr8 (124587996-124587813) | |
| 923-1106, gnl|loxAfr1|scaffold_586 (53374-53515) | |
| 923-1106, gnl|mm7|chr15 (58249411-58249552) | |
| 923-1106, gnl|Mm7|chr15 (58249601-58249418) | |
| 923-1106, gnl|monDom2|scaffold_3 (31244506-31244368) | |
| 923-1106, gnl|oryCun1|scaffold_214405 (56174-56315) | |
| 923-1106, gnl|panTro1|chr7 (127311735-127311876) | |
| 923-1106, gnl|rheMac2|chr8 (126082169-126082310) | |
| 923-1106, gnl|rn3|chr7 (94946374-94946515) | |
| 923-1106, gnl|tetNig1|chr8 (3432211-3432353) | |
| 923-1106, gnl|xenTro1|scaffold_890 (257390-257527) | |
| 1249-1728, gnl|bosTau2|chr14 (7682166-7682654) | |
| 1249-1728, gnl|Hg17|chr8 (124584885-124584396) | |
| 1249-1728, gnl|Mm7|chr15 (58246893-58246427) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| bla (0.994777) | |
| ldo (0.679018) | |
| ste (0.676041) | |
| gul (0.532765) | |
| aor (0.390549) | |
| ton (0.351) | |
| isp (0.300752) | |
| sug (0.254582) | |
| hea (0.204499) | |
| nje (0.16592) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| eru (0.120048) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.994777) | |
| ldo (0.679018) | |
| ste (0.676041) | |
| gul (0.532765) | |
| aor (0.390549) | |
| ton (0.351) | |
| isp (0.300752) | |
| sug (0.254582) | |
| hea (0.204499) | |
| nje (0.16592) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| eru (0.120048) |