Non-Coding RNA Search

Ss1.1-Lng1-LNG010008G06.5

Sequence:


               
               ATAGCCCCGACATCCGCATTACCAGCTTTGTCTCAGGGCCGCATTGATAATCATTAATTC
TGCCTAAAGGACCGAGGAAAAGTGCCTGCAAAAGGGCAAGAATATCTCAGCATGGGCATA
AGTAGCTTGAAATTGCTGAAGTATGTCCTGTTTTTCTTCAACTTGCTCTTTTGGTTCTGT
GGCTGTTGCATTTTGGGCTTTGGGATCTACCTCCTGATCCACAACGACTTTGGAGTGCTC
TTCCATAAGCTCCCCTCTCTCACGCTGGGCAATGTGCTTATCATTGTCGGCTCCATTATC
ATGGTAGTTGCCTTCCTGGGCTGCATGGGATCCATCAAGGAGAACAAGTGCCTGCTGATG
TCGTTCTTTGTCTTGCTGCTGATTATTCTCCTTGCGGAGGTGACCTTAGCCATCCTGCTC
TTCGTGTATGAACCTAAGCTGAATGTCTATGTGGCTGAGGGCCTGACCGACAGCATCCAT
CGATATCACTCAGACAACAGCACCAAGGCAGCATGGGACTCCATCCAGACGTTTCTTCAA
TGCTGTGGTATAAATGGCACGAGTGATTGGCACGGCAGACCACCAACATCTTGTCCCACA
GACTCACAAGTTAAGGGTTGCTTTGTAAAAGCAAAGCTGTGGTTTCACTCCAATTTCCTG
TATATCGGAATCATCACTATCTGCGTGTGTGTGATCCAGGTGTTGGGGATGTCCTTTGCA
CTGACCCTGAACTGCCAGATTGACAAAACCAGCCAGGTCTTAGGACTGTGACCTGCTGCT
ACCACATGCTGGAGAGACTTGTCTCATCTCTGGAAGTCTAAAGTCACCTGTAGCGTGAAG
CCCTAAATGATCACCTCGTGAACTGGTGTCTTTGTCCCCCTCCTGTTTCTTTCCTGTTTG
GGTCCCTGTCTTATCCAACCAGAGAAGAAGATGCTGGCCAGGGACTTGCCACCTCAGACA
GCAAGACAATCCTTTACCCAATCATGACAGAAGCCATATCATTTACCAATACCTGAGCAT
TTGTCAGATATGAAAACCCAAGAGAACCTGTGGTAATAATGGCTCAAGAGCAAAGCATCA
GTCTGAAGCTTGAGTATTTGCATCTTCCTGTTGTCAAACAAGTCTCTAGCCTCTAAATCA
TGCCCAGTCCACTCCAGAAGTCAAGCCAGAGACGAGCTTAGGGGAGGAGCTCTGGGGCTA
GATTCACTGGATCATTGTCTCAGTCTTCTGGTTCCTTTTGAATAGGGGTCTTGTTTACAG
GAATGACAGAGTACTCTTTCTCCAAAGGTGAGGTTTCATTTCAATTTCTTTATTAAGGGG
TCTTATTAATTCATTCTAAGTCTTTCCAAAAGAAACTATCCCTTGACTCACATCCTGATT
TCAGCCCATCTCTTAGATTTGATTTCCATAACTAGGAAGGAATTCAGCAGAATGAGTGTC
TCTGGTGGTTTAGGTGATAATCACATTCAGAAGAGTTCTGATGTTATTTTTCTATCAGAT
AAGGTTTTGTTAATGCACTGTTTTTAAGTCTTCAATAAATAAAGTAGCTATGATCTCTCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGCCCCGACATCCGCATTACCAGCTTTGTCTCAGGGCCGCATTGATAATCATTAATTC
TGCCTAAAGGACCGAGGAAAAGTGCCTGCAAAAGGGCAAGAATATCTCAGCATGGGCATA
AGTAGCTTGAAATTGCTGAAGTATGTCCTGTTTTTCTTCAACTTGCTCTTTTGGTTCTGT
GGCTGTTGCATTTTGGGCTTTGGGATCTACCTCCTGATCCACAACGACTTTGGAGTGCTC
TTCCATAAGCTCCCCTCTCTCACGCTGGGCAATGTGCTTATCATTGTCGGCTCCATTATC
ATGGTAGTTGCCTTCCTGGGCTGCATGGGATCCATCAAGGAGAACAAGTGCCTGCTGATG
TCGTTCTTTGTCTTGCTGCTGATTATTCTCCTTGCGGAGGTGACCTTAGCCATCCTGCTC
TTCGTGTATGAACCTAAGCTGAATGTCTATGTGGCTGAGGGCCTGACCGACAGCATCCAT
CGATATCACTCAGACAACAGCACCAAGGCAGCATGGGACTCCATCCAGACGTTTCTTCAA
TGCTGTGGTATAAATGGCACGAGTGATTGGCACGGCAGACCACCAACATCTTGTCCCACA
GACTCACAAGTTAAGGGTTGCTTTGTAAAAGCAAAGCTGTGGTTTCACTCCAATTTCCTG
TATATCGGAATCATCACTATCTGCGTGTGTGTGATCCAGGTGTTGGGGATGTCCTTTGCA
CTGACCCTGAACTGCCAGATTGACAAAACCAGCCAGGTCTTAGGACTGTGACCTGCTGCT
ACCACATGCTGGAGAGACTTGTCTCATCTCTGGAAGTCTAAAGTCACCTGTAGCGTGAAG
CCCTAAATGATCACCTCGTGAACTGGTGTCTTTGTCCCCCTCCTGTTTCTTTCCTGTTTG
GGTCCCTGTCTTATCCAACCAGAGAAGAAGATGCTGGCCAGGGACTTGCCACCTCAGACA
GCAAGACAATCCTTTACCCAATCATGACAGAAGCCATATCATTTACCAATACCTGAGCAT
TTGTCAGATATGAAAACCCAAGAGAACCTGTGGTAATAATGGCTCAAGAGCAAAGCATCA
GTCTGAAGCTTGAGTATTTGCATCTTCCTGTTGTCAAACAAGTCTCTAGCCTCTAAATCA
TGCCCAGTCCACTCCAGAAGTCAAGCCAGAGACGAGCTTAGGGGAGGAGCTCTGGGGCTA
GATTCACTGGATCATTGTCTCAGTCTTCTGGTTCCTTTTGAATAGGGGTCTTGTTTACAG
GAATGACAGAGTACTCTTTCTCCAAAGGTGAGGTTTCATTTCAATTTCTTTATTAAGGGG
TCTTATTAATTCATTCTAAGTCTTTCCAAAAGAAACTATCCCTTGACTCACATCCTGATT
TCAGCCCATCTCTTAGATTTGATTTCCATAACTAGGAAGGAATTCAGCAGAATGAGTGTC
TCTGGTGGTTTAGGTGATAATCACATTCAGAAGAGTTCTGATGTTATTTTTCTATCAGAT
AAGGTTTTGTTAATGCACTGTTTTTAAGTCTTCAATAAATAAAGTAGCTATGATCTCTCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               CD53_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               CD53_HUMAN

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               167-383, gnl|bosTau2|chr3 (30361550-30361769)
               

               
               167-383, gnl|Hg17|chr1 (111147000-111147216)
               

               
               167-383, gnl|Mm7|chr3 (106587283-106587062)
               


               
               697-1561, gnl|bosTau2|chr3 (30382015-30382868)
               

               
               697-1561, gnl|Hg17|chr1 (111153785-111154586)
               

               
               697-1561, gnl|Mm7|chr3 (106579166-106578224)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-383, gnl|bosTau2|chr3 (30361550-30361769)
               

               
               167-383, gnl|Hg17|chr1 (111147000-111147216)
               

               
               167-383, gnl|Mm7|chr3 (106587283-106587062)
               


               
               697-1561, gnl|bosTau2|chr3 (30382015-30382868)
               

               
               697-1561, gnl|Hg17|chr1 (111153785-111154586)
               

               
               697-1561, gnl|Mm7|chr3 (106579166-106578224)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               cbl (1.60716)
               

               
               spl (0.715922)
               

               
               cty (0.62448)
               

               
               lnt (0.569233)
               

               
               clu (0.478583)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               fty (0.351679)
               

               
               liv (0.292569)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.60716)
               

               
               spl (0.715922)
               

               
               cty (0.62448)
               

               
               lnt (0.569233)
               

               
               clu (0.478583)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               fty (0.351679)
               

               
               liv (0.292569)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               jej (0.0989218)

	167-383, gnl\|bosTau2\|chr3 (30361550-30361769)
	167-383, gnl\|Hg17\|chr1 (111147000-111147216)
	167-383, gnl\|Mm7\|chr3 (106587283-106587062)

	697-1561, gnl\|bosTau2\|chr3 (30382015-30382868)
	697-1561, gnl\|Hg17\|chr1 (111153785-111154586)
	697-1561, gnl\|Mm7\|chr3 (106579166-106578224)

	cbl (1.60716)
	spl (0.715922)
	cty (0.62448)
	lnt (0.569233)
	clu (0.478583)
	pla (0.401016)
	aor (0.390549)
	fty (0.351679)
	liv (0.292569)
	jca (0.22792)
	spc (0.226732)
	ill (0.175593)
	fbs (0.175346)
	ctl (0.153069)
	fat (0.147427)
	pty (0.142714)
	csk (0.140746)
	jej (0.0989218)