Non-Coding RNA Search

Ss1.1-Lng1-LNG010009C09.5

Sequence:


               
               CGAGCAGTCGGACCGGCTGCTGAGACGAACGCTTCACTGGGGCAGTCTCCGCATATCATG
GGGAGATAGACGCTGCTGCCTGTAGCTTTTGAAAATGGCTGCCTCTCATTTCACCGGGCT
CACAGCTGTTGCTGATGTAATTAAAGATCTAGACACGCTGCTGCCTTTGATTGGCCTTGG
TCCTCATAGCTCCAAAAAGAAACAAGATCTCGATAAGCTCTATGAGCTGAAGTCCAAAGC
ACGGCAGATTATGAACCAGTTTGGCCCCTCAGCCCTAATCAACCTCTCCAATTTCTCATC
GATAAAACCGGAACCAGCTAGCACCCCTCCACAAGGCTCCATGGCCAATAGCACTACAGT
GGTAAAGATCCCAGGCACTCCTGGGACAGGAGGGCGTCTCAGCCCTGAAAACAATCAGGT
ATTGACCAAGAAGAAATTACAAGACTTAGTAAGAGAAGTGGATCCTAATGAGCAATTGGA
TGAAGATGTGGAGGAGATGCTGCTGCAGATCGCTGATGATTTTATCGAGAGCGTGGTGAC
AGCAGCCTGCCAGCTTGCTCGGCATCGCAAGTCCAGCACACTGGAAGTAAAGGATGTCCA
GCTGCATCTAGAACGCCAGTGGAACATGTGGATCCCAGGGTTCGGCTCTGAAGAAATCCG
ACCCTACAAAAAAGCTTGCACCACAGAAGCTCATAAACAGAGAATGGCATTGATCCGGAA
AACAACCAAGAAATAACACATGGAAAGGTCAGGGAATGGACAACAATGTATTTGGAGATA
CTTGAGCTGAGACCTCAGCCATCTCATCCTTGGATTTTTTTTTTTTTAATGCTTTACAGA
GAAGCATATATTTTTTATTAACAGTGCAGCAATATCTATAATGACTGAGAAGATCTGCCA
AAAGAATAAAGCCTCCTACCCCAACTTCCAGTCCCATTTTCCTCCCGTCTCAAAGAAGAG
CAGTGTATCTTCCAGAGAAGATTTTATTTGGTTTATTATATAAGTGATTGACTAGGGGAC
AAAGCATTATGGTCTTGTTTGGTGAGGCAGTATTAACAAGATTTTAGAGATTTTTTTTTC
CTTCTCCCTTCCCCTTTTCCCTGTACTTTGTAATGTCAGTGTTTATATGAATATGATTTT
CATTTCCTTTTCCAGAATAAAGAAGTTATTAGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCAGTCGGACCGGCTGCTGAGACGAACGCTTCACTGGGGCAGTCTCCGCATATCATG
GGGAGATAGACGCTGCTGCCTGTAGCTTTTGAAAATGGCTGCCTCTCATTTCACCGGGCT
CACAGCTGTTGCTGATGTAATTAAAGATCTAGACACGCTGCTGCCTTTGATTGGCCTTGG
TCCTCATAGCTCCAAAAAGAAACAAGATCTCGATAAGCTCTATGAGCTGAAGTCCAAAGC
ACGGCAGATTATGAACCAGTTTGGCCCCTCAGCCCTAATCAACCTCTCCAATTTCTCATC
GATAAAACCGGAACCAGCTAGCACCCCTCCACAAGGCTCCATGGCCAATAGCACTACAGT
GGTAAAGATCCCAGGCACTCCTGGGACAGGAGGGCGTCTCAGCCCTGAAAACAATCAGGT
ATTGACCAAGAAGAAATTACAAGACTTAGTAAGAGAAGTGGATCCTAATGAGCAATTGGA
TGAAGATGTGGAGGAGATGCTGCTGCAGATCGCTGATGATTTTATCGAGAGCGTGGTGAC
AGCAGCCTGCCAGCTTGCTCGGCATCGCAAGTCCAGCACACTGGAAGTAAAGGATGTCCA
GCTGCATCTAGAACGCCAGTGGAACATGTGGATCCCAGGGTTCGGCTCTGAAGAAATCCG
ACCCTACAAAAAAGCTTGCACCACAGAAGCTCATAAACAGAGAATGGCATTGATCCGGAA
AACAACCAAGAAATAACACATGGAAAGGTCAGGGAATGGACAACAATGTATTTGGAGATA
CTTGAGCTGAGACCTCAGCCATCTCATCCTTGGATTTTTTTTTTTTTAATGCTTTACAGA
GAAGCATATATTTTTTATTAACAGTGCAGCAATATCTATAATGACTGAGAAGATCTGCCA
AAAGAATAAAGCCTCCTACCCCAACTTCCAGTCCCATTTTCCTCCCGTCTCAAAGAAGAG
CAGTGTATCTTCCAGAGAAGATTTTATTTGGTTTATTATATAAGTGATTGACTAGGGGAC
AAAGCATTATGGTCTTGTTTGGTGAGGCAGTATTAACAAGATTTTAGAGATTTTTTTTTC
CTTCTCCCTTCCCCTTTTCCCTGTACTTTGTAATGTCAGTGTTTATATGAATATGATTTT
CATTTCCTTTTCCAGAATAAAGAAGTTATTAGTCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57043213|ref|XP_535337.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57043213|ref|XP_535337.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1174, gnl|bosTau2|chr14 (10870013-10871173)
               

               
               1-1174, gnl|Hg17|chr1 (28769294-28750228)
               

               
               1-1174, gnl|Mm7|chr4 (131497212-131507509)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1174, gnl|bosTau2|chr14 (10870013-10871173)
               

               
               1-1174, gnl|Hg17|chr1 (28769294-28750228)
               

               
               1-1174, gnl|Mm7|chr4 (131497212-131507509)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               ste (0.405625)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	1-1174, gnl\|bosTau2\|chr14 (10870013-10871173)
	1-1174, gnl\|Hg17\|chr1 (28769294-28750228)
	1-1174, gnl\|Mm7\|chr4 (131497212-131507509)

	ste (0.405625)
	vin (0.332557)
	bfe (0.299715)
	hlv (0.278513)
	ssp (0.271039)
	pan (0.23596)
	mas (0.210305)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	cje (0.165235)
	cki (0.165235)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	nca (0.136874)
	kid (0.129735)
	ova (0.129132)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	spc (0.113366)
	nbm (0.0993246)